Wall clock time and date at job start Mon Mar 30 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47255 * 335.06788 * 3 2 1 5 5 C 1.46498 * 120.00184 * 270.00270 * 4 3 2 6 6 C 1.50705 * 109.46994 * 269.99731 * 5 4 3 7 7 H 1.07998 * 120.00121 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99774 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00535 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00014 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47018 * 89.99914 * 10 8 6 12 12 H 1.48498 * 109.47767 * 210.00027 * 10 8 6 13 13 H 1.48498 * 109.47056 * 330.00539 * 10 8 6 14 14 C 1.39678 * 120.00138 * 89.99842 * 4 3 2 15 15 C 1.38915 * 120.06984 * 0.02562 * 14 4 3 16 16 C 1.38104 * 119.92359 * 179.97438 * 15 14 4 17 17 C 1.38288 * 120.07208 * 359.97438 * 16 15 14 18 18 C 1.38290 * 120.15288 * 0.02562 * 17 16 15 19 19 C 1.38100 * 120.07105 * 359.97438 * 18 17 16 20 20 H 4.40641 * 5.51441 * 180.02562 * 4 1 2 21 21 H 1.08994 * 109.47130 * 215.07160 * 3 2 1 22 22 H 1.09004 * 109.47330 * 95.06748 * 3 2 1 23 23 H 1.08995 * 109.47144 * 29.99687 * 5 4 3 24 24 H 1.09000 * 109.47505 * 149.99538 * 5 4 3 25 25 H 0.96999 * 120.00805 * 179.97438 * 9 8 6 26 26 H 1.07998 * 120.03739 * 359.69591 * 15 14 4 27 27 H 1.08001 * 119.96576 * 179.97438 * 16 15 14 28 28 H 1.08007 * 119.92458 * 180.02562 * 17 16 15 29 29 H 1.07997 * 119.96313 * 180.02562 * 18 17 16 30 30 H 1.08007 * 120.03349 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2516 0.5822 5 6 3.3790 -1.3430 2.0238 6 6 4.8022 -0.9442 2.3185 7 1 5.4589 -0.6516 1.5126 8 6 5.2654 -0.9520 3.6171 9 7 4.4656 -1.3079 4.5985 10 14 7.0296 -0.4585 3.9823 11 1 7.0930 1.0042 4.2312 12 1 7.5086 -1.1864 5.1848 13 1 7.8898 -0.8006 2.8212 14 6 3.3681 -2.3585 -0.2371 15 6 3.1375 -2.2734 -1.6043 16 6 3.3697 -3.3696 -2.4117 17 6 3.8317 -4.5507 -1.8605 18 6 4.0623 -4.6389 -0.4998 19 6 3.8322 -3.5465 0.3132 20 1 -1.0499 -0.0004 0.0000 21 1 3.0089 0.8418 0.5905 22 1 3.0093 0.0916 -1.0237 23 1 2.6980 -0.6748 2.5508 24 1 3.2125 -2.3676 2.3564 25 1 4.7916 -1.3137 5.5121 26 1 2.7728 -1.3525 -2.0348 27 1 3.1903 -3.3043 -3.4747 28 1 4.0129 -5.4064 -2.4942 29 1 4.4236 -5.5626 -0.0727 30 1 4.0121 -3.6161 1.3759 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019503498.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:13 Heat of formation + Delta-G solvation = 71.329729 kcal Electronic energy + Delta-G solvation = -13544.544233 eV Core-core repulsion = 11305.770081 eV Total energy + Delta-G solvation = -2238.774152 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.36155 -37.45135 -35.01673 -33.76330 -31.77652 -30.68363 -29.51120 -26.90523 -24.68681 -22.94984 -21.64344 -19.24452 -18.62472 -18.25711 -16.91311 -16.39601 -15.98525 -15.57753 -15.31556 -14.57292 -14.38200 -14.31432 -13.70181 -13.50923 -13.19148 -12.90528 -12.57182 -12.34183 -12.06824 -11.84324 -11.70949 -11.30247 -11.02102 -10.65114 -10.61623 -9.68874 -8.39139 -7.92737 -6.37695 0.67845 0.88668 1.37978 1.39115 1.50111 1.67455 1.91402 2.36704 2.80211 3.06597 3.14535 3.59309 4.10411 4.23141 4.34297 4.47493 4.63587 4.76106 4.80206 4.91261 5.07047 5.08969 5.18905 5.31409 5.57273 5.68778 5.74614 5.86725 6.06001 6.20136 6.46121 6.69076 6.80248 6.87682 7.34129 8.83793 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.023300 B = 0.010100 C = 0.007851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.437792 B = 2771.502468 C = 3565.621742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.235 4.235 3 C 0.227 3.773 4 N -0.620 5.620 5 C 0.271 3.729 6 C -0.541 4.541 7 H 0.055 0.945 8 C 0.012 3.988 9 N -0.928 5.928 10 Si 0.964 3.036 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.270 1.270 14 C 0.208 3.792 15 C -0.217 4.217 16 C -0.074 4.074 17 C -0.192 4.192 18 C -0.082 4.082 19 C -0.217 4.217 20 H 0.250 0.750 21 H 0.090 0.910 22 H 0.111 0.889 23 H 0.004 0.996 24 H 0.009 0.991 25 H 0.267 0.733 26 H 0.128 0.872 27 H 0.149 0.851 28 H 0.143 0.857 29 H 0.131 0.869 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.258 -1.399 -11.816 12.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.237 4.237 3 C 0.104 3.896 4 N -0.327 5.327 5 C 0.150 3.850 6 C -0.579 4.579 7 H 0.073 0.927 8 C -0.188 4.188 9 N -0.568 5.568 10 Si 0.789 3.211 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.194 1.194 14 C 0.105 3.895 15 C -0.240 4.240 16 C -0.092 4.092 17 C -0.212 4.212 18 C -0.100 4.100 19 C -0.239 4.239 20 H 0.267 0.733 21 H 0.108 0.892 22 H 0.128 0.872 23 H 0.022 0.978 24 H 0.027 0.973 25 H 0.076 0.924 26 H 0.146 0.854 27 H 0.166 0.834 28 H 0.161 0.839 29 H 0.149 0.851 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.269 -1.257 -11.482 12.004 hybrid contribution 0.600 0.316 1.010 1.217 sum -2.669 -0.942 -10.471 10.847 Atomic orbital electron populations 1.25719 0.96696 0.98538 0.99956 1.24375 0.96004 1.01927 1.01371 1.18273 0.83473 0.87315 1.00498 1.46916 1.68921 1.09733 1.07119 1.18744 0.94784 0.95625 0.75872 1.21779 0.97743 1.45578 0.92841 0.92691 1.25810 1.02106 0.95000 0.95847 1.70048 1.37684 1.48679 1.00344 0.85462 0.79402 0.78531 0.77731 1.19601 1.20556 1.19423 1.18233 0.93021 0.87228 0.90995 1.20839 1.10801 1.01197 0.91116 1.21170 0.96047 0.91900 1.00090 1.21133 1.06204 0.99299 0.94582 1.21108 0.97324 0.97239 0.94341 1.20861 1.09026 0.94095 0.99936 0.73345 0.89192 0.87162 0.97801 0.97286 0.92410 0.85445 0.83355 0.83885 0.85090 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.65 19.25 74.32 1.43 -4.22 16 2 C -0.24 -8.26 13.68 31.13 0.43 -7.84 16 3 C 0.23 8.42 5.63 84.57 0.48 8.90 16 4 N -0.62 -27.70 2.55 -712.18 -1.81 -29.52 16 5 C 0.27 14.50 4.91 85.63 0.42 14.92 16 6 C -0.54 -30.40 9.39 25.60 0.24 -30.16 16 7 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 8 C 0.01 0.65 5.46 84.65 0.46 1.11 16 9 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 10 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 14 C 0.21 8.73 6.55 38.21 0.25 8.98 16 15 C -0.22 -7.40 9.20 22.40 0.21 -7.19 16 16 C -0.07 -2.10 10.04 22.25 0.22 -1.88 16 17 C -0.19 -5.53 10.04 22.29 0.22 -5.30 16 18 C -0.08 -2.79 10.04 22.25 0.22 -2.57 16 19 C -0.22 -9.24 9.21 22.40 0.21 -9.03 16 20 H 0.25 4.92 7.80 -4.42 -0.03 4.88 16 21 H 0.09 3.41 8.07 -2.39 -0.02 3.39 16 22 H 0.11 3.45 6.20 -2.39 -0.01 3.43 16 23 H 0.00 0.23 8.07 -2.39 -0.02 0.21 16 24 H 0.01 0.53 6.20 -2.39 -0.01 0.52 16 25 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 26 H 0.13 3.87 6.15 -2.91 -0.02 3.85 16 27 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 28 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 29 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 30 H 0.10 4.72 6.14 -2.91 -0.02 4.70 16 Total: -1.00 -65.03 269.02 6.40 -58.62 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 1.12 Total: 13.71 kcal Atomic # 6 Polarization: -39.07 SS G_CDS: 4.79 Total: -34.28 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -1.53 Total: -84.13 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -65.03 6.40 -58.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019503498.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.952 kcal (2) G-P(sol) polarization free energy of solvation -65.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds