Wall clock time and date at job start Mon Mar 30 2020 02:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.35646 * 125.35492 * 2 1 4 4 H 0.97000 * 124.68577 * 0.03869 * 3 2 1 5 5 C 1.38145 * 110.61842 * 180.02562 * 3 2 1 6 6 C 1.39125 * 132.80631 * 180.02562 * 5 3 2 7 7 C 1.37863 * 119.96977 * 179.97438 * 6 5 3 8 8 C 1.38674 * 120.62295 * 0.25286 * 7 6 5 9 9 C 1.50706 * 119.87060 * 179.74727 * 8 7 6 10 10 C 1.37872 * 120.25191 * 359.48252 * 8 7 6 11 11 C 1.39188 * 119.69366 * 0.51760 * 10 8 7 12 12 C 1.38891 * 125.36393 * 180.02562 * 2 1 3 13 13 C 1.40891 * 126.92621 * 0.02562 * 12 2 1 14 14 H 1.07996 * 120.00341 * 30.78027 * 13 12 2 15 15 C 1.39745 * 119.99828 * 210.78061 * 13 12 2 16 16 N 1.31059 * 119.99769 * 19.56097 * 15 13 12 17 17 Si 1.86796 * 120.00140 * 199.55353 * 15 13 12 18 18 H 1.48497 * 109.47408 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46729 * 120.00465 * 17 15 13 20 20 H 1.48501 * 109.47170 * 240.00080 * 17 15 13 21 21 H 1.08998 * 109.47063 * 95.07634 * 1 2 3 22 22 H 1.08999 * 109.46571 * 215.07703 * 1 2 3 23 23 H 1.08999 * 109.47353 * 335.07123 * 1 2 3 24 24 H 1.08003 * 120.01321 * 359.97190 * 6 5 3 25 25 H 1.07993 * 119.69051 * 179.97438 * 7 6 5 26 26 H 1.08998 * 109.47034 * 89.99868 * 9 8 7 27 27 H 1.08996 * 109.46759 * 209.99805 * 9 8 7 28 28 H 1.08995 * 109.46944 * 329.99721 * 9 8 7 29 29 H 1.08003 * 120.15197 * 180.25151 * 10 8 7 30 30 H 0.96999 * 119.99743 * 174.50987 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2919 1.1063 0.0000 4 1 1.9608 2.0180 0.0005 5 6 3.6279 0.7549 -0.0006 6 6 4.8019 1.5015 -0.0004 7 6 6.0239 0.8634 -0.0006 8 6 6.0977 -0.5214 -0.0063 9 6 7.4426 -1.2013 -0.0122 10 6 4.9454 -1.2784 -0.0011 11 6 3.7053 -0.6464 -0.0009 12 6 2.3109 -1.1326 -0.0005 13 6 1.8823 -2.4748 -0.0016 14 1 0.9528 -2.7445 -0.4807 15 6 2.6600 -3.4571 0.6173 16 7 3.5586 -3.1163 1.5084 17 14 2.4187 -5.2557 0.1747 18 1 1.3511 -5.3744 -0.8505 19 1 3.6873 -5.8068 -0.3661 20 1 2.0266 -6.0159 1.3887 21 1 -0.3633 -0.0909 -1.0236 22 1 -0.3632 -0.8410 0.5906 23 1 -0.3634 0.9319 0.4331 24 1 4.7558 2.5806 -0.0001 25 1 6.9323 1.4474 -0.0008 26 1 7.7693 -1.3693 1.0140 27 1 7.3640 -2.1574 -0.5296 28 1 8.1672 -0.5690 -0.5252 29 1 5.0048 -2.3568 -0.0014 30 1 4.0425 -3.8014 1.9957 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019725615.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:09 Heat of formation + Delta-G solvation = 35.586225 kcal Electronic energy + Delta-G solvation = -13954.844632 eV Core-core repulsion = 11714.520526 eV Total energy + Delta-G solvation = -2240.324107 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.64757 -36.14910 -33.58881 -31.12856 -29.99404 -29.31904 -27.12938 -24.82323 -24.24356 -20.73561 -19.72299 -18.98486 -16.68357 -15.83140 -14.81535 -14.42794 -13.94840 -13.42937 -13.06128 -12.79648 -12.69488 -12.37822 -11.73440 -11.66292 -11.44787 -11.29853 -11.17850 -10.90607 -10.69397 -10.19520 -10.04485 -9.88137 -9.33317 -8.90971 -8.14905 -6.75528 -6.58618 -6.25531 -3.94489 2.40188 2.78848 3.09549 3.20742 3.25839 4.03496 4.15132 4.52088 4.99379 5.48957 5.75476 5.92702 6.06945 6.10239 6.22033 6.32048 6.33308 6.51772 6.55510 6.63522 6.82373 6.96963 7.03877 7.21404 7.37468 7.41042 7.59704 7.84915 8.02083 8.27490 8.42160 8.73803 8.89266 9.18039 9.20254 10.51344 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.022603 B = 0.014525 C = 0.009185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.494295 B = 1927.300920 C = 3047.619513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.130 4.130 3 N -0.591 5.591 4 H 0.390 0.610 5 C 0.093 3.907 6 C -0.167 4.167 7 C -0.104 4.104 8 C -0.177 4.177 9 C -0.091 4.091 10 C -0.007 4.007 11 C -0.098 4.098 12 C 0.074 3.926 13 C -0.458 4.458 14 H 0.075 0.925 15 C 0.079 3.921 16 N -0.808 5.808 17 Si 0.896 3.104 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.279 1.279 21 H 0.040 0.960 22 H 0.066 0.934 23 H 0.035 0.965 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.119 0.881 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 3.337 -1.862 4.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.233 4.233 3 N -0.194 5.194 4 H 0.223 0.777 5 C -0.017 4.017 6 C -0.189 4.189 7 C -0.123 4.123 8 C -0.180 4.180 9 C -0.148 4.148 10 C -0.026 4.026 11 C -0.105 4.105 12 C 0.068 3.932 13 C -0.490 4.490 14 H 0.093 0.907 15 C -0.136 4.136 16 N -0.436 5.436 17 Si 0.722 3.278 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.204 1.204 21 H 0.059 0.941 22 H 0.084 0.916 23 H 0.054 0.946 24 H 0.115 0.885 25 H 0.121 0.879 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.137 0.863 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.857 3.288 -1.754 4.163 hybrid contribution -0.189 -0.332 0.010 0.382 sum 1.668 2.956 -1.744 3.816 Atomic orbital electron populations 1.19762 0.90101 1.00328 0.99930 1.20221 0.91702 0.85504 1.25829 1.40875 1.03535 1.06817 1.68204 0.77707 1.18235 0.84189 0.94848 1.04397 1.19657 0.90495 0.97159 1.11597 1.20264 0.95447 0.93725 1.02882 1.19407 0.94673 0.93365 1.10508 1.20490 0.94279 0.99376 1.00650 1.20523 0.89799 0.99267 0.92987 1.19273 0.94406 0.90745 1.06028 1.17810 0.87683 0.91605 0.96148 1.18556 1.06397 0.90328 1.33741 0.90712 1.25691 0.93663 1.00445 0.93767 1.69957 1.20856 1.35049 1.17732 0.86462 0.79048 0.83079 0.79211 1.18758 1.20061 1.20448 0.94120 0.91554 0.94589 0.88467 0.87945 0.92923 0.92873 0.93254 0.86320 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.86 10.17 36.01 0.37 -0.49 16 2 C -0.13 -3.12 7.23 -80.66 -0.58 -3.70 16 3 N -0.59 -13.04 5.99 -6.14 -0.04 -13.08 16 4 H 0.39 7.07 8.96 -40.82 -0.37 6.70 16 5 C 0.09 2.22 7.23 -83.90 -0.61 1.61 16 6 C -0.17 -3.50 10.07 -39.39 -0.40 -3.90 16 7 C -0.10 -2.10 9.67 -39.56 -0.38 -2.48 16 8 C -0.18 -3.82 5.88 -104.59 -0.62 -4.43 16 9 C -0.09 -1.58 10.00 36.01 0.36 -1.22 16 10 C -0.01 -0.18 8.40 -39.36 -0.33 -0.51 16 11 C -0.10 -2.59 5.78 -104.90 -0.61 -3.20 16 12 C 0.07 1.99 5.72 -104.80 -0.60 1.39 16 13 C -0.46 -12.38 8.93 -38.02 -0.34 -12.72 16 14 H 0.07 1.96 7.92 -52.49 -0.42 1.54 16 15 C 0.08 2.05 4.88 -17.32 -0.08 1.96 16 16 N -0.81 -21.56 10.30 55.54 0.57 -20.99 16 17 Si 0.90 19.38 29.61 -169.99 -5.03 14.34 16 18 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 25 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 28 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 29 H 0.12 3.05 6.30 -52.48 -0.33 2.72 16 30 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 257.41 15.07 3.88 3.88 Total: -1.00 -29.08 257.41 -8.05 -37.13 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -3.62 Total: 6.40 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -3.82 Total: -27.69 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.54 Total: -34.07 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.08 -8.05 -37.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019725615.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.719 kcal (2) G-P(sol) polarization free energy of solvation -29.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds