Wall clock time and date at job start Mon Mar 30 2020 02:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39593 * 120.10432 * 272.63492 * 3 2 1 5 5 C 1.37996 * 120.00569 * 179.74596 * 4 3 2 6 6 C 1.38230 * 120.22452 * 0.55482 * 5 4 3 7 7 C 1.38991 * 120.20788 * 359.70465 * 6 5 4 8 8 N 1.39695 * 120.00297 * 180.02562 * 7 6 5 9 9 C 1.46499 * 120.00193 * 359.97438 * 8 7 6 10 10 C 1.52997 * 109.47040 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47084 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00113 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00075 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99932 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99987 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46924 * 59.99914 * 15 13 11 17 17 H 1.48500 * 109.47027 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47093 * 300.00107 * 15 13 11 19 19 C 1.38688 * 119.99130 * 0.02562 * 7 6 5 20 20 H 4.52044 * 14.03180 * 359.97438 * 4 2 1 21 21 H 1.08003 * 119.99755 * 0.02562 * 4 3 2 22 22 H 1.08003 * 119.89392 * 180.25958 * 5 4 3 23 23 H 1.07998 * 119.90119 * 179.72035 * 6 5 4 24 24 H 0.97001 * 119.99413 * 179.97438 * 8 7 6 25 25 H 1.08997 * 109.46413 * 299.99649 * 9 8 7 26 26 H 1.09003 * 109.47152 * 59.99561 * 9 8 7 27 27 H 1.09001 * 109.46854 * 299.99525 * 10 9 8 28 28 H 1.08994 * 109.47776 * 59.99430 * 10 9 8 29 29 H 0.96989 * 120.00052 * 180.02562 * 14 13 11 30 30 H 1.07989 * 120.10960 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3062 -0.0546 1.2064 5 6 4.6861 -0.0591 1.2038 6 6 5.3799 0.0024 0.0098 7 6 4.6920 0.0631 -1.1965 8 7 5.3974 0.1246 -2.4006 9 6 6.8624 0.1257 -2.3921 10 6 7.3807 0.1994 -3.8298 11 6 8.8876 0.2012 -3.8210 12 1 9.4223 0.1548 -2.8838 13 6 9.5839 0.2620 -5.0096 14 7 8.9329 0.3179 -6.1509 15 14 11.4518 0.2649 -4.9987 16 1 11.9450 -0.9803 -4.3572 17 1 11.9549 0.3351 -6.3941 18 1 11.9405 1.4416 -4.2360 19 6 3.3051 0.0625 -1.2044 20 1 -1.0500 0.0005 0.0001 21 1 2.7678 -0.0983 2.1416 22 1 5.2260 -0.1061 2.1380 23 1 6.4599 0.0030 0.0140 24 1 4.9172 0.1665 -3.2424 25 1 7.2217 0.9889 -1.8321 26 1 7.2237 -0.7888 -1.9216 27 1 7.0212 -0.6637 -4.3902 28 1 7.0193 1.1139 -4.2999 29 1 9.4226 0.3603 -6.9870 30 1 2.7687 0.1092 -2.1404 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020034463.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:18 Heat of formation + Delta-G solvation = 64.986932 kcal Electronic energy + Delta-G solvation = -12756.363057 eV Core-core repulsion = 10517.313861 eV Total energy + Delta-G solvation = -2239.049196 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.22683 -35.86829 -33.59252 -32.91574 -30.74479 -29.88223 -27.81905 -24.68698 -23.17161 -21.76229 -20.79471 -18.59202 -16.74599 -16.20686 -15.87216 -15.13263 -14.53439 -14.20697 -14.11331 -13.48275 -13.32193 -12.95586 -12.27763 -11.56075 -11.47322 -11.37111 -10.99018 -10.90860 -10.68016 -10.45876 -10.43046 -9.62418 -9.50278 -9.34458 -8.47975 -8.42761 -7.02757 -6.12000 -4.15746 1.15911 1.80801 2.74744 3.17931 3.28081 3.32638 3.34680 3.93507 4.24943 4.33590 4.41383 5.11961 5.24808 5.37509 5.43667 5.70716 5.72088 5.93255 6.18683 6.24780 6.27338 6.50775 6.65014 6.67693 6.74902 7.04004 7.43229 7.52587 7.59254 7.73833 7.90794 8.12805 8.30839 8.89939 9.49190 10.99609 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.066103 B = 0.004791 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.476947 B = 5842.485783 C = 6245.515935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C 0.045 3.955 4 C -0.169 4.169 5 C -0.071 4.071 6 C -0.191 4.191 7 C 0.228 3.772 8 N -0.739 5.739 9 C 0.124 3.876 10 C 0.013 3.987 11 C -0.524 4.524 12 H 0.058 0.942 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.182 4.182 20 H 0.222 0.778 21 H 0.116 0.884 22 H 0.122 0.878 23 H 0.126 0.874 24 H 0.398 0.602 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.263 0.737 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.030 -0.577 11.280 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.132 4.132 3 C 0.044 3.956 4 C -0.190 4.190 5 C -0.090 4.090 6 C -0.214 4.214 7 C 0.121 3.879 8 N -0.364 5.364 9 C 0.002 3.998 10 C -0.024 4.024 11 C -0.563 4.563 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.205 4.205 20 H 0.238 0.762 21 H 0.134 0.866 22 H 0.140 0.860 23 H 0.144 0.856 24 H 0.232 0.768 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.735 -0.566 11.063 15.426 hybrid contribution 0.655 0.025 -0.488 0.817 sum -10.080 -0.541 10.575 14.620 Atomic orbital electron populations 1.24790 0.95704 1.00521 1.00466 1.20243 0.92202 1.00532 1.00271 1.15626 0.85878 1.00603 0.93479 1.20773 0.94028 1.07894 0.96275 1.20757 0.93530 0.97271 0.97410 1.20841 1.00243 1.09240 0.91041 1.17828 0.90504 0.92148 0.87419 1.45267 1.07132 1.79294 1.04700 1.21716 0.76731 0.99567 1.01833 1.19277 0.96301 0.97870 0.88990 1.20998 0.90900 1.51612 0.92787 0.92361 1.25007 0.98833 0.94941 0.95491 1.69945 1.35805 1.49927 0.97498 0.86569 0.85143 0.78736 0.77065 1.20103 1.21209 1.20098 1.20547 0.92099 1.10538 0.97310 0.76156 0.86572 0.85995 0.85601 0.76757 0.93195 0.93189 0.95972 0.95974 0.92733 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.17 19.25 29.55 0.57 -1.60 16 2 C -0.13 -1.81 13.24 -38.84 -0.51 -2.32 16 3 C 0.04 0.66 5.72 -107.03 -0.61 0.05 16 4 C -0.17 -2.28 9.75 -39.16 -0.38 -2.66 16 5 C -0.07 -0.94 10.02 -39.67 -0.40 -1.34 16 6 C -0.19 -2.92 9.31 -39.31 -0.37 -3.29 16 7 C 0.23 3.74 6.65 -83.83 -0.56 3.19 16 8 N -0.74 -13.02 5.73 -58.67 -0.34 -13.36 16 9 C 0.12 2.50 4.85 -4.04 -0.02 2.48 16 10 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 11 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 15 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 C -0.18 -2.79 9.60 -38.98 -0.37 -3.17 16 20 H 0.22 1.45 7.80 -54.09 -0.42 1.03 16 21 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 22 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 23 H 0.13 1.90 6.71 -52.49 -0.35 1.55 16 24 H 0.40 6.69 8.48 -40.82 -0.35 6.34 16 25 H 0.05 0.99 7.94 -51.93 -0.41 0.58 16 26 H 0.05 1.00 7.94 -51.93 -0.41 0.58 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 273.30 15.07 4.12 4.12 Total: -1.00 -29.49 273.30 -7.31 -36.80 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -3.60 Total: 3.32 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -3.21 Total: -21.55 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.40 Total: -38.77 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.49 -7.31 -36.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020034463.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.786 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds