Wall clock time and date at job start Mon Mar 30 2020 02:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39593 * 120.10432 * 272.63492 * 3 2 1 5 5 C 1.37996 * 120.00569 * 179.74596 * 4 3 2 6 6 C 1.38230 * 120.22452 * 0.55482 * 5 4 3 7 7 C 1.38991 * 120.20788 * 359.70465 * 6 5 4 8 8 N 1.39695 * 120.00297 * 180.02562 * 7 6 5 9 9 C 1.46499 * 120.00193 * 359.97438 * 8 7 6 10 10 C 1.52997 * 109.47040 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47084 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00113 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00075 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99932 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99987 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46924 * 59.99914 * 15 13 11 17 17 H 1.48500 * 109.47027 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47093 * 300.00107 * 15 13 11 19 19 C 1.38688 * 119.99130 * 0.02562 * 7 6 5 20 20 H 4.52044 * 14.03180 * 359.97438 * 4 2 1 21 21 H 1.08003 * 119.99755 * 0.02562 * 4 3 2 22 22 H 1.08003 * 119.89392 * 180.25958 * 5 4 3 23 23 H 1.07998 * 119.90119 * 179.72035 * 6 5 4 24 24 H 0.97001 * 119.99413 * 179.97438 * 8 7 6 25 25 H 1.08997 * 109.46413 * 299.99649 * 9 8 7 26 26 H 1.09003 * 109.47152 * 59.99561 * 9 8 7 27 27 H 1.09001 * 109.46854 * 299.99525 * 10 9 8 28 28 H 1.08994 * 109.47776 * 59.99430 * 10 9 8 29 29 H 0.96989 * 120.00052 * 180.02562 * 14 13 11 30 30 H 1.07989 * 120.10960 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3062 -0.0546 1.2064 5 6 4.6861 -0.0591 1.2038 6 6 5.3799 0.0024 0.0098 7 6 4.6920 0.0631 -1.1965 8 7 5.3974 0.1246 -2.4006 9 6 6.8624 0.1257 -2.3921 10 6 7.3807 0.1994 -3.8298 11 6 8.8876 0.2012 -3.8210 12 1 9.4223 0.1548 -2.8838 13 6 9.5839 0.2620 -5.0096 14 7 8.9329 0.3179 -6.1509 15 14 11.4518 0.2649 -4.9987 16 1 11.9450 -0.9803 -4.3572 17 1 11.9549 0.3351 -6.3941 18 1 11.9405 1.4416 -4.2360 19 6 3.3051 0.0625 -1.2044 20 1 -1.0500 0.0005 0.0001 21 1 2.7678 -0.0983 2.1416 22 1 5.2260 -0.1061 2.1380 23 1 6.4599 0.0030 0.0140 24 1 4.9172 0.1665 -3.2424 25 1 7.2217 0.9889 -1.8321 26 1 7.2237 -0.7888 -1.9216 27 1 7.0212 -0.6637 -4.3902 28 1 7.0193 1.1139 -4.2999 29 1 9.4226 0.3603 -6.9870 30 1 2.7687 0.1092 -2.1404 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020034463.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:17 Heat of formation + Delta-G solvation = 48.441313 kcal Electronic energy + Delta-G solvation = -12757.080529 eV Core-core repulsion = 10517.313861 eV Total energy + Delta-G solvation = -2239.766668 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.39170 -37.29100 -35.21163 -34.27874 -32.31086 -31.06122 -29.30499 -26.44608 -24.49836 -22.94599 -22.46711 -19.69667 -18.49927 -17.61296 -17.09135 -16.47368 -16.31532 -15.83240 -15.26227 -14.87763 -14.38998 -14.21942 -14.20181 -13.28915 -13.05724 -12.58132 -12.57493 -12.49063 -12.15144 -11.96163 -11.59602 -11.43196 -11.34743 -10.84362 -10.56529 -9.53219 -8.31963 -8.24494 -6.36042 0.07759 0.67850 1.41775 1.44562 1.52423 1.81360 2.16392 2.36750 2.64740 3.10397 3.15048 3.44619 4.04783 4.27909 4.38060 4.41047 4.53310 4.59831 4.73492 4.86920 4.92795 5.24655 5.33650 5.39757 5.55135 5.57669 5.64698 5.72581 5.95428 6.11598 6.44650 6.62114 6.77568 6.86953 7.33965 8.87727 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.066103 B = 0.004791 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.476947 B = 5842.485783 C = 6245.515935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.197 4.197 3 C 0.038 3.962 4 C -0.168 4.168 5 C -0.065 4.065 6 C -0.206 4.206 7 C 0.208 3.792 8 N -0.746 5.746 9 C 0.147 3.853 10 C 0.020 3.980 11 C -0.545 4.545 12 H 0.067 0.933 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.969 3.031 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.265 1.265 19 C -0.193 4.193 20 H 0.263 0.737 21 H 0.139 0.861 22 H 0.154 0.846 23 H 0.125 0.875 24 H 0.398 0.602 25 H 0.051 0.949 26 H 0.051 0.949 27 H -0.001 1.001 28 H -0.001 1.001 29 H 0.265 0.735 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.596 -0.672 13.202 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.197 4.197 3 C 0.037 3.963 4 C -0.188 4.188 5 C -0.083 4.083 6 C -0.229 4.229 7 C 0.103 3.897 8 N -0.373 5.373 9 C 0.023 3.977 10 C -0.018 4.018 11 C -0.583 4.583 12 H 0.085 0.915 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.793 3.207 16 H -0.190 1.190 17 H -0.210 1.210 18 H -0.190 1.190 19 C -0.216 4.216 20 H 0.279 0.721 21 H 0.157 0.843 22 H 0.171 0.829 23 H 0.143 0.857 24 H 0.233 0.767 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.017 0.983 28 H 0.017 0.983 29 H 0.074 0.926 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.326 -0.663 13.024 17.272 hybrid contribution 0.629 0.050 -1.012 1.193 sum -10.697 -0.612 12.012 16.096 Atomic orbital electron populations 1.25791 0.96445 0.97088 0.97463 1.20490 0.92709 1.03367 1.03129 1.15882 0.87074 0.99805 0.93517 1.21134 0.94274 1.06486 0.96864 1.21096 0.93681 0.95667 0.97860 1.21014 1.00413 1.09939 0.91507 1.17998 0.90995 0.93536 0.87124 1.45027 1.05990 1.80837 1.05479 1.21245 0.78318 0.99652 0.98441 1.19114 0.95605 0.95563 0.91487 1.21479 0.92303 1.51246 0.93300 0.91497 1.25969 1.04160 0.94418 0.95059 1.70080 1.37865 1.50996 0.98188 0.85441 0.78763 0.79304 0.77210 1.19038 1.20976 1.19027 1.20641 0.91788 1.11090 0.98070 0.72075 0.84266 0.82853 0.85725 0.76738 0.93059 0.93048 0.98285 0.98287 0.92641 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 19.25 74.32 1.43 -1.40 16 2 C -0.20 -5.03 13.24 30.02 0.40 -4.64 16 3 C 0.04 1.08 5.72 -21.43 -0.12 0.96 16 4 C -0.17 -4.20 9.75 22.54 0.22 -3.98 16 5 C -0.06 -1.60 10.02 22.21 0.22 -1.37 16 6 C -0.21 -6.20 9.31 22.45 0.21 -5.99 16 7 C 0.21 6.91 6.65 38.18 0.25 7.17 16 8 N -0.75 -27.17 5.73 -339.53 -1.95 -29.11 16 9 C 0.15 6.05 4.85 86.38 0.42 6.47 16 10 C 0.02 1.01 5.09 29.85 0.15 1.17 16 11 C -0.54 -30.15 9.11 25.60 0.23 -29.92 16 12 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 13 C 0.00 0.13 5.46 84.66 0.46 0.59 16 14 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 15 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 16 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 19 C -0.19 -5.98 9.60 22.66 0.22 -5.76 16 20 H 0.26 2.16 7.80 -4.42 -0.03 2.12 16 21 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 22 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 23 H 0.12 3.71 6.71 -2.91 -0.02 3.69 16 24 H 0.40 14.10 8.48 -92.71 -0.79 13.32 16 25 H 0.05 2.07 7.94 -2.39 -0.02 2.05 16 26 H 0.05 2.07 7.94 -2.39 -0.02 2.06 16 27 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.26 14.92 8.31 -92.72 -0.77 14.15 16 30 H 0.12 3.58 8.06 -2.92 -0.02 3.56 16 Total: -1.00 -64.08 273.30 4.80 -59.29 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.34 Total: 16.66 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 4.09 Total: -36.70 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -1.66 Total: -84.52 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -64.08 4.80 -59.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020034463.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.727 kcal (2) G-P(sol) polarization free energy of solvation -64.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds