Wall clock time and date at job start Mon Mar 30 2020 02:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38829 * 119.73831 * 2 1 4 4 C 1.37746 * 120.67245 * 180.26578 * 3 2 1 5 5 C 1.39133 * 119.77801 * 359.51605 * 4 3 2 6 6 C 1.40674 * 119.32586 * 0.47715 * 5 4 3 7 7 C 1.46486 * 106.03923 * 179.75931 * 6 5 4 8 8 C 1.34245 * 106.99583 * 0.02562 * 7 6 5 9 9 N 1.36827 * 109.92996 * 0.02562 * 8 7 6 10 10 C 1.46501 * 125.06464 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46999 * 264.97526 * 10 9 8 12 12 H 1.08009 * 120.00202 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00337 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99524 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00053 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47370 * 90.00080 * 15 13 11 17 17 H 1.48508 * 109.47100 * 209.99859 * 15 13 11 18 18 H 1.48496 * 109.47480 * 329.99663 * 15 13 11 19 19 C 1.36627 * 119.73762 * 180.02562 * 2 1 3 20 20 H 1.09001 * 109.47280 * 269.97872 * 1 2 3 21 21 H 1.08993 * 109.47296 * 29.97647 * 1 2 3 22 22 H 1.08998 * 109.47066 * 149.98049 * 1 2 3 23 23 H 1.08003 * 119.66310 * 0.04845 * 3 2 1 24 24 H 1.07998 * 120.11741 * 179.68285 * 4 3 2 25 25 H 1.08000 * 126.50541 * 180.02562 * 7 6 5 26 26 H 1.07993 * 125.03603 * 179.97438 * 8 7 6 27 27 H 1.09003 * 109.46989 * 24.97121 * 10 9 8 28 28 H 1.08996 * 109.47108 * 144.97365 * 10 9 8 29 29 H 0.96993 * 119.99439 * 179.97438 * 14 13 11 30 30 H 1.08003 * 120.11638 * 359.95329 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2055 0.0000 4 6 3.5729 1.2279 -0.0055 5 6 4.2835 0.0318 -0.0009 6 6 3.5810 -1.1870 -0.0009 7 6 4.5986 -2.2407 -0.0015 8 6 5.7946 -1.6312 -0.0012 9 7 5.6261 -0.2733 0.0000 10 6 6.7124 0.7096 0.0001 11 6 7.0024 1.1377 1.4157 12 1 6.4340 0.7197 2.2335 13 6 7.9933 2.0629 1.6669 14 7 8.6858 2.5715 0.6711 15 14 8.3521 2.5940 3.4214 16 1 9.3825 1.7001 4.0083 17 1 8.8514 3.9927 3.4230 18 1 7.1080 2.5117 4.2279 19 6 2.1847 -1.1863 -0.0005 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3633 0.8901 -0.5134 22 1 -0.3633 -0.8898 -0.5141 23 1 1.6459 2.1351 0.0008 24 1 4.0995 2.1708 -0.0106 25 1 4.4204 -3.3059 -0.0020 26 1 6.7485 -2.1375 -0.0012 27 1 7.6066 0.2629 -0.4347 28 1 6.4168 1.5779 -0.5887 29 1 9.3826 3.2227 0.8479 30 1 1.6423 -2.1203 -0.0002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034626606.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:39 Heat of formation + Delta-G solvation = 43.615894 kcal Electronic energy + Delta-G solvation = -13542.177081 eV Core-core repulsion = 11302.201167 eV Total energy + Delta-G solvation = -2239.975914 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.48685 -36.87956 -33.48371 -31.61525 -31.16023 -28.64850 -27.03061 -25.55352 -22.93078 -21.89300 -20.06669 -19.37313 -16.76902 -16.15443 -15.59177 -14.55387 -14.44676 -13.91660 -13.35746 -13.29864 -13.13601 -12.48845 -12.21685 -12.00434 -11.76730 -11.48216 -11.13200 -11.02297 -10.80068 -10.52958 -10.35398 -10.08089 -9.65654 -8.88016 -8.67735 -7.39315 -6.87870 -6.26504 -4.37104 1.78190 2.26825 3.18664 3.25206 3.29872 3.49199 3.93208 4.28092 4.51622 5.05016 5.23857 5.38463 5.54032 5.66112 5.72242 5.87539 5.96874 6.09419 6.14546 6.35606 6.43707 6.58544 6.68149 6.84326 6.98739 7.04909 7.23177 7.48268 7.57286 7.64907 7.87439 8.14311 8.21557 8.71876 9.30706 10.78603 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.036355 B = 0.008068 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.994245 B = 3469.583012 C = 3849.659675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.130 4.130 3 C -0.117 4.117 4 C -0.107 4.107 5 C 0.102 3.898 6 C -0.115 4.115 7 C -0.242 4.242 8 C 0.069 3.931 9 N -0.454 5.454 10 C 0.235 3.765 11 C -0.541 4.541 12 H 0.065 0.935 13 C 0.065 3.935 14 N -0.892 5.892 15 Si 0.904 3.096 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.271 1.271 19 C -0.081 4.081 20 H 0.059 0.941 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.115 0.885 24 H 0.120 0.880 25 H 0.135 0.865 26 H 0.159 0.841 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.268 0.732 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.730 -4.827 -1.620 10.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.131 4.131 3 C -0.136 4.136 4 C -0.127 4.127 5 C -0.008 4.008 6 C -0.120 4.120 7 C -0.267 4.267 8 C -0.061 4.061 9 N -0.131 5.131 10 C 0.116 3.884 11 C -0.579 4.579 12 H 0.083 0.917 13 C -0.138 4.138 14 N -0.530 5.530 15 Si 0.731 3.269 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.196 1.196 19 C -0.100 4.100 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.133 0.867 24 H 0.138 0.862 25 H 0.153 0.847 26 H 0.177 0.823 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.259 -4.443 -1.672 10.405 hybrid contribution 0.526 0.380 0.974 1.170 sum -8.733 -4.063 -0.698 9.657 Atomic orbital electron populations 1.20628 0.92073 1.01720 1.01350 1.19191 0.95194 0.93074 1.05638 1.20521 0.92918 0.96964 1.03241 1.20133 0.93390 0.95845 1.03344 1.18281 0.83980 0.94843 1.03650 1.19197 0.92968 0.92817 1.07061 1.21413 0.90844 0.97369 1.17081 1.21802 0.99054 0.83183 1.02077 1.44815 1.05267 1.06176 1.56831 1.19683 0.83411 0.86620 0.98639 1.21389 1.19282 1.25152 0.92060 0.91727 1.24957 0.95325 0.95493 0.98056 1.69926 1.22416 1.29414 1.31200 0.86381 0.78804 0.77940 0.83761 1.20300 1.20847 1.19597 1.19924 0.91754 0.96875 1.01421 0.92206 0.92323 0.92398 0.86695 0.86172 0.84709 0.82348 0.93554 0.93869 0.92277 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 9.99 36.00 0.36 -0.87 16 2 C -0.13 -2.11 5.85 -104.99 -0.61 -2.72 16 3 C -0.12 -2.02 9.66 -39.54 -0.38 -2.41 16 4 C -0.11 -2.18 10.00 -39.43 -0.39 -2.57 16 5 C 0.10 2.23 6.81 -83.98 -0.57 1.66 16 6 C -0.12 -2.31 6.37 -105.14 -0.67 -2.98 16 7 C -0.24 -4.49 11.08 -37.67 -0.42 -4.90 16 8 C 0.07 1.36 11.27 -16.73 -0.19 1.17 16 9 N -0.45 -10.33 2.76 -115.71 -0.32 -10.65 16 10 C 0.23 5.93 5.76 -5.19 -0.03 5.90 16 11 C -0.54 -14.81 9.39 -34.44 -0.32 -15.13 16 12 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 13 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -25.12 13.29 55.43 0.74 -24.39 16 15 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 C -0.08 -1.41 9.67 -39.64 -0.38 -1.79 16 20 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 22 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 23 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 24 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 25 H 0.14 2.07 8.06 -52.49 -0.42 1.64 16 26 H 0.16 2.68 8.06 -52.49 -0.42 2.26 16 27 H 0.05 1.19 8.12 -51.93 -0.42 0.76 16 28 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 265.18 15.07 4.00 4.00 Total: -1.00 -29.10 265.18 -8.08 -37.19 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -3.77 Total: 0.76 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -3.71 Total: -22.97 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.42 Total: -35.04 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.10 -8.08 -37.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034626606.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.803 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds