Wall clock time and date at job start Mon Mar 30 2020 02:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38829 * 119.73831 * 2 1 4 4 C 1.37746 * 120.67245 * 180.26578 * 3 2 1 5 5 C 1.39133 * 119.77801 * 359.51605 * 4 3 2 6 6 C 1.40674 * 119.32586 * 0.47715 * 5 4 3 7 7 C 1.46486 * 106.03923 * 179.75931 * 6 5 4 8 8 C 1.34245 * 106.99583 * 0.02562 * 7 6 5 9 9 N 1.36827 * 109.92996 * 0.02562 * 8 7 6 10 10 C 1.46501 * 125.06464 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46999 * 264.97526 * 10 9 8 12 12 H 1.08009 * 120.00202 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00337 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99524 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00053 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47370 * 90.00080 * 15 13 11 17 17 H 1.48508 * 109.47100 * 209.99859 * 15 13 11 18 18 H 1.48496 * 109.47480 * 329.99663 * 15 13 11 19 19 C 1.36627 * 119.73762 * 180.02562 * 2 1 3 20 20 H 1.09001 * 109.47280 * 269.97872 * 1 2 3 21 21 H 1.08993 * 109.47296 * 29.97647 * 1 2 3 22 22 H 1.08998 * 109.47066 * 149.98049 * 1 2 3 23 23 H 1.08003 * 119.66310 * 0.04845 * 3 2 1 24 24 H 1.07998 * 120.11741 * 179.68285 * 4 3 2 25 25 H 1.08000 * 126.50541 * 180.02562 * 7 6 5 26 26 H 1.07993 * 125.03603 * 179.97438 * 8 7 6 27 27 H 1.09003 * 109.46989 * 24.97121 * 10 9 8 28 28 H 1.08996 * 109.47108 * 144.97365 * 10 9 8 29 29 H 0.96993 * 119.99439 * 179.97438 * 14 13 11 30 30 H 1.08003 * 120.11638 * 359.95329 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2055 0.0000 4 6 3.5729 1.2279 -0.0055 5 6 4.2835 0.0318 -0.0009 6 6 3.5810 -1.1870 -0.0009 7 6 4.5986 -2.2407 -0.0015 8 6 5.7946 -1.6312 -0.0012 9 7 5.6261 -0.2733 0.0000 10 6 6.7124 0.7096 0.0001 11 6 7.0024 1.1377 1.4157 12 1 6.4340 0.7197 2.2335 13 6 7.9933 2.0629 1.6669 14 7 8.6858 2.5715 0.6711 15 14 8.3521 2.5940 3.4214 16 1 9.3825 1.7001 4.0083 17 1 8.8514 3.9927 3.4230 18 1 7.1080 2.5117 4.2279 19 6 2.1847 -1.1863 -0.0005 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3633 0.8901 -0.5134 22 1 -0.3633 -0.8898 -0.5141 23 1 1.6459 2.1351 0.0008 24 1 4.0995 2.1708 -0.0106 25 1 4.4204 -3.3059 -0.0020 26 1 6.7485 -2.1375 -0.0012 27 1 7.6066 0.2629 -0.4347 28 1 6.4168 1.5779 -0.5887 29 1 9.3826 3.2227 0.8479 30 1 1.6423 -2.1203 -0.0002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034626606.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:38 Heat of formation + Delta-G solvation = 29.030091 kcal Electronic energy + Delta-G solvation = -13542.809568 eV Core-core repulsion = 11302.201167 eV Total energy + Delta-G solvation = -2240.608402 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.01024 -38.30327 -35.48152 -33.27504 -32.56807 -30.19067 -28.72928 -27.00287 -24.80015 -23.35606 -21.49165 -20.92762 -18.84656 -17.85320 -17.05934 -16.45617 -15.79316 -15.56626 -14.87624 -14.74749 -14.44151 -14.05289 -13.85585 -13.53962 -13.26789 -12.95541 -12.80305 -12.68968 -12.37614 -12.23573 -12.08041 -11.56789 -11.48657 -10.78241 -10.42076 -8.87757 -8.54810 -8.21705 -6.55343 0.32701 0.83208 1.33764 1.34514 1.46320 1.96636 2.24493 2.38685 2.92423 3.06648 3.87373 4.05726 4.20117 4.25582 4.43732 4.62975 4.68292 4.86378 4.89311 4.97482 4.99814 5.04282 5.14489 5.29690 5.33644 5.50650 5.61206 5.79891 5.86498 6.04256 6.16966 6.41343 6.57633 6.70731 7.17634 8.69190 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.036355 B = 0.008068 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.994245 B = 3469.583012 C = 3849.659675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.127 4.127 3 C -0.107 4.107 4 C -0.142 4.142 5 C 0.063 3.937 6 C -0.135 4.135 7 C -0.226 4.226 8 C 0.042 3.958 9 N -0.475 5.475 10 C 0.252 3.748 11 C -0.556 4.556 12 H 0.050 0.950 13 C 0.020 3.980 14 N -0.920 5.920 15 Si 0.970 3.030 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.273 1.273 19 C -0.082 4.082 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.143 0.857 24 H 0.100 0.900 25 H 0.172 0.828 26 H 0.178 0.822 27 H 0.035 0.965 28 H 0.018 0.982 29 H 0.273 0.727 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.763 -5.779 -0.804 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.128 4.128 3 C -0.126 4.126 4 C -0.163 4.163 5 C -0.044 4.044 6 C -0.140 4.140 7 C -0.251 4.251 8 C -0.086 4.086 9 N -0.155 5.155 10 C 0.132 3.868 11 C -0.594 4.594 12 H 0.068 0.932 13 C -0.181 4.181 14 N -0.559 5.559 15 Si 0.794 3.206 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.198 1.198 19 C -0.100 4.100 20 H 0.092 0.908 21 H 0.092 0.908 22 H 0.095 0.905 23 H 0.161 0.839 24 H 0.118 0.882 25 H 0.189 0.811 26 H 0.195 0.805 27 H 0.053 0.947 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.311 -5.420 -0.867 12.572 hybrid contribution 1.020 0.664 0.671 1.390 sum -10.291 -4.756 -0.196 11.339 Atomic orbital electron populations 1.20696 0.88492 1.03491 1.02749 1.19723 0.97697 0.92066 1.03303 1.20921 0.91702 0.99031 1.00995 1.20256 0.94965 0.94890 1.06174 1.18761 0.83962 0.96443 1.05268 1.19634 0.94448 0.92288 1.07581 1.21848 0.89738 0.98765 1.14722 1.22292 1.00805 0.82219 1.03235 1.44691 1.05039 1.06757 1.59001 1.19190 0.83912 0.86504 0.97195 1.21533 1.19566 1.25774 0.92563 0.93189 1.25796 0.94871 0.95209 1.02233 1.70016 1.22820 1.29809 1.33225 0.85364 0.78586 0.78033 0.78603 1.19141 1.19763 1.19773 1.20362 0.90718 0.98804 1.00142 0.90814 0.90825 0.90509 0.83940 0.88156 0.81072 0.80495 0.94730 0.96432 0.91796 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 9.99 71.23 0.71 -1.22 16 2 C -0.13 -3.75 5.85 -20.10 -0.12 -3.87 16 3 C -0.11 -3.59 9.66 22.29 0.22 -3.37 16 4 C -0.14 -6.00 10.00 22.37 0.22 -5.78 16 5 C 0.06 2.87 6.81 39.03 0.27 3.14 16 6 C -0.13 -5.26 6.37 -20.20 -0.13 -5.39 16 7 C -0.23 -8.08 11.08 23.51 0.26 -7.82 16 8 C 0.04 1.68 11.27 83.00 0.94 2.62 16 9 N -0.48 -22.61 2.76 -519.99 -1.44 -24.04 16 10 C 0.25 13.49 5.76 85.63 0.49 13.98 16 11 C -0.56 -31.70 9.39 25.60 0.24 -31.46 16 12 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 13 C 0.02 1.09 5.46 84.65 0.46 1.56 16 14 N -0.92 -53.08 13.29 21.45 0.28 -52.79 16 15 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 19 C -0.08 -2.62 9.67 22.23 0.22 -2.40 16 20 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 22 H 0.08 1.27 8.07 -2.39 -0.02 1.25 16 23 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 24 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 25 H 0.17 4.70 8.06 -2.91 -0.02 4.68 16 26 H 0.18 6.06 8.06 -2.91 -0.02 6.04 16 27 H 0.03 1.88 8.12 -2.39 -0.02 1.86 16 28 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -64.33 265.18 5.77 -58.56 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.11 Total: 12.64 kcal Atomic # 6 Polarization: -43.79 SS G_CDS: 3.78 Total: -40.02 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -1.15 Total: -76.84 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -64.33 5.77 -58.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034626606.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.593 kcal (2) G-P(sol) polarization free energy of solvation -64.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds