Wall clock time and date at job start Mon Mar 30 2020 02:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47040 * 2 1 4 4 C 1.38670 * 119.87685 * 270.01966 * 3 2 1 5 5 C 1.37868 * 120.62938 * 179.97438 * 4 3 2 6 6 C 1.39125 * 119.96529 * 359.72335 * 5 4 3 7 7 N 1.38156 * 132.80310 * 179.60964 * 6 5 4 8 8 H 0.97000 * 124.68990 * 0.67749 * 7 6 5 9 9 C 1.35634 * 110.61591 * 180.41934 * 7 6 5 10 10 C 1.38901 * 109.28755 * 0.26456 * 9 7 6 11 11 C 1.40891 * 126.93119 * 180.02562 * 10 9 7 12 12 H 1.08006 * 119.99434 * 186.68478 * 11 10 9 13 13 C 1.39739 * 120.00201 * 6.67933 * 11 10 9 14 14 N 1.31051 * 119.99764 * 11.01299 * 13 11 10 15 15 Si 1.86799 * 119.99840 * 191.00968 * 13 11 10 16 16 H 1.48495 * 109.47045 * 94.11947 * 15 13 11 17 17 H 1.48497 * 109.47135 * 214.11731 * 15 13 11 18 18 H 1.48495 * 109.47397 * 334.11775 * 15 13 11 19 19 C 1.40343 * 119.29803 * 0.53084 * 6 5 4 20 20 C 1.37883 * 119.87207 * 90.00164 * 3 2 1 21 21 H 1.08999 * 109.46847 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47055 * 299.99717 * 1 2 3 23 23 H 1.08998 * 109.47094 * 60.00104 * 1 2 3 24 24 H 1.09005 * 109.46832 * 240.00152 * 2 1 3 25 25 H 1.08995 * 109.47090 * 120.00428 * 2 1 3 26 26 H 1.07997 * 119.68646 * 0.02938 * 4 3 2 27 27 H 1.07989 * 120.02024 * 179.97438 * 5 4 3 28 28 H 1.08001 * 125.35848 * 180.26432 * 9 7 6 29 29 H 0.97004 * 119.99621 * 180.02562 * 14 13 11 30 30 H 1.07999 * 120.15635 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0722 -1.2024 5 6 2.7212 3.3721 -1.2205 6 6 2.9525 4.0441 -0.0245 7 7 3.4074 5.3161 0.2648 8 1 3.6428 5.9826 -0.3995 9 6 3.4739 5.5060 1.6062 10 6 3.0650 4.3475 2.2543 11 6 2.9898 4.1374 3.6455 12 1 2.7588 3.1555 4.0315 13 6 3.2142 5.1993 4.5257 14 7 3.2800 6.4259 4.0692 15 14 3.4203 4.8702 6.3528 16 1 4.8646 4.7402 6.6726 17 1 2.8414 5.9973 7.1272 18 1 2.7188 3.6114 6.7114 19 6 2.7243 3.3809 1.1911 20 6 2.2613 2.0682 1.1956 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 2.0791 1.5566 -2.1335 27 1 2.8973 3.8698 -2.1625 28 1 3.7943 6.4149 2.0936 29 1 3.4361 7.1630 4.6802 30 1 2.0819 1.5594 2.1312 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035635631.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:07 Heat of formation + Delta-G solvation = 30.852219 kcal Electronic energy + Delta-G solvation = -13576.780855 eV Core-core repulsion = 11336.251467 eV Total energy + Delta-G solvation = -2240.529388 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.65256 -36.46596 -33.56096 -32.35268 -30.62624 -27.96502 -27.36000 -24.80658 -23.00119 -21.28349 -19.97157 -19.11509 -17.05257 -15.83831 -15.19329 -14.61359 -14.28568 -13.72298 -13.15587 -12.81864 -12.72787 -12.54276 -12.36166 -11.70767 -11.36194 -11.19853 -11.14025 -10.67123 -10.53374 -10.20572 -10.17056 -9.73340 -9.55007 -9.29490 -8.33380 -6.90577 -6.60210 -6.49251 -3.93879 2.26356 2.62498 3.10897 3.19265 3.23566 4.11212 4.21412 4.59933 4.81161 5.43906 5.45556 5.60331 5.78233 5.85532 5.93909 6.08645 6.20114 6.27536 6.41398 6.58018 6.63915 6.76636 6.94508 7.20871 7.23809 7.38359 7.61469 7.74683 7.83770 8.10195 8.36371 8.71206 9.04260 9.15976 9.24285 10.50855 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.033124 B = 0.008926 C = 0.007236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.095954 B = 3136.170256 C = 3868.661449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.068 4.068 3 C -0.158 4.158 4 C -0.110 4.110 5 C -0.154 4.154 6 C 0.083 3.917 7 N -0.592 5.592 8 H 0.393 0.607 9 C -0.094 4.094 10 C 0.019 3.981 11 C -0.421 4.421 12 H 0.071 0.929 13 C 0.058 3.942 14 N -0.831 5.831 15 Si 0.912 3.088 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.266 1.266 19 C -0.125 4.125 20 C -0.052 4.052 21 H 0.046 0.954 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.182 0.818 29 H 0.272 0.728 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.455 -5.245 -5.493 7.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.160 4.160 4 C -0.129 4.129 5 C -0.175 4.175 6 C -0.028 4.028 7 N -0.193 5.193 8 H 0.226 0.774 9 C -0.217 4.217 10 C 0.014 3.986 11 C -0.454 4.454 12 H 0.089 0.911 13 C -0.153 4.153 14 N -0.461 5.461 15 Si 0.739 3.261 16 H -0.200 1.200 17 H -0.207 1.207 18 H -0.190 1.190 19 C -0.132 4.132 20 C -0.070 4.070 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.199 0.801 29 H 0.083 0.917 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.383 -4.875 -5.350 7.369 hybrid contribution 0.217 0.377 0.521 0.679 sum -1.166 -4.498 -4.829 6.702 Atomic orbital electron populations 1.21765 0.96007 1.00370 1.02063 1.20280 0.95197 0.93768 1.01288 1.19226 1.07751 0.96043 0.93012 1.20245 1.02236 0.94009 0.96408 1.19755 1.08125 0.95404 0.94251 1.18252 1.03049 0.86723 0.94754 1.41489 1.59056 1.10872 1.07893 0.77402 1.22922 1.16489 1.03308 0.79005 1.18076 0.99099 0.89928 0.91532 1.18701 1.41289 0.95834 0.89558 0.91099 1.25643 0.94438 0.94441 1.00734 1.69618 1.40733 0.99357 1.36439 0.86218 0.78928 0.78675 0.82321 1.19958 1.20706 1.19013 1.19472 1.05726 0.94442 0.93565 1.20221 0.97368 0.93077 0.96348 0.93528 0.92647 0.93002 0.92373 0.92111 0.87787 0.88242 0.80125 0.91702 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.90 37.16 0.37 -1.62 16 2 C -0.07 -1.03 6.06 -27.88 -0.17 -1.20 16 3 C -0.16 -3.01 5.13 -104.59 -0.54 -3.54 16 4 C -0.11 -2.02 9.67 -39.56 -0.38 -2.41 16 5 C -0.15 -3.03 10.07 -39.39 -0.40 -3.43 16 6 C 0.08 1.91 7.23 -83.89 -0.61 1.31 16 7 N -0.59 -13.23 5.99 -9.81 -0.06 -13.29 16 8 H 0.39 7.19 8.96 -40.82 -0.37 6.83 16 9 C -0.09 -2.42 10.85 -15.63 -0.17 -2.59 16 10 C 0.02 0.52 6.07 -104.79 -0.64 -0.12 16 11 C -0.42 -11.63 9.40 -38.02 -0.36 -11.99 16 12 H 0.07 1.90 7.87 -52.48 -0.41 1.48 16 13 C 0.06 1.51 5.45 -17.32 -0.09 1.42 16 14 N -0.83 -22.02 10.57 55.54 0.59 -21.43 16 15 Si 0.91 19.77 29.57 -169.99 -5.03 14.74 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 19 C -0.13 -3.14 6.33 -104.90 -0.66 -3.81 16 20 C -0.05 -1.14 9.73 -39.36 -0.38 -1.53 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 25 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 26 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 27 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 28 H 0.18 4.79 5.95 -52.49 -0.31 4.47 16 29 H 0.27 6.64 8.30 -40.82 -0.34 6.30 16 30 H 0.11 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 259.19 15.07 3.91 3.91 Total: -1.00 -28.70 259.19 -8.22 -36.92 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -3.60 Total: 8.64 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: -4.03 Total: -29.49 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.53 Total: -34.72 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.74 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.70 -8.22 -36.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035635631.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.776 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds