Wall clock time and date at job start Mon Mar 30 2020 02:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47011 * 2 1 4 4 C 1.38672 * 119.68891 * 90.00082 * 3 2 1 5 5 C 1.37880 * 120.25049 * 179.74013 * 4 3 2 6 6 C 1.39191 * 119.69731 * 0.25589 * 5 4 3 7 7 C 1.47674 * 133.77934 * 179.97438 * 6 5 4 8 8 C 1.40884 * 126.92898 * 359.97438 * 7 6 5 9 9 H 1.08002 * 120.00120 * 359.97438 * 8 7 6 10 10 C 1.39736 * 119.99915 * 179.97438 * 8 7 6 11 11 N 1.31061 * 120.00072 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00380 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47072 * 89.99440 * 12 10 8 14 14 H 1.48499 * 109.47520 * 209.99724 * 12 10 8 15 15 H 1.48501 * 109.47024 * 330.00152 * 12 10 8 16 16 C 1.38890 * 106.13568 * 180.02562 * 7 6 5 17 17 N 1.35643 * 109.28861 * 0.02562 * 16 7 6 18 18 H 0.97000 * 124.69115 * 179.97438 * 17 16 7 19 19 C 1.38151 * 110.61479 * 359.97438 * 17 16 7 20 20 C 1.37865 * 119.68753 * 270.27537 * 3 2 1 21 21 H 1.08999 * 109.47048 * 300.00299 * 1 2 3 22 22 H 1.08999 * 109.46953 * 59.99660 * 1 2 3 23 23 H 1.08992 * 109.47204 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47048 * 239.99701 * 2 1 3 25 25 H 1.09000 * 109.47084 * 119.99806 * 2 1 3 26 26 H 1.08002 * 119.87665 * 0.02562 * 4 3 2 27 27 H 1.08005 * 120.15156 * 180.23211 * 5 4 3 28 28 H 0.96992 * 119.99952 * 179.97438 * 11 10 8 29 29 H 1.08002 * 125.36156 * 180.02562 * 16 7 6 30 30 H 1.08001 * 120.01591 * 359.95927 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2613 2.0683 1.2047 5 6 2.7259 3.3664 1.2182 6 6 2.9598 4.0277 0.0159 7 6 3.4425 5.3800 -0.3293 8 6 3.8093 6.4024 0.5678 9 1 3.7502 6.2333 1.6328 10 6 4.2497 7.6354 0.0796 11 7 4.3220 7.8406 -1.2129 12 14 4.7356 8.9915 1.2689 13 1 6.1826 8.8794 1.5830 14 1 4.4644 10.3137 0.6497 15 1 3.9460 8.8592 2.5196 16 6 3.4606 5.4408 -1.7168 17 7 3.0351 4.2564 -2.2228 18 1 2.9602 4.0552 -3.1687 19 6 2.7233 3.3763 -1.2045 20 6 2.2545 2.0665 -1.1977 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.0794 1.5524 2.1359 27 1 2.9073 3.8680 2.1574 28 1 4.6273 8.6965 -1.5517 29 1 3.7655 6.2965 -2.3010 30 1 2.0693 1.5541 -2.1302 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035635637.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:11 Heat of formation + Delta-G solvation = 30.845827 kcal Electronic energy + Delta-G solvation = -13522.842886 eV Core-core repulsion = 11282.313220 eV Total energy + Delta-G solvation = -2240.529666 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.64905 -36.48874 -33.49076 -32.68985 -30.16555 -28.41709 -27.18208 -24.85580 -22.79961 -21.63929 -19.48862 -19.47134 -16.94153 -15.83964 -15.28545 -14.60344 -14.24917 -13.81288 -13.20474 -12.85926 -12.70250 -12.57342 -12.44207 -11.92741 -11.18301 -11.09589 -10.99164 -10.80555 -10.60031 -10.25246 -10.21051 -9.69802 -9.54228 -9.39240 -8.27716 -6.96953 -6.54771 -6.45742 -3.95912 2.24831 2.65140 3.11969 3.18992 3.23772 4.11482 4.23448 4.59109 4.81681 5.33520 5.37065 5.62487 5.73322 5.81762 5.96553 6.01486 6.11675 6.18049 6.44087 6.46235 6.56632 6.77162 6.92557 7.23087 7.25304 7.44733 7.58896 7.74830 7.89563 8.11451 8.36986 8.72750 9.06646 9.17799 9.26528 10.52218 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.054260 B = 0.007429 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.911998 B = 3767.924388 C = 4185.860545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C -0.083 4.083 4 C -0.186 4.186 5 C -0.057 4.057 6 C -0.128 4.128 7 C 0.012 3.988 8 C -0.415 4.415 9 H 0.070 0.930 10 C 0.054 3.946 11 N -0.836 5.836 12 Si 0.917 3.083 13 H -0.274 1.274 14 H -0.281 1.281 15 H -0.266 1.266 16 C -0.093 4.093 17 N -0.593 5.593 18 H 0.393 0.607 19 C 0.087 3.913 20 C -0.150 4.150 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.108 0.892 28 H 0.272 0.728 29 H 0.192 0.808 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.374 -7.905 0.188 8.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.084 4.084 4 C -0.206 4.206 5 C -0.075 4.075 6 C -0.135 4.135 7 C 0.007 3.993 8 C -0.448 4.448 9 H 0.088 0.912 10 C -0.156 4.156 11 N -0.467 5.467 12 Si 0.743 3.257 13 H -0.200 1.200 14 H -0.207 1.207 15 H -0.191 1.191 16 C -0.217 4.217 17 N -0.194 5.194 18 H 0.226 0.774 19 C -0.025 4.025 20 C -0.172 4.172 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.126 0.874 28 H 0.083 0.917 29 H 0.208 0.792 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.272 -7.600 -0.063 8.275 hybrid contribution 0.230 0.632 0.012 0.673 sum -3.042 -6.968 -0.051 7.603 Atomic orbital electron populations 1.21739 0.95656 1.00549 1.02171 1.20381 0.95454 0.93746 1.01542 1.19118 1.01672 0.94992 0.92639 1.20364 1.08484 0.95586 0.96171 1.20362 0.97144 0.93540 0.96501 1.19486 1.06202 0.96256 0.91583 1.18110 0.99700 0.89803 0.91695 1.18719 1.36993 0.95443 0.93665 0.91162 1.25635 0.95122 0.99339 0.95483 1.69442 1.39986 1.24226 1.13053 0.86159 0.79228 0.79612 0.80709 1.19985 1.20655 1.19080 1.23353 1.14493 0.88755 0.95129 1.41573 1.59209 1.12726 1.05935 0.77425 1.18234 1.03272 0.91852 0.89097 1.19586 1.08134 0.92692 0.96804 0.92656 0.92829 0.93339 0.92139 0.91861 0.87905 0.87421 0.91683 0.79214 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.90 37.16 0.37 -1.45 16 2 C -0.07 -1.04 6.05 -27.88 -0.17 -1.21 16 3 C -0.08 -1.52 5.13 -104.60 -0.54 -2.06 16 4 C -0.19 -3.59 9.68 -39.55 -0.38 -3.98 16 5 C -0.06 -1.27 10.09 -39.36 -0.40 -1.67 16 6 C -0.13 -3.24 6.33 -104.90 -0.66 -3.90 16 7 C 0.01 0.33 6.10 -104.80 -0.64 -0.31 16 8 C -0.42 -11.50 9.42 -38.02 -0.36 -11.85 16 9 H 0.07 1.88 7.84 -52.49 -0.41 1.47 16 10 C 0.05 1.40 5.49 -17.32 -0.10 1.31 16 11 N -0.84 -22.10 10.33 55.54 0.57 -21.52 16 12 Si 0.92 19.83 29.56 -169.99 -5.02 14.80 16 13 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 14 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 15 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 16 C -0.09 -2.43 10.88 -15.63 -0.17 -2.60 16 17 N -0.59 -13.32 5.99 -9.81 -0.06 -13.38 16 18 H 0.39 7.24 8.96 -40.82 -0.37 6.87 16 19 C 0.09 2.00 7.23 -83.89 -0.61 1.39 16 20 C -0.15 -2.98 9.70 -39.39 -0.38 -3.36 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 25 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 26 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 27 H 0.11 2.27 8.06 -52.48 -0.42 1.85 16 28 H 0.27 6.64 8.30 -40.82 -0.34 6.30 16 29 H 0.19 5.06 5.68 -52.49 -0.30 4.76 16 30 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 258.75 15.07 3.90 3.90 Total: -1.00 -28.76 258.75 -8.23 -36.99 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -3.59 Total: 8.91 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: -4.03 Total: -29.70 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.52 Total: -34.90 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.76 -8.23 -36.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035635637.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.838 kcal (2) G-P(sol) polarization free energy of solvation -28.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds