Wall clock time and date at job start Mon Mar 30 2020 02:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47011 * 2 1 4 4 C 1.38672 * 119.68891 * 90.00082 * 3 2 1 5 5 C 1.37880 * 120.25049 * 179.74013 * 4 3 2 6 6 C 1.39191 * 119.69731 * 0.25589 * 5 4 3 7 7 C 1.47674 * 133.77934 * 179.97438 * 6 5 4 8 8 C 1.40884 * 126.92898 * 359.97438 * 7 6 5 9 9 H 1.08002 * 120.00120 * 359.97438 * 8 7 6 10 10 C 1.39736 * 119.99915 * 179.97438 * 8 7 6 11 11 N 1.31061 * 120.00072 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00380 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47072 * 89.99440 * 12 10 8 14 14 H 1.48499 * 109.47520 * 209.99724 * 12 10 8 15 15 H 1.48501 * 109.47024 * 330.00152 * 12 10 8 16 16 C 1.38890 * 106.13568 * 180.02562 * 7 6 5 17 17 N 1.35643 * 109.28861 * 0.02562 * 16 7 6 18 18 H 0.97000 * 124.69115 * 179.97438 * 17 16 7 19 19 C 1.38151 * 110.61479 * 359.97438 * 17 16 7 20 20 C 1.37865 * 119.68753 * 270.27537 * 3 2 1 21 21 H 1.08999 * 109.47048 * 300.00299 * 1 2 3 22 22 H 1.08999 * 109.46953 * 59.99660 * 1 2 3 23 23 H 1.08992 * 109.47204 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47048 * 239.99701 * 2 1 3 25 25 H 1.09000 * 109.47084 * 119.99806 * 2 1 3 26 26 H 1.08002 * 119.87665 * 0.02562 * 4 3 2 27 27 H 1.08005 * 120.15156 * 180.23211 * 5 4 3 28 28 H 0.96992 * 119.99952 * 179.97438 * 11 10 8 29 29 H 1.08002 * 125.36156 * 180.02562 * 16 7 6 30 30 H 1.08001 * 120.01591 * 359.95927 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2613 2.0683 1.2047 5 6 2.7259 3.3664 1.2182 6 6 2.9598 4.0277 0.0159 7 6 3.4425 5.3800 -0.3293 8 6 3.8093 6.4024 0.5678 9 1 3.7502 6.2333 1.6328 10 6 4.2497 7.6354 0.0796 11 7 4.3220 7.8406 -1.2129 12 14 4.7356 8.9915 1.2689 13 1 6.1826 8.8794 1.5830 14 1 4.4644 10.3137 0.6497 15 1 3.9460 8.8592 2.5196 16 6 3.4606 5.4408 -1.7168 17 7 3.0351 4.2564 -2.2228 18 1 2.9602 4.0552 -3.1687 19 6 2.7233 3.3763 -1.2045 20 6 2.2545 2.0665 -1.1977 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.0794 1.5524 2.1359 27 1 2.9073 3.8680 2.1574 28 1 4.6273 8.6965 -1.5517 29 1 3.7655 6.2965 -2.3010 30 1 2.0693 1.5541 -2.1302 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035635637.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:11 Heat of formation + Delta-G solvation = 15.278435 kcal Electronic energy + Delta-G solvation = -13523.517938 eV Core-core repulsion = 11282.313220 eV Total energy + Delta-G solvation = -2241.204718 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.39704 -38.06382 -35.43303 -34.08419 -31.87080 -30.15809 -28.79107 -26.74598 -24.14204 -23.28001 -21.40161 -21.04326 -18.71038 -17.80419 -16.99513 -16.06984 -15.92510 -15.14090 -14.87104 -14.46728 -14.38737 -14.11363 -13.94109 -13.23238 -13.01128 -12.91221 -12.63200 -12.12821 -11.94987 -11.78997 -11.68519 -11.65023 -11.29014 -11.23129 -10.04572 -8.69860 -8.41056 -8.39963 -5.98161 0.56177 0.99852 1.40438 1.41302 1.54556 2.30125 2.30641 2.89180 3.09635 3.64217 4.07579 4.14838 4.41502 4.47792 4.65606 4.79910 4.80731 4.84890 4.99085 5.15000 5.21760 5.28561 5.35088 5.47075 5.51472 5.72856 5.96542 5.97320 6.02015 6.24578 6.57354 6.79543 7.12173 7.21993 7.42353 8.58965 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.054260 B = 0.007429 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.911998 B = 3767.924388 C = 4185.860545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 C -0.072 4.072 4 C -0.174 4.174 5 C -0.080 4.080 6 C -0.171 4.171 7 C -0.032 4.032 8 C -0.454 4.454 9 H 0.063 0.937 10 C 0.010 3.990 11 N -0.860 5.860 12 Si 0.988 3.012 13 H -0.268 1.268 14 H -0.270 1.270 15 H -0.265 1.265 16 C -0.106 4.106 17 N -0.589 5.589 18 H 0.410 0.590 19 C 0.077 3.923 20 C -0.153 4.153 21 H 0.049 0.951 22 H 0.046 0.954 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.136 0.864 27 H 0.106 0.894 28 H 0.279 0.721 29 H 0.180 0.820 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 -9.923 0.671 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.074 4.074 4 C -0.194 4.194 5 C -0.098 4.098 6 C -0.178 4.178 7 C -0.037 4.037 8 C -0.487 4.487 9 H 0.081 0.919 10 C -0.197 4.197 11 N -0.492 5.492 12 Si 0.811 3.189 13 H -0.193 1.193 14 H -0.195 1.195 15 H -0.189 1.189 16 C -0.231 4.231 17 N -0.192 5.192 18 H 0.246 0.754 19 C -0.034 4.034 20 C -0.175 4.175 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.154 0.846 27 H 0.124 0.876 28 H 0.089 0.911 29 H 0.196 0.804 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.001 -9.651 0.395 10.455 hybrid contribution 0.382 1.056 -0.129 1.131 sum -3.620 -8.595 0.266 9.330 Atomic orbital electron populations 1.21723 0.94343 1.02275 1.01591 1.20485 0.96392 0.90616 1.03410 1.19724 0.99054 0.97036 0.91560 1.20790 1.06103 0.94252 0.98263 1.20565 0.98489 0.95060 0.95720 1.19777 1.08254 0.96045 0.93715 1.18584 1.00995 0.91419 0.92698 1.18961 1.39240 0.96989 0.93539 0.91874 1.26510 0.94575 1.01215 0.97350 1.69523 1.40179 1.25048 1.14428 0.85082 0.78917 0.76603 0.78314 1.19275 1.19466 1.18874 1.23131 1.15281 0.89782 0.94893 1.41380 1.59256 1.11735 1.06877 0.75408 1.18630 1.03305 0.93016 0.88412 1.19999 1.07210 0.91339 0.98931 0.93211 0.93528 0.90532 0.90420 0.89987 0.84578 0.87557 0.91054 0.80367 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.90 71.98 0.71 -2.26 16 2 C -0.07 -1.68 6.05 29.85 0.18 -1.50 16 3 C -0.07 -2.42 5.13 -19.85 -0.10 -2.53 16 4 C -0.17 -6.34 9.68 22.29 0.22 -6.12 16 5 C -0.08 -3.58 10.09 22.41 0.23 -3.36 16 6 C -0.17 -8.89 6.33 -20.04 -0.13 -9.02 16 7 C -0.03 -1.83 6.10 -19.98 -0.12 -1.95 16 8 C -0.45 -26.43 9.42 23.28 0.22 -26.21 16 9 H 0.06 3.57 7.84 -2.91 -0.02 3.55 16 10 C 0.01 0.55 5.49 85.17 0.47 1.02 16 11 N -0.86 -47.03 10.33 21.80 0.23 -46.81 16 12 Si 0.99 41.51 29.56 68.60 2.03 43.53 16 13 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 14 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 15 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 16 C -0.11 -5.78 10.88 84.26 0.92 -4.87 16 17 N -0.59 -26.94 5.99 -184.94 -1.11 -28.04 16 18 H 0.41 15.17 8.96 -92.71 -0.83 14.34 16 19 C 0.08 3.55 7.23 38.87 0.28 3.83 16 20 C -0.15 -5.72 9.70 22.39 0.22 -5.50 16 21 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.08 1.62 8.08 -2.39 -0.02 1.60 16 25 H 0.08 1.68 8.08 -2.39 -0.02 1.66 16 26 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 27 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 28 H 0.28 13.91 8.30 -92.71 -0.77 13.14 16 29 H 0.18 10.02 5.68 -2.91 -0.02 10.00 16 30 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -64.59 258.75 4.55 -60.05 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 0.31 Total: 29.73 kcal Atomic # 6 Polarization: -61.55 SS G_CDS: 3.09 Total: -58.46 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -0.88 Total: -74.85 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -64.59 4.55 -60.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035635637.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.326 kcal (2) G-P(sol) polarization free energy of solvation -64.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds