Wall clock time and date at job start Mon Mar 30 2020 02:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46684 * 179.97438 * 10 9 7 12 12 C 1.36834 * 125.06389 * 264.69754 * 11 10 9 13 13 C 1.34242 * 109.92869 * 179.81895 * 12 11 10 14 14 C 1.46490 * 106.99471 * 0.43458 * 13 12 11 15 15 C 1.39630 * 134.02989 * 179.76581 * 14 13 12 16 16 C 1.36622 * 119.76700 * 179.97438 * 15 14 13 17 17 C 1.38834 * 120.52653 * 0.02562 * 16 15 14 18 18 C 1.37748 * 120.66738 * 359.97426 * 17 16 15 19 19 C 1.37691 * 125.06104 * 85.00616 * 11 10 9 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 22 22 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 23 23 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 24 24 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 25 25 H 1.07997 * 125.03249 * 359.97438 * 12 11 10 26 26 H 1.07998 * 126.50160 * 180.15005 * 13 12 11 27 27 H 1.08003 * 120.11303 * 0.02562 * 15 14 13 28 28 H 1.08001 * 119.73581 * 180.02562 * 16 15 14 29 29 H 1.08001 * 119.66446 * 180.02562 * 17 16 15 30 30 H 1.07997 * 120.10971 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 7 1.5127 -4.9308 -0.0033 12 6 1.2097 -5.6640 1.1116 13 6 0.5301 -6.7678 0.7625 14 6 0.3954 -6.7444 -0.6960 15 6 -0.1935 -7.5990 -1.6300 16 6 -0.1481 -7.2858 -2.9591 17 6 0.4795 -6.1244 -3.3889 18 6 1.0668 -5.2672 -2.4846 19 6 1.0319 -5.5660 -1.1263 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6247 -2.5562 -0.8920 23 1 2.8720 -3.6035 -0.8927 24 1 2.8719 -3.6051 0.8873 25 1 1.4755 -5.3933 2.1228 26 1 0.1578 -7.5309 1.4299 27 1 -0.6838 -8.5040 -1.3029 28 1 -0.6042 -7.9469 -3.6811 29 1 0.5067 -5.8902 -4.4429 30 1 1.5529 -4.3664 -2.8289 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036459161.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:33 Heat of formation + Delta-G solvation = 46.872060 kcal Electronic energy + Delta-G solvation = -13444.722285 eV Core-core repulsion = 11204.887569 eV Total energy + Delta-G solvation = -2239.834716 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.79279 -36.69555 -33.95673 -32.21322 -30.37638 -28.62412 -28.08900 -24.78739 -22.35340 -21.57196 -20.88852 -19.55149 -16.88343 -16.06149 -15.87789 -15.04433 -14.71525 -14.06088 -13.82330 -13.40607 -12.92690 -12.56122 -12.30787 -12.15806 -11.70511 -11.30209 -11.08477 -11.03069 -10.64723 -10.44805 -10.16686 -9.84723 -9.37213 -9.13918 -8.50211 -7.72596 -7.15188 -6.13893 -4.19924 1.54988 2.06948 3.18590 3.23982 3.30362 3.32763 3.48106 4.33487 4.35385 5.10536 5.21866 5.24775 5.37353 5.42730 5.63207 5.81426 5.96155 6.11652 6.12682 6.21077 6.32427 6.47301 6.50961 6.86078 6.97300 7.19410 7.25679 7.45220 7.49424 7.74365 7.78452 7.92041 8.19148 8.86228 9.45488 10.97003 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.043644 B = 0.006913 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.400263 B = 4049.195080 C = 4381.064871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.012 3.988 10 C 0.107 3.893 11 N -0.470 5.470 12 C 0.062 3.938 13 C -0.227 4.227 14 C -0.115 4.115 15 C -0.079 4.079 16 C -0.155 4.155 17 C -0.112 4.112 18 C -0.117 4.117 19 C 0.101 3.899 20 H 0.263 0.737 21 H 0.022 0.978 22 H 0.023 0.977 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.163 0.837 26 H 0.140 0.860 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 -11.742 -1.870 12.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.026 4.026 10 C -0.013 4.013 11 N -0.149 5.149 12 C -0.065 4.065 13 C -0.253 4.253 14 C -0.120 4.120 15 C -0.098 4.098 16 C -0.174 4.174 17 C -0.132 4.132 18 C -0.137 4.137 19 C -0.006 4.006 20 H 0.073 0.927 21 H 0.040 0.960 22 H 0.041 0.959 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.180 0.820 26 H 0.157 0.843 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.794 -11.291 -1.827 11.577 hybrid contribution 0.357 1.096 0.083 1.156 sum 2.151 -10.194 -1.744 10.564 Atomic orbital electron populations 1.69975 1.06152 1.26989 1.49564 1.25012 0.94863 0.99436 0.94823 0.86518 0.79759 0.83038 0.78255 1.20481 1.21066 1.19753 1.21024 0.93022 0.90443 1.52367 0.92330 1.19442 0.94113 0.90620 0.98383 1.22274 0.95569 0.81004 1.02415 1.44557 1.46448 1.19730 1.04200 1.21836 1.00465 0.92566 0.91662 1.21508 1.09794 1.01082 0.92869 1.19224 1.03159 0.95906 0.93664 1.20144 0.99058 0.98368 0.92205 1.20497 1.03267 0.98275 0.95398 1.20703 0.99117 0.94721 0.98610 1.20145 1.03199 1.00656 0.89711 1.18300 0.99882 0.93696 0.88761 0.92702 0.95954 0.95857 0.90802 0.90359 0.81952 0.84250 0.86780 0.86753 0.86324 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -14.46 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.01 0.31 5.30 -27.88 -0.15 0.16 16 10 C 0.11 2.18 5.94 -4.04 -0.02 2.16 16 11 N -0.47 -9.10 2.78 -114.42 -0.32 -9.41 16 12 C 0.06 1.06 11.27 -16.73 -0.19 0.87 16 13 C -0.23 -3.71 11.08 -37.67 -0.42 -4.13 16 14 C -0.11 -2.05 6.37 -105.14 -0.67 -2.72 16 15 C -0.08 -1.22 10.05 -39.65 -0.40 -1.62 16 16 C -0.16 -2.25 9.97 -39.94 -0.40 -2.65 16 17 C -0.11 -1.73 10.01 -39.54 -0.40 -2.12 16 18 C -0.12 -2.10 10.00 -39.43 -0.39 -2.50 16 19 C 0.10 1.96 6.81 -83.99 -0.57 1.39 16 20 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 21 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 24 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 25 H 0.16 2.26 8.06 -52.49 -0.42 1.84 16 26 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 28 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 265.24 15.07 4.00 4.00 Total: -1.00 -30.51 265.24 -8.39 -38.90 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -3.77 Total: 0.42 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -4.02 Total: -24.30 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.42 Total: -35.07 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.51 -8.39 -38.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036459161.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.774 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds