Wall clock time and date at job start Mon Mar 30 2020 02:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46684 * 179.97438 * 10 9 7 12 12 C 1.36834 * 125.06389 * 264.69754 * 11 10 9 13 13 C 1.34242 * 109.92869 * 179.81895 * 12 11 10 14 14 C 1.46490 * 106.99471 * 0.43458 * 13 12 11 15 15 C 1.39630 * 134.02989 * 179.76581 * 14 13 12 16 16 C 1.36622 * 119.76700 * 179.97438 * 15 14 13 17 17 C 1.38834 * 120.52653 * 0.02562 * 16 15 14 18 18 C 1.37748 * 120.66738 * 359.97426 * 17 16 15 19 19 C 1.37691 * 125.06104 * 85.00616 * 11 10 9 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 22 22 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 23 23 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 24 24 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 25 25 H 1.07997 * 125.03249 * 359.97438 * 12 11 10 26 26 H 1.07998 * 126.50160 * 180.15005 * 13 12 11 27 27 H 1.08003 * 120.11303 * 0.02562 * 15 14 13 28 28 H 1.08001 * 119.73581 * 180.02562 * 16 15 14 29 29 H 1.08001 * 119.66446 * 180.02562 * 17 16 15 30 30 H 1.07997 * 120.10971 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 7 1.5127 -4.9308 -0.0033 12 6 1.2097 -5.6640 1.1116 13 6 0.5301 -6.7678 0.7625 14 6 0.3954 -6.7444 -0.6960 15 6 -0.1935 -7.5990 -1.6300 16 6 -0.1481 -7.2858 -2.9591 17 6 0.4795 -6.1244 -3.3889 18 6 1.0668 -5.2672 -2.4846 19 6 1.0319 -5.5660 -1.1263 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6247 -2.5562 -0.8920 23 1 2.8720 -3.6035 -0.8927 24 1 2.8719 -3.6051 0.8873 25 1 1.4755 -5.3933 2.1228 26 1 0.1578 -7.5309 1.4299 27 1 -0.6838 -8.5040 -1.3029 28 1 -0.6042 -7.9469 -3.6811 29 1 0.5067 -5.8902 -4.4429 30 1 1.5529 -4.3664 -2.8289 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036459161.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:32 Heat of formation + Delta-G solvation = 30.971070 kcal Electronic energy + Delta-G solvation = -13445.411804 eV Core-core repulsion = 11204.887569 eV Total energy + Delta-G solvation = -2240.524235 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.11361 -37.99052 -35.83820 -33.95263 -31.86151 -30.07115 -29.53171 -26.63276 -23.83647 -23.14773 -22.25003 -20.93262 -18.78732 -17.61288 -17.23656 -16.65982 -16.23162 -15.57512 -15.33497 -14.80797 -14.41153 -14.29627 -13.84363 -13.49990 -13.37951 -12.90240 -12.75441 -12.46157 -12.33098 -12.05922 -11.69216 -11.65473 -11.42226 -10.66339 -10.49677 -9.03641 -8.49174 -8.27088 -6.42758 0.28381 0.79583 1.38756 1.40221 1.51474 1.87947 2.08302 2.38273 3.05788 3.06605 3.83438 3.94457 4.05941 4.21572 4.33649 4.44091 4.61016 4.66243 4.68490 4.84583 4.99813 5.10160 5.22829 5.32691 5.38007 5.62696 5.67576 5.74181 5.95068 6.02579 6.05371 6.43400 6.50680 6.74101 7.28343 8.83888 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.043644 B = 0.006913 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.400263 B = 4049.195080 C = 4381.064871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.024 3.976 10 C 0.125 3.875 11 N -0.487 5.487 12 C 0.042 3.958 13 C -0.221 4.221 14 C -0.138 4.138 15 C -0.081 4.081 16 C -0.153 4.153 17 C -0.107 4.107 18 C -0.151 4.151 19 C 0.066 3.934 20 H 0.265 0.735 21 H -0.008 1.008 22 H -0.015 1.015 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.187 0.813 26 H 0.171 0.829 27 H 0.146 0.854 28 H 0.153 0.847 29 H 0.146 0.854 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.276 -12.801 -2.080 13.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.584 4.584 8 H 0.090 0.910 9 C -0.014 4.014 10 C 0.004 3.996 11 N -0.168 5.168 12 C -0.084 4.084 13 C -0.246 4.246 14 C -0.143 4.143 15 C -0.099 4.099 16 C -0.171 4.171 17 C -0.126 4.126 18 C -0.171 4.171 19 C -0.041 4.041 20 H 0.074 0.926 21 H 0.010 0.990 22 H 0.003 0.997 23 H 0.095 0.905 24 H 0.115 0.885 25 H 0.204 0.796 26 H 0.189 0.811 27 H 0.163 0.837 28 H 0.170 0.830 29 H 0.163 0.837 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.326 -12.383 -2.034 12.762 hybrid contribution 0.114 1.319 0.081 1.326 sum 2.440 -11.064 -1.953 11.497 Atomic orbital electron populations 1.70127 1.08131 1.28088 1.50847 1.26036 0.95712 1.03707 0.94209 0.85339 0.78695 0.77794 0.78570 1.19768 1.20837 1.18139 1.21495 0.93861 0.91325 1.51749 0.91003 1.19219 0.94312 0.92837 0.94990 1.21879 0.94209 0.80134 1.03409 1.44524 1.47508 1.19574 1.05189 1.22385 1.01019 0.92830 0.92168 1.21938 1.08632 1.01285 0.92712 1.19689 1.03660 0.95992 0.94926 1.20592 0.98192 0.98872 0.92259 1.20962 1.02157 0.98062 0.95962 1.21111 0.97543 0.94357 0.99551 1.20321 1.05195 1.01432 0.90166 1.18758 1.01122 0.94909 0.89286 0.92603 0.98955 0.99697 0.90540 0.88460 0.79566 0.81118 0.83672 0.82966 0.83674 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.55 -30.30 9.11 25.60 0.23 -30.06 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 9 C 0.02 1.29 5.30 29.85 0.16 1.45 16 10 C 0.12 5.19 5.94 86.38 0.51 5.70 16 11 N -0.49 -19.24 2.78 -515.91 -1.43 -20.68 16 12 C 0.04 1.40 11.27 83.00 0.94 2.34 16 13 C -0.22 -6.91 11.08 23.51 0.26 -6.65 16 14 C -0.14 -4.79 6.37 -20.20 -0.13 -4.92 16 15 C -0.08 -2.29 10.05 22.23 0.22 -2.07 16 16 C -0.15 -3.99 9.97 22.03 0.22 -3.77 16 17 C -0.11 -3.15 10.01 22.30 0.22 -2.93 16 18 C -0.15 -5.56 10.00 22.37 0.22 -5.33 16 19 C 0.07 2.60 6.81 39.03 0.27 2.87 16 20 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 21 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 22 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 23 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 24 H 0.10 3.62 8.11 -2.39 -0.02 3.60 16 25 H 0.19 5.02 8.06 -2.91 -0.02 5.00 16 26 H 0.17 4.07 8.06 -2.91 -0.02 4.04 16 27 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 28 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 29 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.11 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -67.53 265.24 5.58 -61.96 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.11 Total: 12.85 kcal Atomic # 6 Polarization: -46.40 SS G_CDS: 3.59 Total: -42.81 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -1.15 Total: -77.34 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -67.53 5.58 -61.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036459161.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.927 kcal (2) G-P(sol) polarization free energy of solvation -67.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds