Wall clock time and date at job start Mon Mar 30 2020 02:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 119.99995 * 2 1 4 4 H 1.48506 * 109.46921 * 270.00406 * 3 2 1 5 5 H 1.48501 * 109.46996 * 29.99779 * 3 2 1 6 6 H 1.48498 * 109.47259 * 150.00802 * 3 2 1 7 7 C 1.37878 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99816 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00279 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47200 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.46948 * 179.97438 * 10 9 7 12 12 C 1.46833 * 110.99839 * 66.26364 * 11 10 9 13 13 C 1.52000 * 104.50522 * 134.27277 * 12 11 10 14 14 C 1.54485 * 108.54183 * 106.29834 * 13 12 11 15 15 S 1.82353 * 110.15218 * 321.25711 * 14 13 12 16 16 C 1.79635 * 106.27960 * 319.46485 * 15 14 13 17 17 C 1.39452 * 111.00273 * 293.95402 * 11 10 9 18 18 H 0.96994 * 120.00302 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47468 * 59.99362 * 9 7 2 20 20 H 1.09004 * 109.46778 * 299.99440 * 9 7 2 21 21 H 1.09002 * 109.47270 * 60.00030 * 10 9 7 22 22 H 1.08996 * 109.46783 * 300.00150 * 10 9 7 23 23 H 1.08996 * 110.42186 * 253.02011 * 12 11 10 24 24 H 1.09008 * 110.42363 * 15.53142 * 12 11 10 25 25 H 1.09000 * 109.63070 * 226.02025 * 13 12 11 26 26 H 1.09004 * 109.62468 * 346.59158 * 13 12 11 27 27 H 1.09001 * 109.35263 * 81.46381 * 14 13 12 28 28 H 1.09002 * 109.35734 * 201.04444 * 14 13 12 29 29 H 1.09003 * 109.51832 * 327.89745 * 16 15 14 30 30 H 1.09005 * 109.34905 * 208.08042 * 16 15 14 31 31 H 1.09002 * 109.36961 * 313.67052 * 17 11 10 32 32 H 1.09005 * 109.36998 * 73.42252 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.6998 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4906 -2.6364 -0.0022 12 6 6.0177 -2.0842 1.2520 13 6 7.1136 -3.0536 1.6640 14 6 8.4826 -2.3864 1.4048 15 16 8.4322 -1.4317 -0.1480 16 6 7.5020 -2.4255 -1.3202 17 6 5.9894 -2.1083 -1.1925 18 1 -0.4850 0.8400 0.0004 19 1 3.8752 -0.6803 0.8888 20 1 3.8744 -0.6800 -0.8912 21 1 3.6579 -3.1506 -0.8907 22 1 3.6585 -3.1501 0.8892 23 1 6.4323 -1.0900 1.0853 24 1 5.2358 -2.0494 2.0107 25 1 7.0155 -3.2882 2.7240 26 1 7.0344 -3.9674 1.0751 27 1 8.7213 -1.7182 2.2322 28 1 9.2513 -3.1558 1.3312 29 1 7.6691 -3.4828 -1.1145 30 1 7.8360 -2.1970 -2.3324 31 1 5.4554 -2.5480 -2.0349 32 1 5.8450 -1.0279 -1.1972 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042443866.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:47 Heat of formation + Delta-G solvation = 1.971764 kcal Electronic energy + Delta-G solvation = -12999.373341 eV Core-core repulsion = 10893.035553 eV Total energy + Delta-G solvation = -2106.337788 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.64221 -33.80257 -32.81123 -31.22999 -28.92641 -26.22310 -24.19985 -22.21513 -21.49735 -19.45509 -17.00671 -16.40058 -15.39979 -15.11899 -14.76581 -14.29555 -13.89391 -13.59842 -13.20291 -12.77490 -12.35552 -12.12202 -11.59114 -11.55116 -11.14076 -11.02135 -10.83523 -10.55030 -10.37292 -9.96061 -9.77305 -9.57379 -9.24242 -8.56429 -7.63438 -7.44361 -6.07282 -4.05743 1.76204 2.72964 3.28878 3.36660 3.41183 4.37313 4.43082 4.86905 4.95004 5.09497 5.26269 5.30770 5.34240 5.45669 5.70765 5.74023 5.92134 5.95344 6.09884 6.16065 6.27604 6.35497 6.53136 6.70342 7.17751 7.26662 7.50262 7.83372 7.94968 8.50030 8.97250 9.55504 11.05974 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.043392 B = 0.008160 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.123526 B = 3430.451778 C = 3590.990581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.043 4.043 10 C 0.075 3.925 11 N -0.574 5.574 12 C 0.052 3.948 13 C -0.121 4.121 14 C -0.080 4.080 15 S -0.275 6.275 16 C -0.085 4.085 17 C 0.084 3.916 18 H 0.263 0.737 19 H 0.016 0.984 20 H 0.011 0.989 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.153 -4.892 0.925 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.081 4.081 10 C -0.051 4.051 11 N -0.297 5.297 12 C -0.076 4.076 13 C -0.161 4.161 14 C -0.228 4.228 15 S -0.048 6.048 16 C -0.234 4.234 17 C -0.048 4.048 18 H 0.073 0.927 19 H 0.034 0.966 20 H 0.029 0.971 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.627 -4.246 0.724 17.176 hybrid contribution -0.448 0.551 0.161 0.728 sum 16.180 -3.695 0.885 16.620 Atomic orbital electron populations 1.69909 1.06285 1.26908 1.51037 1.25022 0.94700 0.99139 0.94480 0.86794 0.80367 0.83695 0.78545 1.20324 1.21342 1.19074 1.21046 0.89290 0.94494 1.50978 0.90950 1.20137 0.97764 0.93910 0.96327 1.22166 0.82898 0.98336 1.01746 1.58392 1.09495 1.60164 1.01612 1.22282 0.96800 0.97186 0.91366 1.22217 0.92236 0.99836 1.01773 1.23981 1.01009 1.01659 0.96196 1.86190 1.71727 1.35857 1.11057 1.23762 0.98067 1.02041 0.99510 1.20972 0.92253 0.98495 0.93077 0.92718 0.96609 0.97080 0.91657 0.91466 0.91008 0.90545 0.91115 0.90017 0.88452 0.90482 0.89324 0.88032 0.90145 0.94476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 7 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C -0.04 -1.01 3.59 -27.88 -0.10 -1.11 16 10 C 0.07 1.47 4.96 -3.82 -0.02 1.45 16 11 N -0.57 -9.49 3.47 -239.73 -0.83 -10.32 16 12 C 0.05 0.80 4.63 -4.37 -0.02 0.78 16 13 C -0.12 -1.49 5.76 -26.46 -0.15 -1.64 16 14 C -0.08 -0.91 6.65 37.94 0.25 -0.66 16 15 S -0.28 -3.77 20.05 -107.50 -2.16 -5.92 16 16 C -0.08 -1.10 6.01 38.26 0.23 -0.87 16 17 C 0.08 1.32 4.61 -6.56 -0.03 1.29 16 18 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 19 H 0.02 0.38 6.25 -51.93 -0.32 0.06 16 20 H 0.01 0.26 6.28 -51.93 -0.33 -0.06 16 21 H 0.06 1.28 7.88 -51.93 -0.41 0.87 16 22 H 0.07 1.33 7.97 -51.93 -0.41 0.91 16 23 H 0.07 1.20 6.04 -51.37 -0.31 0.89 16 24 H 0.08 1.26 7.25 -51.92 -0.38 0.88 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.08 1.05 7.42 -51.93 -0.39 0.66 16 27 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.09 1.09 7.86 -51.83 -0.41 0.68 16 30 H 0.10 1.16 8.14 -51.79 -0.42 0.74 16 31 H 0.08 1.22 7.77 -51.93 -0.40 0.82 16 32 H 0.04 0.67 7.00 -51.93 -0.36 0.30 16 LS Contribution 257.63 15.07 3.88 3.88 Total: -1.00 -30.07 257.63 -8.27 -38.33 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -5.00 Total: -2.26 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -0.27 Total: -13.98 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.06 Total: -37.49 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -2.16 Total: -5.92 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.07 -8.27 -38.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042443866.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.305 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds