Wall clock time and date at job start Mon Mar 30 2020 02:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 119.99995 * 2 1 4 4 H 1.48506 * 109.46921 * 270.00406 * 3 2 1 5 5 H 1.48501 * 109.46996 * 29.99779 * 3 2 1 6 6 H 1.48498 * 109.47259 * 150.00802 * 3 2 1 7 7 C 1.37878 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99816 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00279 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47200 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.46948 * 179.97438 * 10 9 7 12 12 C 1.46833 * 110.99839 * 66.26364 * 11 10 9 13 13 C 1.52000 * 104.50522 * 134.27277 * 12 11 10 14 14 C 1.54485 * 108.54183 * 106.29834 * 13 12 11 15 15 S 1.82353 * 110.15218 * 321.25711 * 14 13 12 16 16 C 1.79635 * 106.27960 * 319.46485 * 15 14 13 17 17 C 1.39452 * 111.00273 * 293.95402 * 11 10 9 18 18 H 0.96994 * 120.00302 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47468 * 59.99362 * 9 7 2 20 20 H 1.09004 * 109.46778 * 299.99440 * 9 7 2 21 21 H 1.09002 * 109.47270 * 60.00030 * 10 9 7 22 22 H 1.08996 * 109.46783 * 300.00150 * 10 9 7 23 23 H 1.08996 * 110.42186 * 253.02011 * 12 11 10 24 24 H 1.09008 * 110.42363 * 15.53142 * 12 11 10 25 25 H 1.09000 * 109.63070 * 226.02025 * 13 12 11 26 26 H 1.09004 * 109.62468 * 346.59158 * 13 12 11 27 27 H 1.09001 * 109.35263 * 81.46381 * 14 13 12 28 28 H 1.09002 * 109.35734 * 201.04444 * 14 13 12 29 29 H 1.09003 * 109.51832 * 327.89745 * 16 15 14 30 30 H 1.09005 * 109.34905 * 208.08042 * 16 15 14 31 31 H 1.09002 * 109.36961 * 313.67052 * 17 11 10 32 32 H 1.09005 * 109.36998 * 73.42252 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.6998 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4906 -2.6364 -0.0022 12 6 6.0177 -2.0842 1.2520 13 6 7.1136 -3.0536 1.6640 14 6 8.4826 -2.3864 1.4048 15 16 8.4322 -1.4317 -0.1480 16 6 7.5020 -2.4255 -1.3202 17 6 5.9894 -2.1083 -1.1925 18 1 -0.4850 0.8400 0.0004 19 1 3.8752 -0.6803 0.8888 20 1 3.8744 -0.6800 -0.8912 21 1 3.6579 -3.1506 -0.8907 22 1 3.6585 -3.1501 0.8892 23 1 6.4323 -1.0900 1.0853 24 1 5.2358 -2.0494 2.0107 25 1 7.0155 -3.2882 2.7240 26 1 7.0344 -3.9674 1.0751 27 1 8.7213 -1.7182 2.2322 28 1 9.2513 -3.1558 1.3312 29 1 7.6691 -3.4828 -1.1145 30 1 7.8360 -2.1970 -2.3324 31 1 5.4554 -2.5480 -2.0349 32 1 5.8450 -1.0279 -1.1972 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042443866.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:47 Heat of formation + Delta-G solvation = -16.815426 kcal Electronic energy + Delta-G solvation = -13000.188015 eV Core-core repulsion = 10893.035553 eV Total energy + Delta-G solvation = -2107.152461 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.99690 -35.46885 -34.36873 -32.83638 -30.49495 -27.51019 -25.83804 -23.58976 -22.91416 -20.92347 -19.10665 -17.57755 -16.73022 -16.49960 -16.26971 -15.84355 -15.09533 -14.96663 -14.74695 -14.52766 -13.73899 -13.60690 -13.15730 -12.86927 -12.73037 -12.37743 -12.12337 -11.99840 -11.91919 -11.70887 -11.57369 -11.38595 -10.81295 -10.60034 -9.04397 -8.52895 -8.33978 -6.37737 0.78650 1.29502 1.31278 1.42833 1.75288 2.30257 3.01005 3.06254 3.82010 3.88424 4.10234 4.24164 4.29175 4.39804 4.47335 4.57513 4.69533 4.71809 4.82274 4.85633 4.87768 5.02511 5.11971 5.33373 5.37952 5.41002 5.55353 6.09297 6.31426 6.59398 6.71450 7.27199 8.82447 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.043392 B = 0.008160 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.123526 B = 3430.451778 C = 3590.990581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.529 4.529 8 H 0.038 0.962 9 C -0.032 4.032 10 C 0.085 3.915 11 N -0.561 5.561 12 C 0.047 3.953 13 C -0.112 4.112 14 C -0.069 4.069 15 S -0.314 6.314 16 C -0.069 4.069 17 C 0.079 3.921 18 H 0.267 0.733 19 H 0.013 0.987 20 H 0.010 0.990 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.496 -4.898 1.196 19.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.179 1.179 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.071 4.071 10 C -0.042 4.042 11 N -0.284 5.284 12 C -0.081 4.081 13 C -0.151 4.151 14 C -0.217 4.217 15 S -0.087 6.087 16 C -0.218 4.218 17 C -0.053 4.053 18 H 0.076 0.924 19 H 0.031 0.969 20 H 0.029 0.971 21 H 0.081 0.919 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.127 0.873 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.136 0.864 31 H 0.102 0.898 32 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 18.997 -4.264 0.996 19.495 hybrid contribution -1.222 0.493 0.092 1.321 sum 17.775 -3.771 1.088 18.203 Atomic orbital electron populations 1.70047 1.08090 1.28125 1.52540 1.25930 0.95527 1.03157 0.94193 0.85725 0.79302 0.78937 0.79074 1.19385 1.20639 1.17883 1.21393 0.91807 0.93254 1.50297 0.94396 1.20026 0.94528 0.96703 0.95876 1.21934 0.85192 0.95522 1.01523 1.58517 1.07123 1.60210 1.02518 1.22371 0.97481 0.97744 0.90472 1.22088 0.91399 0.98685 1.02914 1.24018 1.00871 1.01986 0.94799 1.86370 1.71699 1.37555 1.13074 1.23644 0.95438 1.02428 1.00288 1.21048 0.94540 0.96958 0.92741 0.92435 0.96901 0.97147 0.91860 0.91774 0.92052 0.91761 0.89107 0.90095 0.87330 0.88345 0.88161 0.86362 0.89823 0.96865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 2 C 0.01 0.55 5.47 84.66 0.46 1.01 16 3 Si 0.95 45.54 27.47 68.60 1.88 47.42 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 6 H -0.25 -11.70 6.54 99.48 0.65 -11.05 16 7 C -0.53 -30.66 9.66 25.60 0.25 -30.42 16 8 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 9 C -0.03 -1.53 3.59 29.85 0.11 -1.42 16 10 C 0.09 3.33 4.96 86.30 0.43 3.75 16 11 N -0.56 -17.75 3.47 -912.37 -3.16 -20.91 16 12 C 0.05 1.38 4.63 85.99 0.40 1.78 16 13 C -0.11 -2.40 5.76 30.77 0.18 -2.23 16 14 C -0.07 -1.33 6.65 72.49 0.48 -0.85 16 15 S -0.31 -7.86 20.05 -56.49 -1.13 -8.99 16 16 C -0.07 -1.62 6.01 72.69 0.44 -1.18 16 17 C 0.08 2.36 4.61 88.35 0.41 2.77 16 18 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 19 H 0.01 0.61 6.25 -2.39 -0.01 0.59 16 20 H 0.01 0.49 6.28 -2.39 -0.01 0.47 16 21 H 0.06 2.48 7.88 -2.39 -0.02 2.46 16 22 H 0.06 2.52 7.97 -2.39 -0.02 2.50 16 23 H 0.06 1.96 6.04 -2.75 -0.02 1.94 16 24 H 0.06 2.04 7.25 -2.38 -0.02 2.02 16 25 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.08 1.80 7.42 -2.39 -0.02 1.79 16 27 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.10 2.14 7.86 -2.45 -0.02 2.12 16 30 H 0.12 2.38 8.14 -2.47 -0.02 2.36 16 31 H 0.08 2.42 7.77 -2.39 -0.02 2.41 16 32 H 0.01 0.46 7.00 -2.38 -0.02 0.45 16 Total: -1.00 -64.69 257.63 2.05 -62.64 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.02 Total: 6.12 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 3.15 Total: -26.79 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -2.86 Total: -80.40 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.42 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.13 Total: -8.99 kcal Total: -64.69 2.05 -62.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042443866.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.823 kcal (2) G-P(sol) polarization free energy of solvation -64.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds