Wall clock time and date at job start Mon Mar 30 2020 02:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37631 * 120.13109 * 2 1 4 4 C 1.38619 * 120.24823 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.74596 * 180.02562 * 4 3 2 6 6 C 1.47201 * 109.47076 * 265.00039 * 5 4 3 7 7 N 5.26893 * 130.72074 * 322.15543 * 2 1 3 8 8 C 1.38653 * 120.50038 * 0.28047 * 4 3 2 9 9 C 1.50703 * 119.87226 * 179.72426 * 8 4 3 10 10 C 1.37591 * 120.24769 * 359.44144 * 8 4 3 11 11 C 1.40702 * 120.12512 * 180.02562 * 2 1 3 12 12 C 1.41396 * 120.24485 * 359.97438 * 11 2 1 13 13 H 1.08001 * 119.99859 * 25.39566 * 12 11 2 14 14 C 1.39945 * 120.00223 * 205.38882 * 12 11 2 15 15 N 1.30823 * 119.99903 * 15.27096 * 14 12 11 16 16 Si 1.86803 * 119.99895 * 195.26693 * 14 12 11 17 17 H 1.48504 * 109.46704 * 90.00755 * 16 14 12 18 18 H 1.48500 * 109.46865 * 209.99969 * 16 14 12 19 19 H 1.48493 * 109.47531 * 330.00518 * 16 14 12 20 20 H 1.09002 * 109.47134 * 89.99428 * 1 2 3 21 21 H 1.08998 * 109.46965 * 210.00054 * 1 2 3 22 22 H 1.09000 * 109.46308 * 329.99529 * 1 2 3 23 23 H 1.08000 * 119.87501 * 0.04761 * 3 2 1 24 24 H 1.09003 * 109.47390 * 25.00401 * 5 4 3 25 25 H 1.09001 * 109.46976 * 145.00585 * 5 4 3 26 26 H 1.09002 * 109.46947 * 90.00009 * 9 8 4 27 27 H 1.09001 * 109.47222 * 209.99228 * 9 8 4 28 28 H 1.08997 * 109.47270 * 329.99638 * 9 8 4 29 29 H 1.08011 * 120.12668 * 180.27852 * 10 8 4 30 30 H 0.96996 * 120.00288 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1980 1.1903 0.0000 4 6 3.5841 1.1932 -0.0005 5 6 4.3292 2.5031 0.0001 6 6 4.6763 2.8708 -1.3824 7 7 4.9444 3.1534 -2.4500 8 6 4.2903 0.0000 -0.0069 9 6 5.7972 0.0196 -0.0137 10 6 3.6205 -1.2019 -0.0012 11 6 2.2132 -1.2170 -0.0005 12 6 1.5142 -2.4460 -0.0005 13 1 0.5126 -2.4976 -0.4013 14 6 2.1201 -3.5957 0.5186 15 7 3.1894 -3.4913 1.2650 16 14 1.4020 -5.2794 0.1458 17 1 2.0174 -5.8165 -1.0944 18 1 1.6843 -6.1994 1.2769 19 1 -0.0663 -5.1610 -0.0414 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3632 0.8900 0.5139 23 1 1.6581 2.1257 0.0008 24 1 3.6994 3.2792 0.4352 25 1 5.2408 2.4023 0.5890 26 1 6.1651 0.0216 1.0123 27 1 6.1698 -0.8643 -0.5315 28 1 6.1466 0.9155 -0.5268 29 1 4.1726 -2.1302 -0.0017 30 1 3.6093 -4.2881 1.6251 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368105.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:01 Heat of formation + Delta-G solvation = 19.792699 kcal Electronic energy + Delta-G solvation = -13592.366420 eV Core-core repulsion = 11351.357455 eV Total energy + Delta-G solvation = -2241.008965 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.36901 -36.08869 -34.15226 -32.75253 -30.96454 -28.25479 -27.91555 -24.91766 -23.33592 -20.92958 -19.17498 -17.09445 -16.67116 -15.41957 -14.70800 -14.38030 -13.75073 -13.25492 -12.97705 -12.72580 -12.40734 -12.27680 -12.04216 -11.83825 -11.57960 -11.41572 -11.23722 -11.08227 -10.84423 -10.72057 -10.48798 -10.10597 -9.55839 -9.37367 -9.20604 -7.39591 -7.17938 -6.79595 -4.42540 2.60367 2.93860 3.03489 3.06748 3.07586 3.27070 3.38266 3.87846 4.42583 4.80969 5.51720 5.70586 5.80021 6.02746 6.04644 6.11224 6.27542 6.36428 6.39231 6.53389 6.65279 6.70279 6.92998 7.03908 7.27335 7.35507 7.58693 7.78650 7.96692 8.02623 8.09258 8.24636 8.56117 8.83169 8.90721 10.11691 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.037570 B = 0.008778 C = 0.007674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.099207 B = 3188.934141 C = 3647.666622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.201 4.201 3 C -0.072 4.072 4 C -0.222 4.222 5 C 0.034 3.966 6 C 0.224 3.776 7 N -0.471 5.471 8 C -0.063 4.063 9 C -0.106 4.106 10 C -0.159 4.159 11 C 0.119 3.881 12 C -0.454 4.454 13 H 0.081 0.919 14 C 0.075 3.925 15 N -0.790 5.790 16 Si 0.908 3.092 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.262 1.262 20 H 0.040 0.960 21 H 0.061 0.939 22 H 0.038 0.962 23 H 0.091 0.909 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.122 0.878 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.374 2.935 1.980 3.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.202 4.202 3 C -0.091 4.091 4 C -0.224 4.224 5 C -0.005 4.005 6 C -0.092 4.092 7 N -0.149 5.149 8 C -0.064 4.064 9 C -0.163 4.163 10 C -0.179 4.179 11 C 0.116 3.884 12 C -0.483 4.483 13 H 0.099 0.901 14 C -0.143 4.143 15 N -0.415 5.415 16 Si 0.732 3.268 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.186 1.186 20 H 0.059 0.941 21 H 0.080 0.920 22 H 0.057 0.943 23 H 0.109 0.891 24 H 0.116 0.884 25 H 0.118 0.882 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.139 0.861 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.941 3.216 0.531 3.393 hybrid contribution -0.378 -1.000 0.339 1.122 sum 0.563 2.217 0.870 2.447 Atomic orbital electron populations 1.20396 0.93532 1.00588 0.99629 1.19716 0.94356 0.92977 1.13161 1.20238 0.92705 0.96090 1.00035 1.18422 0.92901 0.90979 1.20129 1.17980 1.01355 0.97375 0.83839 1.29769 0.92127 0.91671 0.95670 1.81111 1.10384 1.10857 1.12513 1.19308 0.93660 0.93250 1.00157 1.20713 0.93936 1.00795 1.00845 1.21213 0.94415 0.95920 1.06313 1.17513 0.91801 0.91684 0.87393 1.19652 1.01618 0.92323 1.34744 0.90105 1.25937 0.94304 1.01427 0.92676 1.69806 1.17399 1.31660 1.22626 0.86310 0.80521 0.80984 0.78948 1.19295 1.20265 1.18563 0.94115 0.92049 0.94314 0.89119 0.88357 0.88196 0.92235 0.92755 0.93402 0.86060 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 9.41 36.01 0.34 -1.35 16 2 C -0.20 -4.61 5.94 -103.91 -0.62 -5.22 16 3 C -0.07 -1.50 9.30 -39.66 -0.37 -1.87 16 4 C -0.22 -4.39 5.11 -104.33 -0.53 -4.92 16 5 C 0.03 0.52 5.17 -30.67 -0.16 0.36 16 6 C 0.22 3.88 14.57 -20.74 -0.30 3.58 16 7 N -0.47 -9.16 18.54 42.17 0.78 -8.38 16 8 C -0.06 -1.36 5.87 -104.70 -0.61 -1.98 16 9 C -0.11 -1.89 9.20 36.01 0.33 -1.56 16 10 C -0.16 -3.93 8.33 -38.88 -0.32 -4.25 16 11 C 0.12 3.00 5.57 -106.82 -0.60 2.41 16 12 C -0.45 -11.46 8.15 -37.74 -0.31 -11.76 16 13 H 0.08 1.97 6.85 -52.49 -0.36 1.61 16 14 C 0.07 1.80 5.19 -17.34 -0.09 1.71 16 15 N -0.79 -19.52 10.87 55.55 0.60 -18.91 16 16 Si 0.91 18.08 29.59 -169.99 -5.03 13.05 16 17 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 20 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.06 1.25 6.77 -51.93 -0.35 0.90 16 22 H 0.04 0.67 8.09 -51.93 -0.42 0.25 16 23 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 24 H 0.10 1.22 8.05 -51.93 -0.42 0.80 16 25 H 0.10 1.29 6.98 -51.93 -0.36 0.93 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 28 H 0.05 0.78 6.10 -51.93 -0.32 0.46 16 29 H 0.12 3.12 6.13 -52.48 -0.32 2.80 16 30 H 0.28 6.33 8.30 -40.82 -0.34 6.00 16 LS Contribution 261.80 15.07 3.95 3.95 Total: -1.00 -27.16 261.80 -6.31 -33.47 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -3.37 Total: 1.69 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -3.24 Total: -24.87 kcal Atomic # 7 Polarization: -28.68 SS G_CDS: 1.39 Total: -27.30 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.16 -6.31 -33.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368105.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.263 kcal (2) G-P(sol) polarization free energy of solvation -27.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds