Wall clock time and date at job start Mon Mar 30 2020 02:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37631 * 120.13109 * 2 1 4 4 C 1.38619 * 120.24823 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.74596 * 180.02562 * 4 3 2 6 6 C 1.47201 * 109.47076 * 265.00039 * 5 4 3 7 7 N 5.26893 * 130.72074 * 322.15543 * 2 1 3 8 8 C 1.38653 * 120.50038 * 0.28047 * 4 3 2 9 9 C 1.50703 * 119.87226 * 179.72426 * 8 4 3 10 10 C 1.37591 * 120.24769 * 359.44144 * 8 4 3 11 11 C 1.40702 * 120.12512 * 180.02562 * 2 1 3 12 12 C 1.41396 * 120.24485 * 359.97438 * 11 2 1 13 13 H 1.08001 * 119.99859 * 25.39566 * 12 11 2 14 14 C 1.39945 * 120.00223 * 205.38882 * 12 11 2 15 15 N 1.30823 * 119.99903 * 15.27096 * 14 12 11 16 16 Si 1.86803 * 119.99895 * 195.26693 * 14 12 11 17 17 H 1.48504 * 109.46704 * 90.00755 * 16 14 12 18 18 H 1.48500 * 109.46865 * 209.99969 * 16 14 12 19 19 H 1.48493 * 109.47531 * 330.00518 * 16 14 12 20 20 H 1.09002 * 109.47134 * 89.99428 * 1 2 3 21 21 H 1.08998 * 109.46965 * 210.00054 * 1 2 3 22 22 H 1.09000 * 109.46308 * 329.99529 * 1 2 3 23 23 H 1.08000 * 119.87501 * 0.04761 * 3 2 1 24 24 H 1.09003 * 109.47390 * 25.00401 * 5 4 3 25 25 H 1.09001 * 109.46976 * 145.00585 * 5 4 3 26 26 H 1.09002 * 109.46947 * 90.00009 * 9 8 4 27 27 H 1.09001 * 109.47222 * 209.99228 * 9 8 4 28 28 H 1.08997 * 109.47270 * 329.99638 * 9 8 4 29 29 H 1.08011 * 120.12668 * 180.27852 * 10 8 4 30 30 H 0.96996 * 120.00288 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1980 1.1903 0.0000 4 6 3.5841 1.1932 -0.0005 5 6 4.3292 2.5031 0.0001 6 6 4.6763 2.8708 -1.3824 7 7 4.9444 3.1534 -2.4500 8 6 4.2903 0.0000 -0.0069 9 6 5.7972 0.0196 -0.0137 10 6 3.6205 -1.2019 -0.0012 11 6 2.2132 -1.2170 -0.0005 12 6 1.5142 -2.4460 -0.0005 13 1 0.5126 -2.4976 -0.4013 14 6 2.1201 -3.5957 0.5186 15 7 3.1894 -3.4913 1.2650 16 14 1.4020 -5.2794 0.1458 17 1 2.0174 -5.8165 -1.0944 18 1 1.6843 -6.1994 1.2769 19 1 -0.0663 -5.1610 -0.0414 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3632 0.8900 0.5139 23 1 1.6581 2.1257 0.0008 24 1 3.6994 3.2792 0.4352 25 1 5.2408 2.4023 0.5890 26 1 6.1651 0.0216 1.0123 27 1 6.1698 -0.8643 -0.5315 28 1 6.1466 0.9155 -0.5268 29 1 4.1726 -2.1302 -0.0017 30 1 3.6093 -4.2881 1.6251 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368105.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:01 Heat of formation + Delta-G solvation = 6.492242 kcal Electronic energy + Delta-G solvation = -13592.943171 eV Core-core repulsion = 11351.357455 eV Total energy + Delta-G solvation = -2241.585716 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.00903 -37.55622 -35.82971 -34.40940 -32.54052 -29.87343 -29.47188 -26.58686 -24.95424 -22.63720 -20.84219 -18.79516 -18.09592 -17.09398 -16.25488 -15.90882 -15.37899 -14.75767 -14.55021 -14.33644 -13.94863 -13.75550 -13.49191 -13.35868 -13.21852 -13.05561 -12.83122 -12.55136 -12.43319 -12.17648 -12.05396 -11.73870 -11.23536 -11.04140 -10.95331 -9.14832 -8.88487 -8.54483 -6.26952 0.93694 1.20396 1.38946 1.49435 1.50506 1.93703 1.97413 2.21847 2.72788 3.41162 3.80412 4.33030 4.39838 4.57054 4.64143 4.75410 4.81359 4.92031 4.96280 5.02678 5.08430 5.20372 5.23353 5.36772 5.52405 5.65364 5.86224 6.08000 6.24197 6.29047 6.49165 6.72803 6.80735 7.02644 7.14026 8.37709 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.037570 B = 0.008778 C = 0.007674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.099207 B = 3188.934141 C = 3647.666622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.221 4.221 3 C -0.080 4.080 4 C -0.210 4.210 5 C 0.039 3.961 6 C 0.243 3.757 7 N -0.512 5.512 8 C -0.074 4.074 9 C -0.101 4.101 10 C -0.191 4.191 11 C 0.082 3.918 12 C -0.490 4.490 13 H 0.076 0.924 14 C 0.035 3.965 15 N -0.823 5.823 16 Si 0.974 3.026 17 H -0.268 1.268 18 H -0.269 1.269 19 H -0.259 1.259 20 H 0.047 0.953 21 H 0.046 0.954 22 H 0.065 0.935 23 H 0.125 0.875 24 H 0.139 0.861 25 H 0.131 0.869 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 4.594 2.409 5.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.222 4.222 3 C -0.098 4.098 4 C -0.212 4.212 5 C 0.000 4.000 6 C -0.073 4.073 7 N -0.190 5.190 8 C -0.074 4.074 9 C -0.158 4.158 10 C -0.211 4.211 11 C 0.080 3.920 12 C -0.520 4.520 13 H 0.094 0.906 14 C -0.180 4.180 15 N -0.449 5.449 16 Si 0.796 3.204 17 H -0.193 1.193 18 H -0.193 1.193 19 H -0.182 1.182 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.084 0.916 23 H 0.143 0.857 24 H 0.157 0.843 25 H 0.149 0.851 26 H 0.096 0.904 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.075 4.890 0.960 5.098 hybrid contribution -0.377 -1.348 0.208 1.415 sum 0.698 3.542 1.168 3.794 Atomic orbital electron populations 1.20369 0.91908 1.01185 1.00198 1.20173 0.95997 0.93153 1.12926 1.20688 0.93484 0.96653 0.98953 1.18893 0.93045 0.92535 1.16755 1.18205 1.02984 0.95705 0.83101 1.30032 0.90964 0.90620 0.95641 1.81152 1.11919 1.12190 1.13749 1.19751 0.95749 0.92934 0.98961 1.20715 0.91423 1.01438 1.02215 1.21204 0.94590 0.96482 1.08828 1.17899 0.92534 0.92885 0.88688 1.19829 1.01922 0.93613 1.36629 0.90608 1.26667 0.94639 1.04535 0.92136 1.69868 1.18700 1.32643 1.23719 0.85317 0.79712 0.76671 0.78736 1.19275 1.19332 1.18239 0.93469 0.93490 0.91605 0.85701 0.84299 0.85085 0.90365 0.93540 0.91353 0.88404 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.12 9.41 71.24 0.67 -2.45 16 2 C -0.22 -10.05 5.94 -19.40 -0.12 -10.17 16 3 C -0.08 -3.10 9.30 22.22 0.21 -2.89 16 4 C -0.21 -7.69 5.11 -19.67 -0.10 -7.79 16 5 C 0.04 0.99 5.17 28.04 0.14 1.14 16 6 C 0.24 7.52 14.57 89.44 1.30 8.83 16 7 N -0.51 -18.65 18.54 20.01 0.37 -18.28 16 8 C -0.07 -3.09 5.87 -19.92 -0.12 -3.21 16 9 C -0.10 -3.42 9.20 71.24 0.66 -2.76 16 10 C -0.19 -9.70 8.33 22.73 0.19 -9.51 16 11 C 0.08 4.27 5.57 -21.29 -0.12 4.16 16 12 C -0.49 -25.77 8.15 23.46 0.19 -25.58 16 13 H 0.08 3.87 6.85 -2.91 -0.02 3.85 16 14 C 0.03 1.73 5.19 85.26 0.44 2.17 16 15 N -0.82 -42.30 10.87 21.83 0.24 -42.06 16 16 Si 0.97 38.14 29.59 68.60 2.03 40.17 16 17 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 18 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 19 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 20 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.05 1.93 6.77 -2.39 -0.02 1.92 16 22 H 0.07 2.15 8.09 -2.39 -0.02 2.13 16 23 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 24 H 0.14 2.53 8.05 -2.39 -0.02 2.51 16 25 H 0.13 2.63 6.98 -2.39 -0.02 2.62 16 26 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.05 1.62 8.08 -2.39 -0.02 1.60 16 28 H 0.07 2.00 6.10 -2.39 -0.01 1.98 16 29 H 0.10 5.31 6.13 -2.91 -0.02 5.29 16 30 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 Total: -1.00 -61.02 261.80 7.14 -53.88 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 1.15 Total: 14.35 kcal Atomic # 6 Polarization: -51.41 SS G_CDS: 3.35 Total: -48.06 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: 0.61 Total: -60.34 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -61.02 7.14 -53.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368105.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.375 kcal (2) G-P(sol) polarization free energy of solvation -61.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds