Wall clock time and date at job start Mon Mar 30 2020 02:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47050 * 102.18916 * 3 2 1 5 5 C 1.53007 * 109.47197 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47108 * 179.97438 * 5 4 3 7 7 C 1.38637 * 119.75119 * 270.25066 * 6 5 4 8 8 C 1.37613 * 120.24527 * 180.26027 * 7 6 5 9 9 C 1.40709 * 119.74954 * 359.47065 * 8 7 6 10 10 C 1.41391 * 120.24881 * 180.29949 * 9 8 7 11 11 H 1.08004 * 120.00321 * 24.37553 * 10 9 8 12 12 C 1.39949 * 120.00394 * 204.37955 * 10 9 8 13 13 N 1.30826 * 119.99793 * 17.83971 * 12 10 9 14 14 Si 1.86793 * 120.00334 * 197.84214 * 12 10 9 15 15 H 1.48499 * 109.47118 * 89.99811 * 14 12 10 16 16 H 1.48498 * 109.47443 * 210.00158 * 14 12 10 17 17 H 1.48505 * 109.47294 * 329.99982 * 14 12 10 18 18 C 1.40717 * 119.50871 * 0.27696 * 9 8 7 19 19 C 1.37615 * 119.74803 * 359.97438 * 18 9 8 20 20 H 1.08998 * 109.47760 * 342.18753 * 3 2 1 21 21 H 1.09000 * 109.46990 * 222.18333 * 3 2 1 22 22 H 1.09001 * 109.47473 * 59.99914 * 4 3 2 23 23 H 1.09000 * 109.46749 * 299.99565 * 4 3 2 24 24 H 1.09001 * 109.46851 * 59.99690 * 5 4 3 25 25 H 1.08999 * 109.46962 * 300.00086 * 5 4 3 26 26 H 1.07998 * 119.87313 * 0.02562 * 7 6 5 27 27 H 1.08007 * 120.12325 * 179.74770 * 8 7 6 28 28 H 0.97001 * 120.00110 * 179.97438 * 13 12 10 29 29 H 1.08004 * 120.12753 * 180.02562 * 18 9 8 30 30 H 1.08003 * 119.87743 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.3055 -1.4100 5 6 4.6479 0.3068 -1.4099 6 6 5.1500 0.6064 -2.7988 7 6 5.3753 -0.4331 -3.6880 8 6 5.8389 -0.1716 -4.9571 9 6 6.0736 1.1577 -5.3545 10 6 6.5439 1.4389 -6.6579 11 1 6.3602 0.7403 -7.4608 12 6 7.2475 2.6226 -6.9078 13 7 7.7735 3.2929 -5.9150 14 14 7.4356 3.2455 -8.6587 15 1 6.2999 4.1434 -8.9893 16 1 8.7116 3.9949 -8.7832 17 1 7.4447 2.0934 -9.5957 18 6 5.8364 2.2051 -4.4452 19 6 5.3778 1.9199 -3.1795 20 1 2.9718 -0.9775 0.3143 21 1 2.9709 0.7623 0.6901 22 1 2.7541 1.2837 -1.7244 23 1 2.7548 -0.4562 -2.1001 24 1 5.0120 -0.6713 -1.0953 25 1 5.0105 1.0686 -0.7198 26 1 5.1899 -1.4522 -3.3824 27 1 6.0177 -0.9832 -5.6469 28 1 8.2615 4.1131 -6.0882 29 1 6.0128 3.2291 -4.7399 30 1 5.1946 2.7222 -2.4801 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368293.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:07 Heat of formation + Delta-G solvation = 17.120064 kcal Electronic energy + Delta-G solvation = -12939.900069 eV Core-core repulsion = 10698.775210 eV Total energy + Delta-G solvation = -2241.124859 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -37.87907 -36.84191 -34.73149 -33.29236 -30.43052 -29.27523 -27.47556 -24.45824 -21.83981 -20.99131 -19.74803 -17.40956 -17.30046 -15.53258 -15.24304 -14.38652 -13.99563 -13.77760 -13.68896 -12.87444 -12.76585 -12.50226 -12.01028 -11.92380 -11.66973 -11.49187 -11.25108 -11.08188 -10.86831 -10.54103 -10.35563 -10.25572 -9.56765 -9.37416 -9.12377 -7.46437 -7.29129 -6.76737 -4.35141 2.70397 2.80007 2.82118 3.05177 3.07366 3.10084 3.19843 3.92581 4.04834 4.59276 5.09212 5.14209 5.42045 5.64034 5.69799 5.96861 6.02188 6.24324 6.27052 6.42308 6.46758 6.61147 6.95124 7.07499 7.28875 7.37086 7.57911 7.60766 7.86865 8.05236 8.11609 8.29974 8.63975 8.89388 8.97482 10.17806 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.057530 B = 0.005293 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.588241 B = 5289.146835 C = 5330.526530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.212 3.788 3 C -0.030 4.030 4 C -0.110 4.110 5 C -0.052 4.052 6 C -0.216 4.216 7 C -0.087 4.087 8 C -0.227 4.227 9 C 0.109 3.891 10 C -0.465 4.465 11 H 0.077 0.923 12 C 0.076 3.924 13 N -0.794 5.794 14 Si 0.907 3.093 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.262 1.262 18 C -0.165 4.165 19 C -0.097 4.097 20 H 0.106 0.894 21 H 0.106 0.894 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.280 0.720 29 H 0.117 0.883 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.223 -2.342 6.395 7.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.105 4.105 3 C -0.070 4.070 4 C -0.149 4.149 5 C -0.089 4.089 6 C -0.217 4.217 7 C -0.106 4.106 8 C -0.246 4.246 9 C 0.106 3.894 10 C -0.494 4.494 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.419 5.419 14 Si 0.732 3.268 15 H -0.193 1.193 16 H -0.203 1.203 17 H -0.186 1.186 18 C -0.185 4.185 19 C -0.116 4.116 20 H 0.124 0.876 21 H 0.124 0.876 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.135 0.865 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.773 -2.136 6.448 7.770 hybrid contribution 0.661 0.366 -0.832 1.123 sum -3.112 -1.770 5.616 6.660 Atomic orbital electron populations 1.81192 1.13343 1.09387 1.09151 1.29470 0.95571 0.92736 0.92723 1.19498 0.80966 1.05171 1.01366 1.21658 0.97409 1.02954 0.92915 1.20194 0.92364 1.00719 0.95631 1.18993 1.13656 0.93606 0.95430 1.20380 0.99858 0.96173 0.94158 1.20975 1.11491 0.95990 0.96173 1.17624 0.88194 0.90650 0.92881 1.19611 1.30875 1.03599 0.95336 0.90508 1.25899 0.93267 0.95921 0.99034 1.69827 1.24534 1.14270 1.33285 0.86330 0.78306 0.79590 0.82602 1.19291 1.20332 1.18641 1.21322 1.03862 0.99562 0.93715 1.20551 1.00267 0.94434 0.96300 0.87575 0.87556 0.91261 0.91313 0.92491 0.92393 0.89532 0.89171 0.90910 0.86548 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.85 18.54 42.15 0.78 -6.06 16 2 C 0.21 2.55 15.43 -20.76 -0.32 2.23 16 3 C -0.03 -0.26 5.70 -29.52 -0.17 -0.43 16 4 C -0.11 -1.35 5.15 -26.73 -0.14 -1.49 16 5 C -0.05 -0.73 5.33 -27.88 -0.15 -0.88 16 6 C -0.22 -4.30 5.16 -104.33 -0.54 -4.84 16 7 C -0.09 -1.85 9.67 -39.66 -0.38 -2.23 16 8 C -0.23 -5.45 9.80 -38.88 -0.38 -5.83 16 9 C 0.11 2.86 5.57 -106.83 -0.60 2.26 16 10 C -0.46 -12.26 9.05 -37.74 -0.34 -12.60 16 11 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 12 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 13 N -0.79 -20.31 10.95 55.55 0.61 -19.70 16 14 Si 0.91 18.52 29.59 -169.99 -5.03 13.49 16 15 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 16 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 17 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 18 C -0.17 -4.19 8.70 -38.87 -0.34 -4.53 16 19 C -0.10 -2.14 9.67 -39.66 -0.38 -2.53 16 20 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 21 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 25 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 26 H 0.09 1.59 8.06 -52.49 -0.42 1.16 16 27 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 28 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 29 H 0.12 3.07 6.16 -52.48 -0.32 2.75 16 30 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 270.05 15.07 4.07 4.07 Total: -1.00 -28.51 270.05 -7.07 -35.58 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -3.67 Total: 1.67 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: -3.83 Total: -29.04 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 1.39 Total: -25.76 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.51 -7.07 -35.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368293.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.696 kcal (2) G-P(sol) polarization free energy of solvation -28.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds