Wall clock time and date at job start Mon Mar 30 2020 02:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47050 * 102.18916 * 3 2 1 5 5 C 1.53007 * 109.47197 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47108 * 179.97438 * 5 4 3 7 7 C 1.38637 * 119.75119 * 270.25066 * 6 5 4 8 8 C 1.37613 * 120.24527 * 180.26027 * 7 6 5 9 9 C 1.40709 * 119.74954 * 359.47065 * 8 7 6 10 10 C 1.41391 * 120.24881 * 180.29949 * 9 8 7 11 11 H 1.08004 * 120.00321 * 24.37553 * 10 9 8 12 12 C 1.39949 * 120.00394 * 204.37955 * 10 9 8 13 13 N 1.30826 * 119.99793 * 17.83971 * 12 10 9 14 14 Si 1.86793 * 120.00334 * 197.84214 * 12 10 9 15 15 H 1.48499 * 109.47118 * 89.99811 * 14 12 10 16 16 H 1.48498 * 109.47443 * 210.00158 * 14 12 10 17 17 H 1.48505 * 109.47294 * 329.99982 * 14 12 10 18 18 C 1.40717 * 119.50871 * 0.27696 * 9 8 7 19 19 C 1.37615 * 119.74803 * 359.97438 * 18 9 8 20 20 H 1.08998 * 109.47760 * 342.18753 * 3 2 1 21 21 H 1.09000 * 109.46990 * 222.18333 * 3 2 1 22 22 H 1.09001 * 109.47473 * 59.99914 * 4 3 2 23 23 H 1.09000 * 109.46749 * 299.99565 * 4 3 2 24 24 H 1.09001 * 109.46851 * 59.99690 * 5 4 3 25 25 H 1.08999 * 109.46962 * 300.00086 * 5 4 3 26 26 H 1.07998 * 119.87313 * 0.02562 * 7 6 5 27 27 H 1.08007 * 120.12325 * 179.74770 * 8 7 6 28 28 H 0.97001 * 120.00110 * 179.97438 * 13 12 10 29 29 H 1.08004 * 120.12753 * 180.02562 * 18 9 8 30 30 H 1.08003 * 119.87743 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.3055 -1.4100 5 6 4.6479 0.3068 -1.4099 6 6 5.1500 0.6064 -2.7988 7 6 5.3753 -0.4331 -3.6880 8 6 5.8389 -0.1716 -4.9571 9 6 6.0736 1.1577 -5.3545 10 6 6.5439 1.4389 -6.6579 11 1 6.3602 0.7403 -7.4608 12 6 7.2475 2.6226 -6.9078 13 7 7.7735 3.2929 -5.9150 14 14 7.4356 3.2455 -8.6587 15 1 6.2999 4.1434 -8.9893 16 1 8.7116 3.9949 -8.7832 17 1 7.4447 2.0934 -9.5957 18 6 5.8364 2.2051 -4.4452 19 6 5.3778 1.9199 -3.1795 20 1 2.9718 -0.9775 0.3143 21 1 2.9709 0.7623 0.6901 22 1 2.7541 1.2837 -1.7244 23 1 2.7548 -0.4562 -2.1001 24 1 5.0120 -0.6713 -1.0953 25 1 5.0105 1.0686 -0.7198 26 1 5.1899 -1.4522 -3.3824 27 1 6.0177 -0.9832 -5.6469 28 1 8.2615 4.1131 -6.0882 29 1 6.0128 3.2291 -4.7399 30 1 5.1946 2.7222 -2.4801 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368293.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:07 Heat of formation + Delta-G solvation = 2.602118 kcal Electronic energy + Delta-G solvation = -12940.529614 eV Core-core repulsion = 10698.775210 eV Total energy + Delta-G solvation = -2241.754405 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.52725 -37.89942 -36.17080 -34.79596 -31.95966 -31.06095 -28.92820 -26.03372 -23.13760 -22.77071 -21.29406 -19.16776 -18.33047 -17.13417 -16.35532 -15.93337 -15.50610 -15.26527 -14.92638 -14.31368 -14.03229 -13.83034 -13.71610 -13.37467 -13.19958 -12.85608 -12.60305 -12.42370 -12.27136 -11.99858 -11.86564 -11.43363 -11.22770 -11.11189 -10.93356 -9.27796 -9.09568 -8.59886 -6.28360 1.02085 1.21518 1.37992 1.50555 1.53550 1.86599 1.90478 2.22039 2.76088 3.22582 3.79864 4.20807 4.27459 4.56022 4.59316 4.68778 4.85355 4.89853 4.98041 5.11552 5.18821 5.23178 5.32076 5.50464 5.56517 5.62068 5.79056 6.08962 6.17127 6.35370 6.47341 6.69828 6.78264 6.99872 7.11667 8.36834 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.057530 B = 0.005293 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.588241 B = 5289.146835 C = 5330.526530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C 0.237 3.763 3 C -0.018 4.018 4 C -0.105 4.105 5 C -0.049 4.049 6 C -0.197 4.197 7 C -0.092 4.092 8 C -0.246 4.246 9 C 0.071 3.929 10 C -0.509 4.509 11 H 0.069 0.931 12 C 0.036 3.964 13 N -0.828 5.828 14 Si 0.979 3.021 15 H -0.264 1.264 16 H -0.267 1.267 17 H -0.260 1.260 18 C -0.193 4.193 19 C -0.105 4.105 20 H 0.141 0.859 21 H 0.138 0.862 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.122 0.878 27 H 0.090 0.910 28 H 0.286 0.714 29 H 0.095 0.905 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.264 -3.016 8.212 9.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.194 5.194 2 C -0.079 4.079 3 C -0.057 4.057 4 C -0.144 4.144 5 C -0.086 4.086 6 C -0.198 4.198 7 C -0.110 4.110 8 C -0.266 4.266 9 C 0.069 3.931 10 C -0.539 4.539 11 H 0.088 0.912 12 C -0.178 4.178 13 N -0.454 5.454 14 Si 0.800 3.200 15 H -0.189 1.189 16 H -0.191 1.191 17 H -0.184 1.184 18 C -0.213 4.213 19 C -0.123 4.123 20 H 0.159 0.841 21 H 0.156 0.844 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.103 0.897 25 H 0.097 0.903 26 H 0.140 0.860 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.817 -2.821 8.279 9.543 hybrid contribution 0.639 0.489 -1.235 1.474 sum -3.178 -2.332 7.044 8.072 Atomic orbital electron populations 1.81227 1.15450 1.11719 1.11046 1.30075 0.96094 0.90796 0.90936 1.19646 0.78378 1.08198 0.99526 1.21479 0.95895 1.01947 0.95112 1.20264 0.93438 1.02963 0.91918 1.19669 1.09976 0.92163 0.97984 1.20812 0.98689 0.98454 0.93064 1.21214 1.12291 0.95253 0.97846 1.17969 0.89623 0.91962 0.93544 1.19827 1.33156 1.05168 0.95725 0.91246 1.26684 0.92371 0.95543 1.03217 1.69878 1.25374 1.14892 1.35297 0.85258 0.78613 0.78903 0.77244 1.18852 1.19127 1.18421 1.21312 1.05962 0.98520 0.95468 1.20906 0.99483 0.96516 0.95429 0.84111 0.84388 0.92795 0.92371 0.89747 0.90285 0.85975 0.89186 0.90308 0.88687 0.87132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -14.85 18.54 20.00 0.37 -14.48 16 2 C 0.24 4.98 15.43 89.44 1.38 6.36 16 3 C -0.02 -0.22 5.70 28.79 0.16 -0.05 16 4 C -0.11 -2.12 5.15 30.60 0.16 -1.97 16 5 C -0.05 -1.13 5.33 29.85 0.16 -0.98 16 6 C -0.20 -7.31 5.16 -19.67 -0.10 -7.42 16 7 C -0.09 -3.72 9.67 22.22 0.21 -3.51 16 8 C -0.25 -12.01 9.80 22.73 0.22 -11.78 16 9 C 0.07 3.88 5.57 -21.29 -0.12 3.76 16 10 C -0.51 -28.18 9.05 23.46 0.21 -27.97 16 11 H 0.07 3.75 7.91 -2.91 -0.02 3.73 16 12 C 0.04 1.85 5.14 85.26 0.44 2.29 16 13 N -0.83 -43.94 10.95 21.83 0.24 -43.70 16 14 Si 0.98 39.02 29.59 68.60 2.03 41.05 16 15 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 16 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 17 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 18 C -0.19 -10.09 8.70 22.73 0.20 -9.90 16 19 C -0.11 -4.54 9.67 22.22 0.21 -4.33 16 20 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 21 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 24 H 0.08 1.61 8.08 -2.39 -0.02 1.59 16 25 H 0.08 1.60 8.08 -2.39 -0.02 1.58 16 26 H 0.12 4.02 8.06 -2.91 -0.02 3.99 16 27 H 0.09 4.22 8.06 -2.91 -0.02 4.20 16 28 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 29 H 0.10 5.27 6.16 -2.91 -0.02 5.25 16 30 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -66.03 270.05 6.91 -59.12 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.12 Total: 13.49 kcal Atomic # 6 Polarization: -58.63 SS G_CDS: 3.14 Total: -55.49 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.61 Total: -58.17 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -66.03 6.91 -59.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368293.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.724 kcal (2) G-P(sol) polarization free energy of solvation -66.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds