Wall clock time and date at job start Mon Mar 30 2020 02:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37620 * 120.12665 * 2 1 4 4 C 1.38641 * 120.24572 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.74725 * 180.02562 * 4 3 2 6 6 C 1.47201 * 109.46892 * 90.00015 * 5 4 3 7 7 N 5.21904 * 128.54045 * 37.04954 * 2 1 3 8 8 C 1.38641 * 120.50108 * 0.29121 * 4 3 2 9 9 C 1.37620 * 120.24589 * 359.44851 * 8 4 3 10 10 C 1.50697 * 120.12380 * 180.27685 * 9 8 4 11 11 C 1.40715 * 119.74729 * 0.52586 * 9 8 4 12 12 C 1.41390 * 120.24550 * 179.72046 * 11 9 8 13 13 H 1.07997 * 120.00337 * 305.61240 * 12 11 9 14 14 C 1.39955 * 119.99915 * 125.60220 * 12 11 9 15 15 N 1.30816 * 119.99884 * 161.70746 * 14 12 11 16 16 Si 1.86808 * 119.99675 * 341.71644 * 14 12 11 17 17 H 1.48490 * 109.47174 * 94.32946 * 16 14 12 18 18 H 1.48500 * 109.46660 * 214.32955 * 16 14 12 19 19 H 1.48497 * 109.46960 * 334.32880 * 16 14 12 20 20 H 1.09003 * 109.47231 * 93.62435 * 1 2 3 21 21 H 1.08997 * 109.47649 * 213.62619 * 1 2 3 22 22 H 1.08999 * 109.47261 * 333.62785 * 1 2 3 23 23 H 1.07993 * 119.87574 * 0.02562 * 3 2 1 24 24 H 1.09000 * 109.47329 * 329.99986 * 5 4 3 25 25 H 1.09003 * 109.46777 * 209.99568 * 5 4 3 26 26 H 1.07997 * 119.87098 * 179.70961 * 8 4 3 27 27 H 1.08998 * 109.47527 * 273.67135 * 10 9 8 28 28 H 1.08999 * 109.47397 * 33.67132 * 10 9 8 29 29 H 1.09004 * 109.47230 * 153.67292 * 10 9 8 30 30 H 0.97006 * 119.99675 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1903 0.0000 4 6 3.5841 1.1932 0.0005 5 6 4.3291 2.5031 0.0011 6 6 4.5711 2.9293 1.3891 7 7 4.7588 3.2580 2.4595 8 6 4.2903 0.0001 -0.0050 9 6 3.6203 -1.2020 0.0004 10 6 4.3907 -2.4972 0.0006 11 6 2.2132 -1.2171 0.0003 12 6 1.5142 -2.4461 -0.0002 13 1 1.7206 -3.1845 -0.7608 14 6 0.5548 -2.7059 0.9851 15 7 -0.3332 -3.6487 0.8010 16 14 0.5424 -1.7061 2.5631 17 1 -0.4042 -0.5708 2.4223 18 1 0.1149 -2.5699 3.6929 19 1 1.9067 -1.1832 2.8285 20 1 -0.3634 -0.0650 -1.0256 21 1 -0.3634 -0.8557 0.5691 22 1 -0.3634 0.9207 0.4565 23 1 1.6578 2.1256 0.0004 24 1 3.7353 3.2591 -0.5128 25 1 5.2826 2.3790 -0.5123 26 1 5.3701 0.0142 -0.0093 27 1 4.6292 -2.7783 -1.0251 28 1 5.3136 -2.3709 0.5667 29 1 3.7865 -3.2792 0.4605 30 1 -0.9979 -3.8289 1.4841 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369581.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:04 Heat of formation + Delta-G solvation = 16.707840 kcal Electronic energy + Delta-G solvation = -13778.046832 eV Core-core repulsion = 11536.904097 eV Total energy + Delta-G solvation = -2241.142735 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.24718 -37.66212 -35.71297 -34.11032 -33.71175 -29.91132 -28.80321 -27.35322 -25.46711 -21.59828 -21.18331 -19.37069 -18.24680 -17.18412 -16.46204 -15.89715 -15.19063 -14.99781 -14.81217 -14.62363 -14.16279 -13.98779 -13.70480 -13.53185 -13.35104 -13.15980 -12.89572 -12.64653 -12.24169 -12.10792 -11.98698 -11.72827 -11.43320 -11.25177 -10.86564 -9.13036 -8.99109 -8.63977 -6.36595 0.71133 0.87739 1.25961 1.31932 1.42150 1.92351 1.92810 2.15579 2.66706 3.22558 3.57347 4.17645 4.26421 4.34838 4.60680 4.71353 4.78072 4.83063 4.94831 4.96254 5.02583 5.08906 5.18729 5.22001 5.38695 5.55520 5.80286 5.89699 5.94703 6.15916 6.40938 6.54238 6.72694 6.89342 7.02112 8.44326 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.030892 B = 0.010954 C = 0.009915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.159422 B = 2555.630317 C = 2823.366658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.170 4.170 3 C -0.098 4.098 4 C -0.162 4.162 5 C 0.037 3.963 6 C 0.241 3.759 7 N -0.513 5.513 8 C -0.095 4.095 9 C -0.166 4.166 10 C -0.091 4.091 11 C 0.066 3.934 12 C -0.501 4.501 13 H 0.053 0.947 14 C 0.067 3.933 15 N -0.877 5.877 16 Si 0.922 3.078 17 H -0.243 1.243 18 H -0.284 1.284 19 H -0.270 1.270 20 H 0.060 0.940 21 H 0.050 0.950 22 H 0.064 0.936 23 H 0.133 0.867 24 H 0.146 0.854 25 H 0.148 0.852 26 H 0.136 0.864 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.202 9.591 -3.184 11.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.171 4.171 3 C -0.116 4.116 4 C -0.164 4.164 5 C -0.002 4.002 6 C -0.075 4.075 7 N -0.191 5.191 8 C -0.113 4.113 9 C -0.167 4.167 10 C -0.148 4.148 11 C 0.064 3.936 12 C -0.534 4.534 13 H 0.071 0.929 14 C -0.142 4.142 15 N -0.508 5.508 16 Si 0.745 3.255 17 H -0.167 1.167 18 H -0.210 1.210 19 H -0.195 1.195 20 H 0.078 0.922 21 H 0.069 0.931 22 H 0.083 0.917 23 H 0.151 0.849 24 H 0.163 0.837 25 H 0.165 0.835 26 H 0.154 0.846 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.280 9.929 -1.520 11.846 hybrid contribution -0.585 -0.624 0.353 0.925 sum 5.695 9.305 -1.166 10.972 Atomic orbital electron populations 1.20857 0.92731 1.01015 1.01726 1.20430 0.95682 0.93648 1.07312 1.20909 0.94027 0.96852 0.99812 1.19361 0.92947 0.93911 1.10157 1.18334 1.04350 0.94646 0.82861 1.29978 0.90925 0.90974 0.95646 1.81153 1.11778 1.12078 1.14119 1.20924 0.99670 0.91178 0.99489 1.20587 0.93798 0.95886 1.06444 1.20487 0.98361 0.94747 1.01160 1.17776 0.91999 0.92699 0.91106 1.18901 1.19222 1.01965 1.13305 0.92880 1.26119 0.92109 0.94949 1.01058 1.69755 1.13965 1.31717 1.35350 0.86387 0.80174 0.79893 0.78998 1.16693 1.21000 1.19458 0.92155 0.93140 0.91684 0.84934 0.83664 0.83468 0.84623 0.92084 0.91322 0.93697 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.42 8.29 71.23 0.59 -3.83 16 2 C -0.17 -7.24 4.79 -19.41 -0.09 -7.33 16 3 C -0.10 -3.34 9.31 22.22 0.21 -3.14 16 4 C -0.16 -4.79 5.11 -19.67 -0.10 -4.89 16 5 C 0.04 0.68 5.82 28.04 0.16 0.85 16 6 C 0.24 6.34 15.41 89.45 1.38 7.72 16 7 N -0.51 -17.10 18.53 20.00 0.37 -16.73 16 8 C -0.09 -3.13 9.34 22.22 0.21 -2.93 16 9 C -0.17 -6.90 5.94 -19.41 -0.12 -7.01 16 10 C -0.09 -3.43 9.67 71.23 0.69 -2.74 16 11 C 0.07 3.14 4.32 -21.29 -0.09 3.04 16 12 C -0.50 -27.22 7.45 23.46 0.17 -27.05 16 13 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 14 C 0.07 3.60 4.11 85.26 0.35 3.95 16 15 N -0.88 -49.20 13.93 21.83 0.30 -48.89 16 16 Si 0.92 43.41 24.60 68.60 1.69 45.10 16 17 H -0.24 -10.60 6.23 99.48 0.62 -9.98 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.27 -13.29 7.11 99.48 0.71 -12.59 16 20 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 21 H 0.05 2.34 3.04 -2.39 -0.01 2.33 16 22 H 0.06 2.29 8.06 -2.39 -0.02 2.27 16 23 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16 24 H 0.15 1.70 8.08 -2.39 -0.02 1.69 16 25 H 0.15 1.67 8.08 -2.39 -0.02 1.65 16 26 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.07 2.16 8.11 -2.39 -0.02 2.14 16 29 H 0.04 1.92 7.00 -2.39 -0.02 1.91 16 30 H 0.28 14.58 8.30 -92.70 -0.77 13.81 16 Total: -1.00 -64.97 258.20 6.78 -58.19 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 1.05 Total: 5.68 kcal Atomic # 6 Polarization: -46.71 SS G_CDS: 3.36 Total: -43.35 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: 0.67 Total: -65.62 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.69 Total: 45.10 kcal Total: -64.97 6.78 -58.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369581.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.900 kcal (2) G-P(sol) polarization free energy of solvation -64.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds