Wall clock time and date at job start Mon Mar 30 2020 03:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46894 * 109.47125 * 254.27452 * 3 2 1 5 5 C 1.46897 * 111.00139 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47552 * 325.00280 * 5 4 3 7 7 C 1.50701 * 109.47403 * 85.00120 * 5 4 3 8 8 H 1.07995 * 120.00545 * 234.80643 * 7 5 4 9 9 C 1.37880 * 119.99710 * 54.79502 * 7 5 4 10 10 N 1.31520 * 120.00156 * 2.52728 * 9 7 5 11 11 Si 1.86802 * 120.00014 * 182.52395 * 9 7 5 12 12 H 1.48497 * 109.47044 * 60.00185 * 11 9 7 13 13 H 1.48497 * 109.47129 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46647 * 300.00165 * 11 9 7 15 15 C 1.50701 * 109.47446 * 205.00166 * 5 4 3 16 16 C 1.38239 * 119.99688 * 330.50730 * 15 5 4 17 17 C 1.38241 * 119.99661 * 180.02562 * 16 15 5 18 18 C 1.38235 * 119.99786 * 359.94709 * 17 16 15 19 19 C 1.38232 * 120.00280 * 0.02562 * 18 17 16 20 20 C 1.38231 * 120.00343 * 0.06750 * 19 18 17 21 21 H 4.40881 * 5.52172 * 179.97438 * 4 1 2 22 22 H 1.09001 * 109.46910 * 134.27805 * 3 2 1 23 23 H 1.08996 * 109.47349 * 14.27965 * 3 2 1 24 24 H 1.00905 * 111.00250 * 303.95890 * 4 3 2 25 25 H 0.96999 * 119.99883 * 179.97438 * 10 9 7 26 26 H 1.07994 * 120.00157 * 359.97272 * 16 15 5 27 27 H 1.07994 * 119.99908 * 179.97438 * 17 16 15 28 28 H 1.08005 * 119.99744 * 179.72611 * 18 17 16 29 29 H 1.08002 * 119.99530 * 179.97438 * 19 18 17 30 30 H 1.07993 * 120.00416 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1356 0.3762 1.3331 5 6 4.6040 0.3881 1.3707 6 1 4.9904 -0.4043 0.7296 7 6 5.1083 1.7211 0.8810 8 1 5.8173 1.7646 0.0675 9 6 4.6644 2.8853 1.4715 10 7 3.8394 2.8308 2.4943 11 14 5.2349 4.5401 0.8189 12 1 4.8256 4.6797 -0.6017 13 1 4.6192 5.6275 1.6211 14 1 6.7139 4.6283 0.9189 15 6 5.0722 0.1628 2.7853 16 6 4.2894 0.5771 3.8467 17 6 4.7191 0.3709 5.1443 18 6 5.9311 -0.2506 5.3804 19 6 6.7136 -0.6653 4.3191 20 6 6.2849 -0.4575 3.0215 21 1 -1.0500 0.0002 -0.0001 22 1 3.0091 0.7183 -0.7358 23 1 3.0099 -0.9950 -0.2535 24 1 2.7596 1.2681 1.6184 25 1 3.5274 3.6498 2.9100 26 1 3.3425 1.0626 3.6621 27 1 4.1078 0.6949 5.9735 28 1 6.2689 -0.4077 6.3942 29 1 7.6607 -1.1505 4.5037 30 1 6.8964 -0.7811 2.1923 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055014789.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:10 Heat of formation + Delta-G solvation = 82.353095 kcal Electronic energy + Delta-G solvation = -13815.852106 eV Core-core repulsion = 11577.555963 eV Total energy + Delta-G solvation = -2238.296143 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.22766 -35.75678 -33.16646 -31.38259 -29.99331 -29.56841 -26.78906 -24.54917 -22.40622 -21.20536 -19.81776 -17.67030 -16.59324 -15.80305 -15.07662 -14.25088 -14.07089 -13.77142 -13.34420 -12.86037 -12.60133 -12.14373 -11.82859 -11.53637 -11.34224 -11.03205 -10.81986 -10.46209 -10.11403 -9.87783 -9.81188 -9.54403 -9.48192 -8.72763 -7.77430 -7.41745 -7.11938 -6.08934 -4.36709 2.54812 2.66530 3.20195 3.26144 3.28506 3.38203 3.43922 4.26113 4.94696 5.03130 5.10755 5.79096 5.86504 6.00284 6.11112 6.27607 6.44343 6.48232 6.52844 6.71573 6.83491 6.91349 7.17687 7.32056 7.56124 7.62217 7.78899 7.93342 8.03518 8.18725 8.27554 8.36520 8.77517 8.99293 9.36119 10.76552 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.018535 B = 0.013571 C = 0.009329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.309955 B = 2062.713266 C = 3000.655458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.149 4.149 3 C 0.162 3.838 4 N -0.685 5.685 5 C 0.237 3.763 6 H 0.039 0.961 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.072 3.928 10 N -0.877 5.877 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.276 1.276 15 C -0.019 4.019 16 C -0.051 4.051 17 C -0.148 4.148 18 C -0.152 4.152 19 C -0.144 4.144 20 C -0.134 4.134 21 H 0.210 0.790 22 H 0.052 0.948 23 H 0.076 0.924 24 H 0.369 0.631 25 H 0.268 0.732 26 H 0.144 0.856 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.913 -3.535 0.155 3.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.149 4.149 3 C 0.033 3.967 4 N -0.322 5.322 5 C 0.129 3.871 6 H 0.057 0.943 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.131 4.131 10 N -0.515 5.515 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.201 1.201 15 C -0.020 4.020 16 C -0.070 4.070 17 C -0.166 4.166 18 C -0.171 4.171 19 C -0.162 4.162 20 C -0.153 4.153 21 H 0.227 0.773 22 H 0.070 0.930 23 H 0.094 0.906 24 H 0.195 0.805 25 H 0.079 0.921 26 H 0.161 0.839 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.055 -4.019 0.537 4.190 hybrid contribution 0.490 1.932 -0.676 2.105 sum -0.565 -2.087 -0.138 2.167 Atomic orbital electron populations 1.24657 0.95720 1.03475 1.02593 1.23566 0.94797 0.98203 0.98384 1.18821 0.83140 1.00443 0.94270 1.61008 1.10129 1.40180 1.20889 1.18107 0.84904 0.94715 0.89379 0.94310 1.21685 1.27602 0.91069 1.17968 0.92240 1.25025 0.94729 0.99418 0.93968 1.69591 1.32498 1.28401 1.20999 0.86592 0.79203 0.83006 0.78932 1.20203 1.21024 1.20131 1.20126 0.92719 0.92212 0.96921 1.21333 1.01200 0.94171 0.90298 1.21092 0.96714 1.01493 0.97333 1.20764 0.96223 1.02650 0.97436 1.20739 0.99217 1.03082 0.93198 1.20826 0.97066 1.01657 0.95745 0.77295 0.93041 0.90572 0.80531 0.92105 0.83859 0.88122 0.88338 0.88127 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.14 19.25 29.55 0.57 -3.57 16 2 C -0.15 -2.88 13.60 -37.12 -0.50 -3.38 16 3 C 0.16 3.28 5.96 -6.61 -0.04 3.24 16 4 N -0.68 -15.75 5.36 -112.28 -0.60 -16.35 16 5 C 0.24 5.66 2.50 -70.02 -0.18 5.48 16 6 H 0.04 0.89 7.75 -51.93 -0.40 0.48 16 7 C -0.54 -13.93 8.62 -34.44 -0.30 -14.23 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.07 1.84 5.05 -17.82 -0.09 1.75 16 10 N -0.88 -22.42 7.97 55.43 0.44 -21.98 16 11 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 C -0.02 -0.44 4.79 -104.62 -0.50 -0.94 16 16 C -0.05 -1.20 7.66 -39.58 -0.30 -1.51 16 17 C -0.15 -3.11 10.05 -39.58 -0.40 -3.51 16 18 C -0.15 -2.98 10.05 -39.58 -0.40 -3.37 16 19 C -0.14 -2.83 10.05 -39.59 -0.40 -3.23 16 20 C -0.13 -2.90 9.70 -39.58 -0.38 -3.29 16 21 H 0.21 2.61 7.80 -54.09 -0.42 2.19 16 22 H 0.05 1.07 8.00 -51.93 -0.42 0.66 16 23 H 0.08 1.41 8.06 -51.93 -0.42 0.99 16 24 H 0.37 9.15 5.50 -39.29 -0.22 8.93 16 25 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 26 H 0.14 3.55 5.59 -52.49 -0.29 3.26 16 27 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 29 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 262.54 15.07 3.96 3.96 Total: -1.00 -26.42 262.54 -7.55 -33.97 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -3.40 Total: 11.66 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -2.92 Total: -26.56 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.16 Total: -38.33 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -26.42 -7.55 -33.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014789.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.318 kcal (2) G-P(sol) polarization free energy of solvation -26.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds