Wall clock time and date at job start Mon Mar 30 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47297 * 2 1 4 4 C 1.38753 * 119.81413 * 269.98201 * 3 2 1 5 5 C 1.37905 * 120.64536 * 180.02562 * 4 3 2 6 6 C 1.38958 * 119.91957 * 359.95909 * 5 4 3 7 7 C 1.40690 * 119.45946 * 0.03108 * 6 5 4 8 8 C 1.46664 * 106.07841 * 180.02562 * 7 6 5 9 9 C 1.34302 * 107.05007 * 359.74192 * 8 7 6 10 10 N 1.36997 * 109.92837 * 0.43154 * 9 8 7 11 11 C 1.37213 * 125.08997 * 179.81395 * 10 9 8 12 12 H 1.07994 * 120.00151 * 159.04127 * 11 10 9 13 13 C 1.38856 * 119.99722 * 338.76997 * 11 10 9 14 14 N 1.31436 * 120.00340 * 349.30740 * 13 11 10 15 15 Si 1.86807 * 119.99829 * 169.30186 * 13 11 10 16 16 H 1.48497 * 109.46789 * 94.60288 * 15 13 11 17 17 H 1.48496 * 109.47215 * 214.60478 * 15 13 11 18 18 H 1.48498 * 109.47307 * 334.60486 * 15 13 11 19 19 C 1.37785 * 119.81983 * 89.99452 * 3 2 1 20 20 H 1.08999 * 109.47277 * 299.99676 * 1 2 3 21 21 H 1.08994 * 109.47252 * 60.00589 * 1 2 3 22 22 H 1.09004 * 109.46782 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47519 * 239.99853 * 2 1 3 24 24 H 1.09004 * 109.47257 * 119.99446 * 2 1 3 25 25 H 1.07997 * 119.67751 * 0.02562 * 4 3 2 26 26 H 1.07998 * 120.03737 * 180.02562 * 5 4 3 27 27 H 1.08007 * 126.47437 * 180.02562 * 8 7 6 28 28 H 1.08000 * 125.03543 * 180.26189 * 9 8 7 29 29 H 0.97001 * 120.00118 * 180.02562 * 14 13 11 30 30 H 1.07996 * 120.17114 * 359.96484 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0711 -1.2039 5 6 2.7229 3.3709 -1.2239 6 6 2.9591 4.0410 -0.0297 7 6 2.7255 3.3822 1.1913 8 6 3.0647 4.3455 2.2440 9 6 3.4687 5.4709 1.6325 10 7 3.4072 5.3118 0.2732 11 6 3.7459 6.2695 -0.6492 12 1 3.9949 5.9816 -1.6598 13 6 3.7630 7.6092 -0.2846 14 7 3.2574 7.9827 0.8696 15 14 4.5047 8.8807 -1.4348 16 1 3.4319 9.4788 -2.2693 17 1 5.1629 9.9460 -0.6366 18 1 5.5089 8.2281 -2.3127 19 6 2.2606 2.0668 1.1954 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.0798 1.5542 -2.1343 26 1 2.8984 3.8678 -2.1666 27 1 3.0057 4.1794 3.3095 28 1 3.7914 6.3694 2.1376 29 1 3.2690 8.9187 1.1241 30 1 2.0800 1.5578 2.1306 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075233150.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:04 Heat of formation + Delta-G solvation = 40.809819 kcal Electronic energy + Delta-G solvation = -13623.753634 eV Core-core repulsion = 11383.656039 eV Total energy + Delta-G solvation = -2240.097595 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.96526 -36.77051 -33.49234 -32.25527 -30.80469 -28.20726 -27.37825 -24.87889 -22.79052 -21.40283 -19.93181 -19.34573 -17.55486 -15.63095 -15.05178 -14.61570 -14.51196 -13.69320 -13.38408 -12.91694 -12.75100 -12.64856 -12.04553 -11.82955 -11.67546 -11.37526 -11.16296 -10.77835 -10.67362 -10.59468 -10.34825 -10.11078 -9.73484 -9.19015 -8.52511 -6.97481 -6.85772 -6.54202 -4.27479 2.23482 2.64510 3.00481 3.03297 3.08472 3.81661 4.08917 4.76930 4.88353 5.06560 5.41412 5.42369 5.80920 5.86341 5.97693 6.04721 6.18249 6.24476 6.45964 6.49563 6.55171 6.58333 6.95241 7.11072 7.13029 7.18272 7.21557 7.52973 7.62044 7.69762 8.05435 8.21996 8.48440 9.03031 9.46288 10.29832 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.053143 B = 0.007703 C = 0.006993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.750539 B = 3633.872892 C = 4002.908342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.069 4.069 3 C -0.139 4.139 4 C -0.133 4.133 5 C -0.107 4.107 6 C 0.051 3.949 7 C -0.116 4.116 8 C -0.286 4.286 9 C 0.085 3.915 10 N -0.292 5.292 11 C -0.340 4.340 12 H 0.104 0.896 13 C 0.041 3.959 14 N -0.854 5.854 15 Si 0.939 3.061 16 H -0.272 1.272 17 H -0.276 1.276 18 H -0.264 1.264 19 C -0.079 4.079 20 H 0.053 0.947 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.123 0.877 28 H 0.170 0.830 29 H 0.279 0.721 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.174 -6.732 -1.388 6.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.141 4.141 4 C -0.153 4.153 5 C -0.127 4.127 6 C -0.061 4.061 7 C -0.122 4.122 8 C -0.310 4.310 9 C -0.049 4.049 10 N 0.045 4.955 11 C -0.467 4.467 12 H 0.122 0.878 13 C -0.167 4.167 14 N -0.486 5.486 15 Si 0.763 3.237 16 H -0.198 1.198 17 H -0.201 1.201 18 H -0.189 1.189 19 C -0.098 4.098 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.141 0.859 28 H 0.187 0.813 29 H 0.089 0.911 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.108 -6.224 -1.506 6.499 hybrid contribution 0.221 0.851 -0.453 0.989 sum -0.886 -5.373 -1.959 5.788 Atomic orbital electron populations 1.21757 0.95943 1.00372 1.02103 1.20303 0.95237 0.93814 1.01290 1.19206 1.06097 0.95740 0.93054 1.20275 1.04358 0.94202 0.96416 1.19847 1.03363 0.94429 0.95090 1.18377 1.05089 0.87881 0.94730 1.19027 1.05966 0.94194 0.93024 1.21276 1.18590 0.94577 0.96587 1.22082 1.01272 0.98834 0.82731 1.40222 1.42502 1.07715 1.05106 1.19834 1.46623 0.85945 0.94319 0.87787 1.25491 0.95338 0.98301 0.97539 1.69897 1.38793 1.18605 1.21354 0.85719 0.79291 0.79270 0.79372 1.19786 1.20075 1.18861 1.20076 1.00466 0.93072 0.96184 0.92788 0.92839 0.93504 0.92235 0.92225 0.87715 0.87710 0.85935 0.81317 0.91080 0.87975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.89 37.16 0.37 -1.55 16 2 C -0.07 -1.02 6.05 -27.88 -0.17 -1.18 16 3 C -0.14 -2.64 5.13 -104.60 -0.54 -3.18 16 4 C -0.13 -2.60 9.67 -39.51 -0.38 -2.99 16 5 C -0.11 -2.41 9.95 -39.44 -0.39 -2.80 16 6 C 0.05 1.29 6.75 -83.84 -0.57 0.72 16 7 C -0.12 -2.82 6.37 -105.10 -0.67 -3.49 16 8 C -0.29 -6.90 11.09 -37.57 -0.42 -7.32 16 9 C 0.09 2.23 9.89 -16.63 -0.16 2.06 16 10 N -0.29 -7.91 2.92 -59.74 -0.17 -8.08 16 11 C -0.34 -9.05 9.93 -14.91 -0.15 -9.20 16 12 H 0.10 2.64 7.85 -52.49 -0.41 2.23 16 13 C 0.04 1.04 5.35 -17.49 -0.09 0.95 16 14 N -0.85 -22.35 10.85 55.49 0.60 -21.75 16 15 Si 0.94 19.18 29.57 -169.99 -5.03 14.16 16 16 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 17 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 19 C -0.08 -1.66 9.74 -39.27 -0.38 -2.04 16 20 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 24 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 25 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 26 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 27 H 0.12 2.59 8.06 -52.48 -0.42 2.17 16 28 H 0.17 4.38 6.35 -52.49 -0.33 4.05 16 29 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 259.79 15.07 3.92 3.92 Total: -1.00 -28.09 259.79 -7.92 -36.00 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -3.68 Total: 5.77 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: -3.55 Total: -30.02 kcal Atomic # 7 Polarization: -30.26 SS G_CDS: 0.43 Total: -29.83 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.09 -7.92 -36.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075233150.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.812 kcal (2) G-P(sol) polarization free energy of solvation -28.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds