Wall clock time and date at job start Mon Mar 30 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47297 * 2 1 4 4 C 1.38753 * 119.81413 * 269.98201 * 3 2 1 5 5 C 1.37905 * 120.64536 * 180.02562 * 4 3 2 6 6 C 1.38958 * 119.91957 * 359.95909 * 5 4 3 7 7 C 1.40690 * 119.45946 * 0.03108 * 6 5 4 8 8 C 1.46664 * 106.07841 * 180.02562 * 7 6 5 9 9 C 1.34302 * 107.05007 * 359.74192 * 8 7 6 10 10 N 1.36997 * 109.92837 * 0.43154 * 9 8 7 11 11 C 1.37213 * 125.08997 * 179.81395 * 10 9 8 12 12 H 1.07994 * 120.00151 * 159.04127 * 11 10 9 13 13 C 1.38856 * 119.99722 * 338.76997 * 11 10 9 14 14 N 1.31436 * 120.00340 * 349.30740 * 13 11 10 15 15 Si 1.86807 * 119.99829 * 169.30186 * 13 11 10 16 16 H 1.48497 * 109.46789 * 94.60288 * 15 13 11 17 17 H 1.48496 * 109.47215 * 214.60478 * 15 13 11 18 18 H 1.48498 * 109.47307 * 334.60486 * 15 13 11 19 19 C 1.37785 * 119.81983 * 89.99452 * 3 2 1 20 20 H 1.08999 * 109.47277 * 299.99676 * 1 2 3 21 21 H 1.08994 * 109.47252 * 60.00589 * 1 2 3 22 22 H 1.09004 * 109.46782 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47519 * 239.99853 * 2 1 3 24 24 H 1.09004 * 109.47257 * 119.99446 * 2 1 3 25 25 H 1.07997 * 119.67751 * 0.02562 * 4 3 2 26 26 H 1.07998 * 120.03737 * 180.02562 * 5 4 3 27 27 H 1.08007 * 126.47437 * 180.02562 * 8 7 6 28 28 H 1.08000 * 125.03543 * 180.26189 * 9 8 7 29 29 H 0.97001 * 120.00118 * 180.02562 * 14 13 11 30 30 H 1.07996 * 120.17114 * 359.96484 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0711 -1.2039 5 6 2.7229 3.3709 -1.2239 6 6 2.9591 4.0410 -0.0297 7 6 2.7255 3.3822 1.1913 8 6 3.0647 4.3455 2.2440 9 6 3.4687 5.4709 1.6325 10 7 3.4072 5.3118 0.2732 11 6 3.7459 6.2695 -0.6492 12 1 3.9949 5.9816 -1.6598 13 6 3.7630 7.6092 -0.2846 14 7 3.2574 7.9827 0.8696 15 14 4.5047 8.8807 -1.4348 16 1 3.4319 9.4788 -2.2693 17 1 5.1629 9.9460 -0.6366 18 1 5.5089 8.2281 -2.3127 19 6 2.2606 2.0668 1.1954 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.0798 1.5542 -2.1343 26 1 2.8984 3.8678 -2.1666 27 1 3.0057 4.1794 3.3095 28 1 3.7914 6.3694 2.1376 29 1 3.2690 8.9187 1.1241 30 1 2.0800 1.5578 2.1306 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075233150.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:04 Heat of formation + Delta-G solvation = 27.462811 kcal Electronic energy + Delta-G solvation = -13624.332403 eV Core-core repulsion = 11383.656039 eV Total energy + Delta-G solvation = -2240.676364 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.77440 -38.39331 -35.27736 -33.72948 -32.61901 -29.91526 -29.01695 -26.72705 -24.18645 -23.07710 -21.78064 -20.98472 -19.39278 -17.55235 -16.75960 -16.29586 -15.95364 -15.25632 -15.07969 -14.64866 -14.17830 -14.06458 -13.75770 -13.48913 -13.13339 -13.09159 -12.75075 -12.64238 -12.17963 -11.87968 -11.86802 -11.61839 -11.34937 -11.02810 -10.32435 -8.75939 -8.71971 -8.39732 -6.25150 0.50309 0.96593 1.34325 1.39401 1.50677 2.09359 2.21995 2.91091 3.05580 3.28041 4.07479 4.13608 4.35405 4.47799 4.61911 4.68815 4.76171 4.79094 4.91447 5.07019 5.15082 5.17714 5.32567 5.39654 5.40842 5.47667 5.51868 5.76398 5.80536 6.01921 6.32954 6.45060 6.56129 7.13232 7.55421 8.42055 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.053143 B = 0.007703 C = 0.006993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.750539 B = 3633.872892 C = 4002.908342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.067 4.067 3 C -0.128 4.128 4 C -0.119 4.119 5 C -0.132 4.132 6 C 0.015 3.985 7 C -0.141 4.141 8 C -0.288 4.288 9 C 0.056 3.944 10 N -0.315 5.315 11 C -0.375 4.375 12 H 0.104 0.896 13 C -0.001 4.001 14 N -0.886 5.886 15 Si 1.013 2.987 16 H -0.266 1.266 17 H -0.267 1.267 18 H -0.258 1.258 19 C -0.088 4.088 20 H 0.043 0.957 21 H 0.048 0.952 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.142 0.858 26 H 0.107 0.893 27 H 0.146 0.854 28 H 0.159 0.841 29 H 0.284 0.716 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 -8.602 -2.328 9.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.130 4.130 4 C -0.138 4.138 5 C -0.152 4.152 6 C -0.095 4.095 7 C -0.146 4.146 8 C -0.312 4.312 9 C -0.079 4.079 10 N 0.021 4.979 11 C -0.502 4.502 12 H 0.122 0.878 13 C -0.206 4.206 14 N -0.519 5.519 15 Si 0.833 3.167 16 H -0.191 1.191 17 H -0.192 1.192 18 H -0.182 1.182 19 C -0.106 4.106 20 H 0.063 0.937 21 H 0.067 0.933 22 H 0.094 0.906 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.160 0.840 26 H 0.125 0.875 27 H 0.164 0.836 28 H 0.176 0.824 29 H 0.094 0.906 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.613 -8.121 -2.440 8.632 hybrid contribution 0.296 1.233 -0.162 1.279 sum -1.316 -6.888 -2.602 7.480 Atomic orbital electron populations 1.21736 0.94701 1.02113 1.01442 1.20402 0.96129 0.90741 1.03169 1.19782 1.03496 0.97757 0.91949 1.20766 1.01652 0.92947 0.98460 1.20128 1.04844 0.95862 0.94411 1.18973 1.06237 0.87874 0.96466 1.19413 1.07013 0.95710 0.92481 1.21603 1.17678 0.94117 0.97836 1.22108 1.03266 0.99353 0.83128 1.40421 1.43724 1.08501 1.05297 1.20177 1.48296 0.86964 0.94727 0.87829 1.26529 0.95040 0.99809 0.99185 1.69996 1.39543 1.19333 1.22996 0.84640 0.78499 0.76294 0.77226 1.19106 1.19160 1.18200 1.20439 1.00011 0.91915 0.98268 0.93739 0.93297 0.90629 0.90140 0.90691 0.84047 0.87477 0.83590 0.82427 0.90576 0.85517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.89 71.98 0.71 -2.49 16 2 C -0.07 -1.67 6.05 29.85 0.18 -1.49 16 3 C -0.13 -4.48 5.13 -19.85 -0.10 -4.58 16 4 C -0.12 -4.37 9.67 22.31 0.22 -4.16 16 5 C -0.13 -5.95 9.95 22.36 0.22 -5.73 16 6 C 0.01 0.78 6.75 38.93 0.26 1.04 16 7 C -0.14 -6.86 6.37 -20.17 -0.13 -6.99 16 8 C -0.29 -14.25 11.09 23.57 0.26 -13.98 16 9 C 0.06 3.04 9.89 82.99 0.82 3.86 16 10 N -0.32 -17.80 2.92 -342.90 -1.00 -18.80 16 11 C -0.37 -20.79 9.93 84.00 0.83 -19.95 16 12 H 0.10 5.49 7.85 -2.91 -0.02 5.47 16 13 C 0.00 -0.06 5.35 84.90 0.45 0.39 16 14 N -0.89 -47.97 10.85 21.65 0.23 -47.74 16 15 Si 1.01 39.81 29.57 68.60 2.03 41.83 16 16 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 17 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 18 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 19 C -0.09 -3.51 9.74 22.47 0.22 -3.29 16 20 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.08 1.72 8.08 -2.39 -0.02 1.70 16 24 H 0.07 1.68 8.08 -2.38 -0.02 1.67 16 25 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 26 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 27 H 0.15 6.23 8.06 -2.91 -0.02 6.21 16 28 H 0.16 8.72 6.35 -2.91 -0.02 8.70 16 29 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -62.68 259.79 6.33 -56.34 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 1.12 Total: 25.74 kcal Atomic # 6 Polarization: -61.32 SS G_CDS: 3.95 Total: -57.37 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -0.77 Total: -66.54 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.83 kcal Total: -62.68 6.33 -56.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075233150.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.805 kcal (2) G-P(sol) polarization free energy of solvation -62.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds