Wall clock time and date at job start Mon Mar 30 2020 02:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.47199 * 109.47446 * 2 1 4 4 N 2.60803 * 109.47171 * 359.97438 * 2 1 3 5 5 C 1.52997 * 109.47321 * 239.99884 * 2 1 3 6 6 C 1.50696 * 109.47328 * 60.00157 * 5 2 1 7 7 H 1.08005 * 119.99790 * 359.97438 * 6 5 2 8 8 C 1.37875 * 120.00452 * 180.02562 * 6 5 2 9 9 N 1.31516 * 119.99834 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00418 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46985 * 89.99600 * 10 8 6 12 12 H 1.48496 * 109.47354 * 209.99876 * 10 8 6 13 13 H 1.48504 * 109.46890 * 330.00058 * 10 8 6 14 14 C 1.50706 * 109.47313 * 119.99861 * 2 1 3 15 15 C 1.38237 * 119.99744 * 300.00581 * 14 2 1 16 16 C 1.38235 * 119.99712 * 180.02562 * 15 14 2 17 17 C 1.38234 * 120.00220 * 359.94731 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00223 * 120.01792 * 14 2 1 20 20 H 1.08995 * 109.47023 * 300.00214 * 1 2 3 21 21 H 1.09001 * 109.46677 * 60.00034 * 1 2 3 22 22 H 1.09000 * 109.46795 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47464 * 180.02562 * 5 2 1 24 24 H 1.09000 * 109.47424 * 299.99906 * 5 2 1 25 25 H 0.96998 * 120.00108 * 180.02562 * 9 8 6 26 26 H 1.08005 * 120.00088 * 359.97438 * 15 14 2 27 27 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 28 28 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 29 29 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 30 30 H 1.07998 * 119.99975 * 0.02562 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0208 1.3878 0.0000 4 7 2.3994 2.4589 -0.0011 5 6 2.0401 -0.7213 -1.2492 6 6 1.5378 -0.0109 -2.4797 7 1 0.9165 0.8670 -2.3806 8 6 1.8705 -0.4822 -3.7319 9 7 2.6266 -1.5515 -3.8526 10 14 1.2473 0.3979 -5.2572 11 1 2.2253 1.4395 -5.6619 12 1 1.0820 -0.5815 -6.3611 13 1 -0.0608 1.0354 -4.9611 14 6 2.0324 -0.7104 1.2305 15 6 1.6984 -0.2381 2.4860 16 6 2.1596 -0.8894 3.6147 17 6 2.9540 -2.0136 3.4879 18 6 3.2921 -2.4830 2.2325 19 6 2.8275 -1.8341 1.1037 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1301 -0.7217 -1.2490 24 1 1.6768 -1.7489 -1.2492 25 1 2.8610 -1.8829 -4.7335 26 1 1.0777 0.6402 2.5851 27 1 1.8990 -0.5202 4.5956 28 1 3.3140 -2.5226 4.3698 29 1 3.9163 -3.3587 2.1334 30 1 3.0889 -2.2027 0.1229 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075576626.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:51 Heat of formation + Delta-G solvation = 36.968304 kcal Electronic energy + Delta-G solvation = -13647.050874 eV Core-core repulsion = 11406.786699 eV Total energy + Delta-G solvation = -2240.264175 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.46556 -36.58836 -34.26414 -32.47199 -30.69894 -29.44366 -27.21381 -24.53100 -22.78612 -21.68725 -20.69521 -17.55062 -16.08025 -15.88065 -14.91297 -14.45393 -14.21673 -13.60941 -13.18041 -13.11836 -12.86222 -12.38937 -12.14788 -11.86393 -11.68421 -11.29005 -11.10124 -10.98213 -10.83088 -10.59443 -10.35356 -10.35210 -9.43344 -9.18061 -8.62180 -8.45728 -8.44401 -6.11134 -4.13601 1.61933 1.71004 3.28776 3.35576 3.38512 3.56973 3.63149 4.06884 4.39207 4.79869 5.13658 5.19927 5.26904 5.28501 5.45865 5.77180 5.79196 5.87678 5.96101 6.22474 6.33670 6.41166 6.55691 6.70880 6.79814 6.83736 7.03935 7.29626 7.39941 7.46723 7.83871 8.21347 8.39335 8.89274 9.51456 10.99860 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.039635 B = 0.008560 C = 0.007649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.275089 B = 3270.219719 C = 3659.553379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.071 3.929 3 C 0.252 3.748 4 N -0.470 5.470 5 C 0.035 3.965 6 C -0.525 4.525 7 H 0.059 0.941 8 C 0.064 3.936 9 N -0.891 5.891 10 Si 0.890 3.110 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.273 1.273 14 C -0.066 4.066 15 C -0.114 4.114 16 C -0.127 4.127 17 C -0.128 4.128 18 C -0.123 4.123 19 C -0.101 4.101 20 H 0.044 0.956 21 H 0.077 0.923 22 H 0.071 0.929 23 H 0.028 0.972 24 H 0.043 0.957 25 H 0.263 0.737 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 -3.020 11.365 11.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.067 3.933 3 C -0.065 4.065 4 N -0.145 5.145 5 C -0.003 4.003 6 C -0.563 4.563 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.529 5.529 10 Si 0.718 3.282 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.197 1.197 14 C -0.067 4.067 15 C -0.132 4.132 16 C -0.145 4.145 17 C -0.146 4.146 18 C -0.141 4.141 19 C -0.119 4.119 20 H 0.063 0.937 21 H 0.096 0.904 22 H 0.089 0.911 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.589 -1.501 11.229 11.439 hybrid contribution -0.352 0.035 -0.949 1.013 sum -1.940 -1.465 10.279 10.563 Atomic orbital electron populations 1.21782 0.91481 1.03093 1.01869 1.17484 0.96424 0.83184 0.96179 1.28887 0.92341 0.94236 0.91012 1.81008 1.09863 1.12958 1.10711 1.19332 0.97074 0.95769 0.88094 1.21141 1.32133 1.12401 0.90582 0.92333 1.24932 0.94931 0.94909 0.99084 1.69928 1.36423 1.22755 1.23818 0.86611 0.79404 0.79473 0.82723 1.20681 1.21078 1.19741 1.19814 0.97496 0.95928 0.93501 1.21044 1.00140 0.99859 0.92192 1.21017 0.99023 0.96388 0.98061 1.21089 0.99145 0.97038 0.97308 1.21170 1.00313 1.00135 0.92503 1.21475 0.95708 0.94777 0.99894 0.93711 0.90421 0.91051 0.95340 0.93928 0.92781 0.86506 0.86560 0.86633 0.86161 0.84029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 7.99 37.16 0.30 -1.82 16 2 C 0.07 1.37 0.56 -158.45 -0.09 1.28 16 3 C 0.25 5.41 12.49 -20.76 -0.26 5.15 16 4 N -0.47 -10.73 18.54 42.16 0.78 -9.95 16 5 C 0.04 0.82 2.68 -27.89 -0.07 0.74 16 6 C -0.52 -13.76 7.80 -34.44 -0.27 -14.03 16 7 H 0.06 1.53 6.38 -52.48 -0.34 1.20 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 10 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 14 C -0.07 -1.13 4.74 -104.62 -0.50 -1.63 16 15 C -0.11 -1.72 8.81 -39.58 -0.35 -2.07 16 16 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 17 C -0.13 -1.62 10.05 -39.58 -0.40 -2.01 16 18 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 19 C -0.10 -1.66 8.98 -39.58 -0.36 -2.02 16 20 H 0.04 0.65 7.39 -51.93 -0.38 0.26 16 21 H 0.08 1.42 6.62 -51.93 -0.34 1.08 16 22 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 23 H 0.03 0.71 7.51 -51.93 -0.39 0.32 16 24 H 0.04 1.00 7.51 -51.93 -0.39 0.61 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.12 1.64 7.57 -52.48 -0.40 1.24 16 27 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.14 2.48 5.90 -52.49 -0.31 2.17 16 LS Contribution 261.82 15.07 3.95 3.95 Total: -1.00 -29.14 261.82 -5.82 -34.95 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -3.38 Total: -1.78 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -2.88 Total: -18.94 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 1.52 Total: -34.33 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.14 -5.82 -34.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075576626.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.922 kcal (2) G-P(sol) polarization free energy of solvation -29.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds