Wall clock time and date at job start Mon Mar 30 2020 02:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.47199 * 109.47446 * 2 1 4 4 N 2.60803 * 109.47171 * 359.97438 * 2 1 3 5 5 C 1.52997 * 109.47321 * 239.99884 * 2 1 3 6 6 C 1.50696 * 109.47328 * 60.00157 * 5 2 1 7 7 H 1.08005 * 119.99790 * 359.97438 * 6 5 2 8 8 C 1.37875 * 120.00452 * 180.02562 * 6 5 2 9 9 N 1.31516 * 119.99834 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00418 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46985 * 89.99600 * 10 8 6 12 12 H 1.48496 * 109.47354 * 209.99876 * 10 8 6 13 13 H 1.48504 * 109.46890 * 330.00058 * 10 8 6 14 14 C 1.50706 * 109.47313 * 119.99861 * 2 1 3 15 15 C 1.38237 * 119.99744 * 300.00581 * 14 2 1 16 16 C 1.38235 * 119.99712 * 180.02562 * 15 14 2 17 17 C 1.38234 * 120.00220 * 359.94731 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00223 * 120.01792 * 14 2 1 20 20 H 1.08995 * 109.47023 * 300.00214 * 1 2 3 21 21 H 1.09001 * 109.46677 * 60.00034 * 1 2 3 22 22 H 1.09000 * 109.46795 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47464 * 180.02562 * 5 2 1 24 24 H 1.09000 * 109.47424 * 299.99906 * 5 2 1 25 25 H 0.96998 * 120.00108 * 180.02562 * 9 8 6 26 26 H 1.08005 * 120.00088 * 359.97438 * 15 14 2 27 27 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 28 28 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 29 29 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 30 30 H 1.07998 * 119.99975 * 0.02562 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0208 1.3878 0.0000 4 7 2.3994 2.4589 -0.0011 5 6 2.0401 -0.7213 -1.2492 6 6 1.5378 -0.0109 -2.4797 7 1 0.9165 0.8670 -2.3806 8 6 1.8705 -0.4822 -3.7319 9 7 2.6266 -1.5515 -3.8526 10 14 1.2473 0.3979 -5.2572 11 1 2.2253 1.4395 -5.6619 12 1 1.0820 -0.5815 -6.3611 13 1 -0.0608 1.0354 -4.9611 14 6 2.0324 -0.7104 1.2305 15 6 1.6984 -0.2381 2.4860 16 6 2.1596 -0.8894 3.6147 17 6 2.9540 -2.0136 3.4879 18 6 3.2921 -2.4830 2.2325 19 6 2.8275 -1.8341 1.1037 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1301 -0.7217 -1.2490 24 1 1.6768 -1.7489 -1.2492 25 1 2.8610 -1.8829 -4.7335 26 1 1.0777 0.6402 2.5851 27 1 1.8990 -0.5202 4.5956 28 1 3.3140 -2.5226 4.3698 29 1 3.9163 -3.3587 2.1334 30 1 3.0889 -2.2027 0.1229 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075576626.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:51 Heat of formation + Delta-G solvation = 21.740235 kcal Electronic energy + Delta-G solvation = -13647.711213 eV Core-core repulsion = 11406.786699 eV Total energy + Delta-G solvation = -2240.924514 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.74960 -38.08811 -35.99515 -34.38419 -31.84282 -30.77660 -28.93190 -26.18534 -24.27714 -22.95950 -22.12349 -19.13914 -17.70119 -17.36887 -16.61091 -15.73083 -15.71204 -14.97359 -14.82082 -14.52621 -14.26858 -13.97261 -13.86200 -13.31192 -13.08630 -13.03321 -12.77874 -12.69042 -12.38092 -12.19507 -12.01427 -11.77689 -11.11349 -11.09588 -10.56540 -9.72297 -9.60084 -8.19945 -6.27539 0.47959 0.59441 1.38634 1.40853 1.49883 1.88105 1.90175 2.40400 2.87020 3.15751 3.27791 3.83613 4.08288 4.25226 4.32284 4.39351 4.44523 4.70599 4.79100 4.97615 5.08340 5.16369 5.26363 5.37692 5.41479 5.54434 5.63353 5.70101 5.79200 5.82805 6.18382 6.20837 6.67424 6.84237 7.40269 8.91244 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.039635 B = 0.008560 C = 0.007649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.275089 B = 3270.219719 C = 3659.553379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.076 3.924 3 C 0.260 3.740 4 N -0.499 5.499 5 C 0.047 3.953 6 C -0.534 4.534 7 H 0.057 0.943 8 C 0.013 3.987 9 N -0.922 5.922 10 Si 0.946 3.054 11 H -0.285 1.285 12 H -0.278 1.278 13 H -0.263 1.263 14 C -0.087 4.087 15 C -0.121 4.121 16 C -0.121 4.121 17 C -0.119 4.119 18 C -0.124 4.124 19 C -0.124 4.124 20 H 0.073 0.927 21 H 0.060 0.940 22 H 0.081 0.919 23 H -0.001 1.001 24 H 0.034 0.966 25 H 0.264 0.736 26 H 0.126 0.874 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.141 0.859 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.917 -3.138 13.275 13.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.072 3.928 3 C -0.056 4.056 4 N -0.175 5.175 5 C 0.009 3.991 6 C -0.572 4.572 7 H 0.075 0.925 8 C -0.186 4.186 9 N -0.562 5.562 10 Si 0.772 3.228 11 H -0.211 1.211 12 H -0.203 1.203 13 H -0.188 1.188 14 C -0.088 4.088 15 C -0.139 4.139 16 C -0.139 4.139 17 C -0.137 4.137 18 C -0.142 4.142 19 C -0.142 4.142 20 H 0.092 0.908 21 H 0.079 0.921 22 H 0.100 0.900 23 H 0.018 0.982 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.144 0.856 27 H 0.168 0.832 28 H 0.170 0.830 29 H 0.159 0.841 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.275 -1.616 13.143 13.436 hybrid contribution -0.095 0.032 -1.463 1.466 sum -2.370 -1.584 11.680 12.023 Atomic orbital electron populations 1.21771 0.89624 1.03974 1.02468 1.17440 0.97849 0.81742 0.95719 1.29362 0.91561 0.94552 0.90139 1.80992 1.10877 1.13927 1.11666 1.19085 0.95129 0.95579 0.89294 1.21511 1.31606 1.12256 0.91824 0.92532 1.25692 0.95325 0.95665 1.01946 1.70030 1.37650 1.24066 1.24426 0.85721 0.79024 0.78392 0.79638 1.21099 1.20292 1.18766 1.19646 0.99250 0.96617 0.93298 1.21183 1.00494 1.00379 0.91839 1.21426 0.97821 0.95870 0.98784 1.21524 0.97775 0.96552 0.97821 1.21430 1.00047 1.00488 0.92259 1.21396 0.97115 0.95711 0.99991 0.90780 0.92078 0.90037 0.98230 0.94757 0.92719 0.85622 0.83223 0.83007 0.84109 0.86504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 7.99 71.98 0.58 -3.43 16 2 C 0.08 2.97 0.56 -54.73 -0.03 2.94 16 3 C 0.26 11.20 12.49 89.44 1.12 12.32 16 4 N -0.50 -22.83 18.54 20.01 0.37 -22.46 16 5 C 0.05 2.27 2.68 29.85 0.08 2.35 16 6 C -0.53 -28.58 7.80 25.60 0.20 -28.38 16 7 H 0.06 2.99 6.38 -2.91 -0.02 2.97 16 8 C 0.01 0.70 5.46 84.65 0.46 1.16 16 9 N -0.92 -53.20 13.29 21.45 0.28 -52.91 16 10 Si 0.95 43.71 29.54 68.60 2.03 45.74 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 13 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 14 C -0.09 -2.93 4.74 -19.86 -0.09 -3.03 16 15 C -0.12 -3.36 8.81 22.27 0.20 -3.16 16 16 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16 17 C -0.12 -2.55 10.05 22.27 0.22 -2.32 16 18 C -0.12 -3.21 10.05 22.27 0.22 -2.98 16 19 C -0.12 -4.11 8.98 22.27 0.20 -3.91 16 20 H 0.07 2.01 7.39 -2.39 -0.02 1.99 16 21 H 0.06 2.22 6.62 -2.39 -0.02 2.20 16 22 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 23 H 0.00 -0.03 7.51 -2.39 -0.02 -0.05 16 24 H 0.03 1.69 7.51 -2.39 -0.02 1.67 16 25 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 26 H 0.13 3.20 7.57 -2.91 -0.02 3.18 16 27 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.12 4.36 5.90 -2.91 -0.02 4.34 16 Total: -1.00 -63.07 261.82 7.19 -55.87 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 1.13 Total: 4.69 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 3.38 Total: -30.93 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: 0.66 Total: -75.37 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -63.07 7.19 -55.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075576626.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.614 kcal (2) G-P(sol) polarization free energy of solvation -63.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds