Wall clock time and date at job start Mon Mar 30 2020 03:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47560 * 2 1 4 4 H 1.08999 * 109.46530 * 55.00450 * 3 2 1 5 5 C 1.53233 * 109.46965 * 174.99254 * 3 2 1 6 6 H 1.09006 * 109.58496 * 57.86592 * 5 3 2 7 7 C 1.53000 * 109.58673 * 297.45402 * 5 3 2 8 8 S 1.81747 * 108.79987 * 177.65802 * 5 3 2 9 9 C 1.81735 * 102.30415 * 305.46399 * 8 5 3 10 10 C 1.53243 * 108.80233 * 54.53738 * 9 8 5 11 11 N 1.46374 * 109.48762 * 302.34440 * 10 9 8 12 12 C 1.36940 * 119.64569 * 245.11132 * 11 10 9 13 13 H 1.08001 * 120.00084 * 146.39175 * 12 11 10 14 14 C 1.38807 * 119.99863 * 326.38509 * 12 11 10 15 15 N 1.31624 * 120.00224 * 342.80828 * 14 12 11 16 16 Si 1.86795 * 119.99872 * 162.80902 * 14 12 11 17 17 H 1.48499 * 109.47294 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47275 * 120.00223 * 16 14 12 19 19 H 1.48505 * 109.47205 * 240.00025 * 16 14 12 20 20 H 1.09003 * 109.46817 * 300.00300 * 1 2 3 21 21 H 1.09004 * 109.47219 * 59.99293 * 1 2 3 22 22 H 1.08990 * 109.47391 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46817 * 240.00243 * 2 1 3 24 24 H 1.09004 * 109.47219 * 120.00706 * 2 1 3 25 25 H 1.09004 * 109.47111 * 59.99883 * 7 5 3 26 26 H 1.09000 * 109.47669 * 179.97438 * 7 5 3 27 27 H 1.08999 * 109.47001 * 300.00380 * 7 5 3 28 28 H 1.09007 * 109.58250 * 174.33595 * 9 8 5 29 29 H 1.09004 * 109.58361 * 294.74312 * 9 8 5 30 30 H 1.09003 * 109.46434 * 62.34512 * 10 9 8 31 31 H 1.08994 * 109.46858 * 182.34257 * 10 9 8 32 32 H 0.96992 * 120.00148 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5672 1.4441 0.1261 6 1 4.0022 0.8732 -0.6943 7 6 3.9723 0.8176 1.4619 8 16 4.1590 3.1611 0.0543 9 6 3.4335 3.7559 -1.5022 10 6 1.9198 3.5202 -1.4635 11 7 1.6525 2.0969 -1.2507 12 6 1.0339 1.3697 -2.2323 13 1 1.2877 0.3297 -2.3752 14 6 0.0804 1.9692 -3.0436 15 7 -0.4767 3.1038 -2.6765 16 14 -0.4122 1.1656 -4.6563 17 1 0.3550 -0.0929 -4.8370 18 1 -1.8656 0.8611 -4.6341 19 1 -0.1174 2.0902 -5.7804 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5140 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.8932 -0.5138 -0.8900 24 1 1.8933 -0.5140 0.8899 25 1 3.6060 -0.2080 1.5081 26 1 5.0587 0.8193 1.5495 27 1 3.5405 1.3947 2.2796 28 1 3.6346 4.8213 -1.6154 29 1 3.8670 3.2093 -2.3398 30 1 1.4830 4.0977 -0.6487 31 1 1.4788 3.8351 -2.4092 32 1 -1.1427 3.5229 -3.2436 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075576748.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:56 Heat of formation + Delta-G solvation = -3.129607 kcal Electronic energy + Delta-G solvation = -13566.152935 eV Core-core repulsion = 11459.593935 eV Total energy + Delta-G solvation = -2106.559000 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.28412 -35.41028 -33.52580 -32.58398 -30.32758 -27.50290 -25.51582 -23.74086 -22.73435 -21.17277 -18.46103 -17.30684 -17.05816 -16.18614 -15.70957 -15.39625 -14.99359 -14.61510 -14.10533 -13.71231 -13.46032 -13.07813 -12.99017 -12.77768 -12.61998 -12.54637 -12.26970 -12.20848 -11.88212 -11.78340 -11.42463 -11.13294 -10.55110 -10.33592 -8.85472 -8.41177 -7.83197 -5.36821 1.00405 1.44575 1.49394 1.57101 1.72268 2.50025 3.27744 3.48596 3.90606 4.24021 4.31717 4.37828 4.39551 4.49928 4.52552 4.66243 4.78489 4.88028 4.96945 5.10520 5.20211 5.21737 5.24727 5.35622 5.52355 5.58628 5.74193 5.91263 6.43686 7.15462 7.83227 8.34276 9.18580 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.033415 B = 0.012841 C = 0.010383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.737190 B = 2180.013834 C = 2696.081646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C 0.174 3.826 4 H 0.023 0.977 5 C -0.053 4.053 6 H 0.074 0.926 7 C -0.123 4.123 8 S -0.307 6.307 9 C -0.086 4.086 10 C 0.170 3.830 11 N -0.600 5.600 12 C -0.239 4.239 13 H 0.070 0.930 14 C -0.040 4.040 15 N -0.927 5.927 16 Si 0.952 3.048 17 H -0.267 1.267 18 H -0.294 1.294 19 H -0.294 1.294 20 H 0.033 0.967 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.010 0.990 31 H 0.076 0.924 32 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.449 -4.322 4.827 9.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.138 4.138 3 C 0.067 3.933 4 H 0.041 0.959 5 C -0.183 4.183 6 H 0.092 0.908 7 C -0.182 4.182 8 S -0.080 6.080 9 C -0.236 4.236 10 C 0.042 3.958 11 N -0.322 5.322 12 C -0.369 4.369 13 H 0.088 0.912 14 C -0.236 4.236 15 N -0.573 5.573 16 Si 0.781 3.219 17 H -0.191 1.191 18 H -0.221 1.221 19 H -0.221 1.221 20 H 0.052 0.948 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.089 0.911 30 H 0.028 0.972 31 H 0.094 0.906 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.999 -3.661 5.475 9.611 hybrid contribution -1.307 -0.411 -1.902 2.345 sum 5.692 -4.072 3.572 7.858 Atomic orbital electron populations 1.21833 0.96185 1.00519 1.02130 1.21526 0.96202 0.94571 1.01466 1.20727 0.90297 0.94196 0.88117 0.95887 1.23732 1.00026 0.92239 1.02339 0.90759 1.21628 1.01960 1.01261 0.93320 1.86144 1.70080 1.17628 1.34134 1.23975 1.01000 1.03296 0.95355 1.20684 0.89488 0.85033 1.00567 1.44147 1.67839 1.06126 1.14059 1.19242 1.13870 0.95741 1.08093 0.91222 1.25719 0.96702 0.98549 1.02657 1.70144 1.28723 1.20902 1.37532 0.85447 0.77336 0.78346 0.80811 1.19087 1.22144 1.22086 0.94770 0.91929 0.92704 0.92516 0.89893 0.89168 0.91329 0.92074 0.87690 0.91145 0.97201 0.90620 0.94133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.72 9.58 71.98 0.69 -5.03 16 2 C -0.10 -3.49 4.75 30.59 0.15 -3.34 16 3 C 0.17 6.99 2.22 45.09 0.10 7.09 16 4 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 5 C -0.05 -1.82 2.82 30.67 0.09 -1.74 16 6 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 7 C -0.12 -3.24 8.93 71.98 0.64 -2.60 16 8 S -0.31 -11.30 21.66 -56.49 -1.22 -12.53 16 9 C -0.09 -3.40 6.66 72.06 0.48 -2.92 16 10 C 0.17 8.07 5.39 86.48 0.47 8.53 16 11 N -0.60 -28.51 2.75 -677.74 -1.86 -30.37 16 12 C -0.24 -12.10 6.00 84.03 0.50 -11.60 16 13 H 0.07 3.47 6.11 -2.91 -0.02 3.45 16 14 C -0.04 -2.13 4.70 84.86 0.40 -1.73 16 15 N -0.93 -52.44 11.33 21.65 0.25 -52.20 16 16 Si 0.95 43.09 29.59 68.60 2.03 45.12 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 19 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 20 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.06 2.95 5.30 -2.38 -0.01 2.94 16 22 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.06 2.09 6.57 -2.39 -0.02 2.07 16 24 H 0.08 2.34 6.27 -2.38 -0.01 2.32 16 25 H 0.09 2.01 6.40 -2.38 -0.02 2.00 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.10 3.69 8.14 -2.38 -0.02 3.67 16 29 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 4.02 5.75 -2.39 -0.01 4.00 16 32 H 0.25 13.78 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -56.77 255.73 3.79 -52.98 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.09 Total: 10.32 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 3.52 Total: -13.33 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -1.62 Total: -82.57 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -11.30 SS G_CDS: -1.22 Total: -12.53 kcal Total: -56.77 3.79 -52.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075576748.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.853 kcal (2) G-P(sol) polarization free energy of solvation -56.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds