Wall clock time and date at job start Mon Mar 30 2020 03:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47009 * 2 1 4 4 H 1.09008 * 109.46521 * 304.98958 * 3 2 1 5 5 C 1.53238 * 109.46853 * 185.00081 * 3 2 1 6 6 H 1.08995 * 109.69888 * 302.19960 * 5 3 2 7 7 C 1.53007 * 109.58291 * 62.54515 * 5 3 2 8 8 S 1.81748 * 108.80016 * 182.33704 * 5 3 2 9 9 C 1.81741 * 102.30343 * 54.54070 * 8 5 3 10 10 C 1.53243 * 108.79885 * 305.46235 * 9 8 5 11 11 N 1.46374 * 109.49061 * 57.65535 * 10 9 8 12 12 C 1.36936 * 119.64940 * 114.91016 * 11 10 9 13 13 H 1.07993 * 120.00208 * 213.31596 * 12 11 10 14 14 C 1.38815 * 119.99460 * 33.32137 * 12 11 10 15 15 N 1.31618 * 120.00487 * 17.73584 * 14 12 11 16 16 Si 1.86802 * 119.99705 * 197.74333 * 14 12 11 17 17 H 1.48497 * 109.47318 * 59.99685 * 16 14 12 18 18 H 1.48502 * 109.47453 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47042 * 299.99681 * 16 14 12 20 20 H 1.09006 * 109.46718 * 299.99875 * 1 2 3 21 21 H 1.08998 * 109.47130 * 59.99996 * 1 2 3 22 22 H 1.09007 * 109.46779 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47218 * 240.00297 * 2 1 3 24 24 H 1.09000 * 109.47587 * 119.99754 * 2 1 3 25 25 H 1.08997 * 109.46906 * 179.30920 * 7 5 3 26 26 H 1.08998 * 109.47057 * 299.31026 * 7 5 3 27 27 H 1.09001 * 109.47132 * 59.31597 * 7 5 3 28 28 H 1.08996 * 109.58276 * 65.25520 * 9 8 5 29 29 H 1.09004 * 109.58194 * 185.66781 * 9 8 5 30 30 H 1.09002 * 109.46743 * 177.66160 * 10 9 8 31 31 H 1.09008 * 109.46710 * 297.65143 * 10 9 8 32 32 H 0.97001 * 120.00009 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8420 5 6 3.5671 1.4443 -0.1259 6 1 4.0040 0.8729 0.6930 7 6 3.9723 0.8177 -1.4617 8 16 4.1588 3.1613 -0.0542 9 6 3.4332 3.7562 1.5022 10 6 1.9195 3.5204 1.4634 11 7 1.6523 2.0970 1.2506 12 6 1.0332 1.3699 2.2320 13 1 1.2836 0.3288 2.3720 14 6 0.0837 1.9711 3.0468 15 7 -0.4778 3.1031 2.6784 16 14 -0.3969 1.1737 4.6662 17 1 0.8011 1.0585 5.5361 18 1 -1.4217 2.0079 5.3439 19 1 -0.9519 -0.1790 4.4064 20 1 -0.3633 0.5139 0.8901 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 5.0582 0.8311 -1.5548 26 1 3.6167 -0.2118 -1.5028 27 1 3.5306 1.3876 -2.2792 28 1 3.8667 3.2098 2.3398 29 1 3.6341 4.8216 1.6153 30 1 1.4784 3.8354 2.4090 31 1 1.4827 4.0978 0.6485 32 1 -1.1416 3.5230 3.2477 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075576750.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:58 Heat of formation + Delta-G solvation = 11.068192 kcal Electronic energy + Delta-G solvation = -13565.274894 eV Core-core repulsion = 11459.331557 eV Total energy + Delta-G solvation = -2105.943337 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -37.56724 -33.70737 -31.71634 -31.00480 -28.55958 -25.84226 -23.71967 -22.23710 -20.97177 -19.48451 -16.60480 -15.56949 -15.38530 -14.43360 -14.05690 -13.77884 -13.37481 -12.95979 -12.41015 -12.09643 -11.65718 -11.62900 -11.52766 -11.06087 -10.92038 -10.82689 -10.63107 -10.42989 -10.18516 -10.04616 -9.76906 -9.48186 -8.88055 -8.41860 -7.16980 -6.59919 -5.87266 -3.36721 2.54274 3.29910 3.31869 3.38607 3.40012 4.39997 5.14769 5.26845 5.41277 5.66987 5.79737 5.90467 6.00568 6.07396 6.10300 6.15024 6.29734 6.35403 6.38334 6.54082 6.71236 6.79239 6.83362 7.08992 7.16601 7.50105 7.60670 7.74441 8.39653 9.11584 9.73454 10.28674 11.17318 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.033368 B = 0.012845 C = 0.010388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.918098 B = 2179.250202 C = 2694.755233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C 0.179 3.821 4 H 0.040 0.960 5 C -0.058 4.058 6 H 0.079 0.921 7 C -0.129 4.129 8 S -0.314 6.314 9 C -0.093 4.093 10 C 0.164 3.836 11 N -0.585 5.585 12 C -0.252 4.252 13 H 0.068 0.932 14 C 0.008 3.992 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.281 1.281 20 H 0.103 0.897 21 H 0.034 0.966 22 H 0.029 0.971 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.031 0.969 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.136 -2.790 -4.037 7.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C 0.070 3.930 4 H 0.058 0.942 5 C -0.189 4.189 6 H 0.098 0.902 7 C -0.188 4.188 8 S -0.087 6.087 9 C -0.243 4.243 10 C 0.036 3.964 11 N -0.306 5.306 12 C -0.382 4.382 13 H 0.085 0.915 14 C -0.192 4.192 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.207 1.207 20 H 0.122 0.878 21 H 0.053 0.947 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.049 0.951 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.651 -2.101 -4.672 7.627 hybrid contribution -0.899 -0.886 1.744 2.153 sum 4.752 -2.987 -2.928 6.330 Atomic orbital electron populations 1.21953 0.95318 0.99589 1.04275 1.21534 0.97073 0.95689 1.00024 1.20584 0.88687 0.93523 0.90197 0.94230 1.23739 1.02138 0.92699 1.00305 0.90233 1.21632 1.00888 1.00509 0.95794 1.86163 1.70594 1.16811 1.35107 1.24174 1.03676 1.01888 0.94560 1.20912 0.87472 0.85145 1.02845 1.43897 1.67683 1.06070 1.12989 1.18998 1.15234 0.95643 1.08310 0.91471 1.25122 0.96113 0.97907 1.00021 1.70002 1.27561 1.19523 1.36602 0.86461 0.77917 0.78845 0.84147 1.20970 1.21585 1.20661 0.87826 0.94708 0.95175 0.93578 0.91919 0.92807 0.91325 0.92175 0.90835 0.89558 0.87932 0.95090 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.58 37.16 0.36 -2.72 16 2 C -0.10 -1.97 4.75 -26.73 -0.13 -2.09 16 3 C 0.18 3.70 2.22 -67.87 -0.15 3.55 16 4 H 0.04 0.88 8.14 -51.92 -0.42 0.46 16 5 C -0.06 -1.07 2.82 -26.60 -0.08 -1.15 16 6 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 7 C -0.13 -1.95 8.91 37.16 0.33 -1.62 16 8 S -0.31 -6.06 21.66 -107.50 -2.33 -8.39 16 9 C -0.09 -1.86 6.67 37.28 0.25 -1.61 16 10 C 0.16 3.82 5.40 -3.98 -0.02 3.80 16 11 N -0.59 -13.90 2.75 -165.56 -0.46 -14.36 16 12 C -0.25 -6.38 6.00 -15.06 -0.09 -6.47 16 13 H 0.07 1.69 6.10 -52.49 -0.32 1.37 16 14 C 0.01 0.21 4.70 -17.43 -0.08 0.12 16 15 N -0.89 -24.54 11.34 55.49 0.63 -23.91 16 16 Si 0.90 20.75 29.59 -169.99 -5.03 15.72 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H 0.10 2.46 5.31 -51.93 -0.28 2.19 16 21 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.75 6.28 -51.93 -0.33 0.42 16 24 H 0.06 1.23 6.57 -51.93 -0.34 0.89 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.93 6.44 -51.93 -0.33 0.59 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 30 H 0.10 2.63 5.75 -51.93 -0.30 2.33 16 31 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 255.77 15.07 3.85 3.85 Total: -1.00 -26.48 255.77 -7.78 -34.26 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -4.84 Total: 1.01 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 0.39 Total: -8.18 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.17 Total: -38.27 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Atomic # 16 Polarization: -6.06 SS G_CDS: -2.33 Total: -8.39 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -26.48 -7.78 -34.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075576750.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.330 kcal (2) G-P(sol) polarization free energy of solvation -26.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds