Wall clock time and date at job start Mon Mar 30 2020 02:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46984 * 217.49563 * 3 2 1 5 5 C 1.50695 * 109.47206 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.00270 * 90.00151 * 5 4 3 7 7 C 1.38237 * 120.00111 * 179.97438 * 6 5 4 8 8 C 1.38231 * 119.99929 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99766 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47151 * 90.00279 * 9 8 7 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99694 * 180.27762 * 10 9 8 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 9 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 9 15 15 H 1.48504 * 109.47209 * 89.99886 * 14 12 10 16 16 H 1.48501 * 109.47358 * 209.99377 * 14 12 10 17 17 H 1.48496 * 109.47341 * 329.99989 * 14 12 10 18 18 C 1.38233 * 120.00119 * 0.25187 * 8 7 6 19 19 C 1.38232 * 119.99735 * 359.49690 * 18 8 7 20 20 H 1.09003 * 109.46656 * 97.50156 * 3 2 1 21 21 H 1.08998 * 109.47197 * 337.50009 * 3 2 1 22 22 H 1.09000 * 109.46793 * 59.99826 * 4 3 2 23 23 H 1.09006 * 109.46893 * 300.00226 * 4 3 2 24 24 H 1.08000 * 120.00181 * 359.97438 * 6 5 4 25 25 H 1.08003 * 119.99517 * 179.97438 * 7 6 5 26 26 H 1.09000 * 109.47088 * 329.99418 * 9 8 7 27 27 H 1.09007 * 109.46560 * 209.99923 * 9 8 7 28 28 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 29 29 H 1.08002 * 120.00409 * 179.72430 * 18 8 7 30 30 H 1.08008 * 119.99912 * 180.25278 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1175 1.1454 0.8781 5 6 4.6245 1.1465 0.8776 6 6 5.3149 1.8758 -0.0723 7 6 6.6972 1.8773 -0.0723 8 6 7.3892 1.1489 0.8771 9 6 8.8962 1.1500 0.8767 10 6 9.3980 2.2775 1.7416 11 1 8.6958 2.9284 2.2413 12 6 10.7534 2.4818 1.8899 13 7 11.6084 1.6894 1.2812 14 14 11.3753 3.8841 2.9558 15 1 11.5463 3.4068 4.3516 16 1 12.6805 4.3621 2.4330 17 1 10.3939 4.9981 2.9304 18 6 6.6988 0.4149 1.8235 19 6 5.3165 0.4177 1.8267 20 1 2.9713 0.1350 -1.0189 21 1 2.9718 -0.9486 0.3933 22 1 2.7542 1.0111 1.8969 23 1 2.7537 2.0946 0.4847 24 1 4.7743 2.4446 -0.8144 25 1 7.2365 2.4468 -0.8148 26 1 9.2591 1.2844 -0.1423 27 1 9.2603 0.2007 1.2698 28 1 12.5620 1.8334 1.3853 29 1 7.2394 -0.1577 2.5626 30 1 4.7771 -0.1525 2.5687 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077865324.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:12 Heat of formation + Delta-G solvation = 24.232861 kcal Electronic energy + Delta-G solvation = -12828.604372 eV Core-core repulsion = 10587.787947 eV Total energy + Delta-G solvation = -2240.816425 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.98614 -36.95792 -34.51379 -32.87012 -30.57596 -30.32070 -27.29889 -24.49567 -22.30586 -22.08785 -19.92867 -17.67169 -16.35927 -15.56540 -15.54970 -14.72359 -14.33583 -14.22216 -13.89371 -13.13787 -12.84616 -12.59501 -12.56829 -12.17753 -11.99654 -11.42931 -11.38877 -11.08475 -10.97081 -10.69405 -10.52283 -10.23882 -9.57302 -9.46411 -8.45733 -8.33105 -7.77931 -6.07543 -4.11629 1.93976 2.00589 2.64393 2.64437 3.28357 3.34892 3.38865 3.85239 4.32114 4.48983 4.86480 5.08274 5.11176 5.26990 5.42224 5.42683 5.51578 5.69738 5.89056 5.97260 6.22118 6.22628 6.58966 6.68518 7.05014 7.14579 7.14805 7.41033 7.46817 7.68406 7.81416 7.88296 8.28208 8.93822 9.52568 11.02300 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.072593 B = 0.004975 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.620372 B = 5627.088715 C = 5697.638348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.211 3.789 3 C -0.024 4.024 4 C -0.065 4.065 5 C -0.124 4.124 6 C -0.115 4.115 7 C -0.124 4.124 8 C -0.030 4.030 9 C 0.045 3.955 10 C -0.512 4.512 11 H 0.057 0.943 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.124 4.124 19 C -0.115 4.115 20 H 0.110 0.890 21 H 0.110 0.890 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.262 0.738 29 H 0.118 0.882 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.786 -2.376 -1.812 12.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.106 4.106 3 C -0.064 4.064 4 C -0.104 4.104 5 C -0.124 4.124 6 C -0.133 4.133 7 C -0.142 4.142 8 C -0.030 4.030 9 C 0.008 3.992 10 C -0.551 4.551 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.142 4.142 19 C -0.133 4.133 20 H 0.129 0.871 21 H 0.129 0.871 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.130 0.870 25 H 0.136 0.864 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.136 0.864 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.306 -2.411 -1.846 13.648 hybrid contribution 0.987 0.789 0.608 1.402 sum -12.320 -1.621 -1.238 12.487 Atomic orbital electron populations 1.81218 1.13243 1.09034 1.09179 1.29437 0.95463 0.92878 0.92837 1.19416 0.80706 1.02360 1.03934 1.20369 0.92658 0.97431 0.99923 1.19355 0.93517 1.01377 0.98189 1.20907 0.94370 0.99573 0.98427 1.21090 0.93431 0.99926 0.99754 1.20731 0.98959 0.91566 0.91774 1.18384 0.84624 0.97991 0.98151 1.21052 0.91448 1.13547 1.29015 0.92462 1.25011 0.96906 0.96504 0.95905 1.69951 1.02180 1.38074 1.43091 0.86537 0.78229 0.82409 0.80538 1.20572 1.21154 1.19791 1.21091 0.93441 1.00484 0.99201 1.20907 0.94361 0.99609 0.98396 0.87150 0.87148 0.90664 0.90671 0.87005 0.86439 0.95304 0.95319 0.92809 0.86438 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -5.91 18.54 42.16 0.78 -5.13 16 2 C 0.21 2.13 15.43 -20.76 -0.32 1.81 16 3 C -0.02 -0.18 5.68 -29.52 -0.17 -0.35 16 4 C -0.07 -0.60 5.30 -27.88 -0.15 -0.75 16 5 C -0.12 -1.60 5.13 -104.63 -0.54 -2.13 16 6 C -0.11 -1.64 9.70 -39.58 -0.38 -2.03 16 7 C -0.12 -2.22 9.70 -39.58 -0.38 -2.60 16 8 C -0.03 -0.62 5.07 -104.62 -0.53 -1.15 16 9 C 0.05 1.12 5.10 -29.03 -0.15 0.97 16 10 C -0.51 -14.00 9.09 -34.44 -0.31 -14.31 16 11 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 14 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 18 C -0.12 -2.22 9.70 -39.59 -0.38 -2.60 16 19 C -0.11 -1.64 9.70 -39.58 -0.38 -2.02 16 20 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 23 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 24 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 25 H 0.12 2.07 8.06 -52.48 -0.42 1.65 16 26 H 0.03 0.75 8.09 -51.93 -0.42 0.33 16 27 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.11 1.30 8.06 -52.48 -0.42 0.87 16 LS Contribution 274.67 15.07 4.14 4.14 Total: -1.00 -30.42 274.67 -6.92 -37.34 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -3.76 Total: -3.64 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -3.80 Total: -23.64 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 1.52 Total: -30.31 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.42 -6.92 -37.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077865324.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.570 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds