Wall clock time and date at job start Mon Mar 30 2020 02:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46984 * 217.49563 * 3 2 1 5 5 C 1.50695 * 109.47206 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.00270 * 90.00151 * 5 4 3 7 7 C 1.38237 * 120.00111 * 179.97438 * 6 5 4 8 8 C 1.38231 * 119.99929 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99766 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47151 * 90.00279 * 9 8 7 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99694 * 180.27762 * 10 9 8 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 9 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 9 15 15 H 1.48504 * 109.47209 * 89.99886 * 14 12 10 16 16 H 1.48501 * 109.47358 * 209.99377 * 14 12 10 17 17 H 1.48496 * 109.47341 * 329.99989 * 14 12 10 18 18 C 1.38233 * 120.00119 * 0.25187 * 8 7 6 19 19 C 1.38232 * 119.99735 * 359.49690 * 18 8 7 20 20 H 1.09003 * 109.46656 * 97.50156 * 3 2 1 21 21 H 1.08998 * 109.47197 * 337.50009 * 3 2 1 22 22 H 1.09000 * 109.46793 * 59.99826 * 4 3 2 23 23 H 1.09006 * 109.46893 * 300.00226 * 4 3 2 24 24 H 1.08000 * 120.00181 * 359.97438 * 6 5 4 25 25 H 1.08003 * 119.99517 * 179.97438 * 7 6 5 26 26 H 1.09000 * 109.47088 * 329.99418 * 9 8 7 27 27 H 1.09007 * 109.46560 * 209.99923 * 9 8 7 28 28 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 29 29 H 1.08002 * 120.00409 * 179.72430 * 18 8 7 30 30 H 1.08008 * 119.99912 * 180.25278 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1175 1.1454 0.8781 5 6 4.6245 1.1465 0.8776 6 6 5.3149 1.8758 -0.0723 7 6 6.6972 1.8773 -0.0723 8 6 7.3892 1.1489 0.8771 9 6 8.8962 1.1500 0.8767 10 6 9.3980 2.2775 1.7416 11 1 8.6958 2.9284 2.2413 12 6 10.7534 2.4818 1.8899 13 7 11.6084 1.6894 1.2812 14 14 11.3753 3.8841 2.9558 15 1 11.5463 3.4068 4.3516 16 1 12.6805 4.3621 2.4330 17 1 10.3939 4.9981 2.9304 18 6 6.6988 0.4149 1.8235 19 6 5.3165 0.4177 1.8267 20 1 2.9713 0.1350 -1.0189 21 1 2.9718 -0.9486 0.3933 22 1 2.7542 1.0111 1.8969 23 1 2.7537 2.0946 0.4847 24 1 4.7743 2.4446 -0.8144 25 1 7.2365 2.4468 -0.8148 26 1 9.2591 1.2844 -0.1423 27 1 9.2603 0.2007 1.2698 28 1 12.5620 1.8334 1.3853 29 1 7.2394 -0.1577 2.5626 30 1 4.7771 -0.1525 2.5687 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077865324.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:12 Heat of formation + Delta-G solvation = 7.945206 kcal Electronic energy + Delta-G solvation = -12829.310658 eV Core-core repulsion = 10587.787947 eV Total energy + Delta-G solvation = -2241.522711 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.20958 -37.83024 -35.88891 -34.54513 -32.00077 -31.57401 -28.84241 -25.94569 -23.79615 -23.34070 -21.23062 -18.50532 -18.37900 -16.97659 -16.46889 -16.28554 -15.64665 -15.40714 -14.79016 -14.46770 -14.16902 -14.06036 -13.56012 -13.55140 -13.22145 -13.11306 -12.67004 -12.55767 -12.34641 -12.19240 -11.84074 -11.47205 -11.46840 -11.25086 -10.59343 -9.58500 -9.16092 -8.18620 -6.32337 0.68635 0.74130 1.41007 1.41616 1.53208 1.86455 1.90043 2.40892 3.05273 3.11698 3.20681 4.11457 4.18315 4.35167 4.41827 4.43233 4.50604 4.81097 4.81428 4.88297 5.13601 5.24086 5.24195 5.33601 5.45048 5.52080 5.71426 5.83069 5.87309 6.17410 6.21105 6.40142 6.68352 6.81277 7.36474 8.90192 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.072593 B = 0.004975 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.620372 B = 5627.088715 C = 5697.638348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.241 3.759 3 C -0.017 4.017 4 C -0.061 4.061 5 C -0.100 4.100 6 C -0.106 4.106 7 C -0.141 4.141 8 C -0.069 4.069 9 C 0.053 3.947 10 C -0.528 4.528 11 H 0.054 0.946 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.265 1.265 18 C -0.140 4.140 19 C -0.106 4.106 20 H 0.130 0.870 21 H 0.130 0.870 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.147 0.853 25 H 0.107 0.893 26 H 0.000 1.000 27 H 0.000 1.000 28 H 0.265 0.735 29 H 0.107 0.893 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.947 -1.717 -1.286 14.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.075 4.075 3 C -0.057 4.057 4 C -0.100 4.100 5 C -0.100 4.100 6 C -0.124 4.124 7 C -0.159 4.159 8 C -0.070 4.070 9 C 0.016 3.984 10 C -0.566 4.566 11 H 0.072 0.928 12 C -0.195 4.195 13 N -0.571 5.571 14 Si 0.789 3.211 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.190 1.190 18 C -0.159 4.159 19 C -0.124 4.124 20 H 0.148 0.852 21 H 0.148 0.852 22 H 0.106 0.894 23 H 0.106 0.894 24 H 0.165 0.835 25 H 0.125 0.875 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.074 0.926 29 H 0.125 0.875 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.479 -1.754 -1.321 15.634 hybrid contribution 1.591 0.545 0.415 1.732 sum -13.888 -1.209 -0.906 13.970 Atomic orbital electron populations 1.81267 1.15143 1.10996 1.11219 1.29772 0.95623 0.91095 0.91023 1.19527 0.78724 1.02564 1.04863 1.20379 0.89379 0.98847 1.01350 1.19725 0.95613 0.98646 0.96060 1.21232 0.92658 0.99293 0.99216 1.21101 0.95352 1.00135 0.99286 1.20388 0.96292 0.95312 0.94960 1.18120 0.88589 0.95897 0.95751 1.21404 0.91837 1.14134 1.29214 0.92766 1.25935 0.97159 0.99164 0.97240 1.70078 1.02528 1.39913 1.44592 0.85448 0.77711 0.79147 0.78773 1.19700 1.20557 1.18969 1.21102 0.95358 1.00662 0.98736 1.21234 0.92652 0.99343 0.99158 0.85202 0.85192 0.89389 0.89409 0.83522 0.87521 0.98128 0.98130 0.92601 0.87494 0.83505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.23 18.54 20.01 0.37 -11.86 16 2 C 0.24 3.98 15.43 89.44 1.38 5.36 16 3 C -0.02 -0.17 5.68 28.79 0.16 0.00 16 4 C -0.06 -0.79 5.30 29.85 0.16 -0.63 16 5 C -0.10 -2.15 5.13 -19.87 -0.10 -2.25 16 6 C -0.11 -2.70 9.70 22.27 0.22 -2.49 16 7 C -0.14 -5.01 9.70 22.27 0.22 -4.80 16 8 C -0.07 -2.92 5.07 -19.87 -0.10 -3.02 16 9 C 0.05 2.83 5.10 29.10 0.15 2.98 16 10 C -0.53 -29.98 9.09 25.60 0.23 -29.74 16 11 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 12 C 0.00 0.17 5.46 84.65 0.46 0.63 16 13 N -0.93 -55.92 13.29 21.45 0.28 -55.64 16 14 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 C -0.14 -5.00 9.70 22.27 0.22 -4.78 16 19 C -0.11 -2.69 9.70 22.27 0.22 -2.48 16 20 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 21 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.09 1.02 8.09 -2.39 -0.02 1.00 16 23 H 0.09 1.02 8.09 -2.38 -0.02 1.00 16 24 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 25 H 0.11 3.90 8.06 -2.91 -0.02 3.87 16 26 H 0.00 0.02 8.09 -2.39 -0.02 0.00 16 27 H 0.00 0.02 8.08 -2.38 -0.02 0.00 16 28 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 29 H 0.11 3.90 8.06 -2.91 -0.02 3.87 16 30 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -69.59 274.67 7.01 -62.59 By element: Atomic # 1 Polarization: -0.93 SS G_CDS: 1.12 Total: 0.19 kcal Atomic # 6 Polarization: -44.43 SS G_CDS: 3.21 Total: -41.23 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: 0.66 Total: -67.49 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -69.59 7.01 -62.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077865324.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.533 kcal (2) G-P(sol) polarization free energy of solvation -69.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds