Wall clock time and date at job start Mon Mar 30 2020 02:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47224 * 301.11291 * 3 2 1 5 5 N 1.46505 * 109.46788 * 179.97438 * 4 3 2 6 6 C 1.38855 * 119.99648 * 179.97438 * 5 4 3 7 7 C 1.39568 * 119.84643 * 359.73541 * 6 5 4 8 8 C 1.36336 * 120.16398 * 179.71732 * 7 6 5 9 9 C 1.40887 * 119.83522 * 0.54986 * 8 7 6 10 10 C 1.41138 * 120.15888 * 179.70431 * 9 8 7 11 11 H 1.07998 * 120.00076 * 204.63105 * 10 9 8 12 12 C 1.39867 * 119.99657 * 24.62602 * 10 9 8 13 13 N 1.30899 * 120.00270 * 17.95962 * 12 10 9 14 14 Si 1.86808 * 119.99673 * 197.95959 * 12 10 9 15 15 H 1.48496 * 109.47088 * 60.00108 * 14 12 10 16 16 H 1.48501 * 109.46866 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46731 * 299.99953 * 14 12 10 18 18 C 1.40883 * 119.68869 * 359.72272 * 9 8 7 19 19 C 1.36343 * 119.84059 * 359.97438 * 18 9 8 20 20 H 4.44647 * 5.63438 * 179.97438 * 4 1 2 21 21 H 1.09001 * 109.46775 * 181.10973 * 3 2 1 22 22 H 1.09006 * 109.46781 * 61.11208 * 3 2 1 23 23 H 1.08997 * 109.47083 * 60.00358 * 4 3 2 24 24 H 1.08998 * 109.47410 * 299.99882 * 4 3 2 25 25 H 0.96996 * 120.00184 * 0.02562 * 5 4 3 26 26 H 1.08003 * 119.91446 * 359.97233 * 7 6 5 27 27 H 1.08000 * 120.08688 * 180.27597 * 8 7 6 28 28 H 0.97001 * 120.00134 * 179.97438 * 13 12 10 29 29 H 1.08003 * 120.08598 * 179.97438 * 18 9 8 30 30 H 1.07998 * 119.92670 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.7445 1.2349 5 7 4.6214 -0.7443 1.2345 6 6 5.3160 -1.3650 2.2643 7 6 4.6152 -1.9832 3.3009 8 6 5.2906 -2.5996 4.3122 9 6 6.6994 -2.6013 4.3152 10 6 7.4055 -3.2319 5.3620 11 1 8.4118 -2.9198 5.5993 12 6 6.8019 -4.2610 6.0920 13 7 5.7540 -4.8788 5.6087 14 14 7.4913 -4.7536 7.7569 15 1 7.4466 -3.5879 8.6758 16 1 6.6784 -5.8609 8.3212 17 1 8.8972 -5.2042 7.5967 18 6 7.4002 -1.9703 3.2685 19 6 6.7117 -1.3632 2.2604 20 1 -1.0499 0.0000 0.0004 21 1 3.0088 1.0283 0.0199 22 1 3.0095 -0.4957 -0.8999 23 1 2.7935 -1.7721 1.2150 24 1 2.7929 -0.2482 2.1348 25 1 5.1061 -0.3100 0.5154 26 1 3.5352 -1.9769 3.2998 27 1 4.7470 -3.0814 5.1114 28 1 5.3356 -5.5927 6.1149 29 1 8.4802 -1.9674 3.2646 30 1 7.2475 -0.8787 1.4575 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082497052.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:29 Heat of formation + Delta-G solvation = 68.104702 kcal Electronic energy + Delta-G solvation = -13016.014343 eV Core-core repulsion = 10777.100343 eV Total energy + Delta-G solvation = -2238.914000 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.03064 -35.91117 -33.95031 -32.66836 -30.00215 -29.43791 -27.88464 -24.49880 -23.08613 -20.92506 -19.87732 -18.17274 -17.18649 -16.03898 -15.15700 -15.08138 -14.86340 -13.88267 -13.56533 -12.86202 -12.51212 -12.45902 -12.29109 -11.77518 -11.62370 -11.17169 -10.99603 -10.82994 -10.46362 -10.22705 -10.14982 -9.69389 -9.26888 -9.20586 -8.52256 -7.47606 -6.62744 -6.38426 -4.02006 2.74289 2.79346 2.94636 3.11949 3.15586 3.18805 3.37644 4.06642 4.10525 4.67908 4.78302 5.21346 5.23760 5.49843 5.83630 5.93642 6.13020 6.14698 6.29087 6.34830 6.93776 6.95807 7.21711 7.37343 7.55658 7.56161 7.70798 7.85931 8.16823 8.29854 8.49742 8.71307 8.81044 9.07628 9.16777 10.39124 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.051389 B = 0.005725 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.735812 B = 4889.469588 C = 5350.277547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.177 4.177 3 C -0.023 4.023 4 C 0.144 3.856 5 N -0.763 5.763 6 C 0.089 3.911 7 C -0.163 4.163 8 C -0.125 4.125 9 C 0.075 3.925 10 C -0.468 4.468 11 H 0.072 0.928 12 C 0.075 3.925 13 N -0.808 5.808 14 Si 0.903 3.097 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.268 1.268 18 C -0.188 4.188 19 C -0.158 4.158 20 H 0.217 0.783 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.384 0.616 26 H 0.088 0.912 27 H 0.118 0.882 28 H 0.277 0.723 29 H 0.092 0.908 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.684 5.863 -6.361 10.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.178 4.178 3 C -0.060 4.060 4 C 0.019 3.981 5 N -0.400 5.400 6 C -0.007 4.007 7 C -0.185 4.185 8 C -0.145 4.145 9 C 0.072 3.928 10 C -0.499 4.499 11 H 0.091 0.909 12 C -0.140 4.140 13 N -0.435 5.435 14 Si 0.728 3.272 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.193 1.193 18 C -0.208 4.208 19 C -0.180 4.180 20 H 0.234 0.766 21 H 0.107 0.893 22 H 0.107 0.893 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.217 0.783 26 H 0.106 0.894 27 H 0.136 0.864 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.006 5.604 -6.216 10.301 hybrid contribution 0.198 -0.210 0.447 0.532 sum -5.808 5.393 -5.769 9.803 Atomic orbital electron populations 1.24857 0.95912 1.01361 1.00959 1.22928 0.94325 1.00173 1.00355 1.18881 0.84983 1.02200 0.99967 1.20880 0.82512 0.99078 0.95653 1.43798 1.03023 1.65730 1.27423 1.17332 0.90608 1.01604 0.91196 1.20109 0.97174 1.04429 0.96767 1.20938 0.94630 1.00535 0.98418 1.17496 0.91851 0.91735 0.91685 1.19346 1.01122 1.15620 1.13847 0.90948 1.25794 0.94428 0.95113 0.98669 1.69847 1.19181 1.18062 1.36406 0.86462 0.79656 0.78496 0.82562 1.19074 1.20584 1.19263 1.20543 0.97501 1.06725 0.96025 1.19808 0.91607 1.06234 1.00319 0.76641 0.89276 0.89257 0.93060 0.93114 0.78310 0.89411 0.86376 0.91256 0.89019 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.37 19.25 29.55 0.57 -1.80 16 2 C -0.18 -2.22 13.34 -37.12 -0.50 -2.72 16 3 C -0.02 -0.28 5.82 -29.52 -0.17 -0.45 16 4 C 0.14 2.20 4.85 -4.04 -0.02 2.18 16 5 N -0.76 -13.29 5.70 -58.50 -0.33 -13.63 16 6 C 0.09 1.98 6.67 -83.69 -0.56 1.42 16 7 C -0.16 -3.91 9.23 -39.77 -0.37 -4.27 16 8 C -0.13 -3.34 8.64 -39.26 -0.34 -3.68 16 9 C 0.08 2.06 5.57 -106.79 -0.60 1.47 16 10 C -0.47 -12.86 9.03 -37.87 -0.34 -13.20 16 11 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 12 C 0.08 1.96 5.13 -17.34 -0.09 1.87 16 13 N -0.81 -21.70 10.96 55.54 0.61 -21.09 16 14 Si 0.90 19.38 29.60 -169.99 -5.03 14.35 16 15 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 16 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 18 C -0.19 -4.70 9.74 -39.26 -0.38 -5.08 16 19 C -0.16 -3.57 9.82 -39.77 -0.39 -3.96 16 20 H 0.22 1.59 7.80 -54.10 -0.42 1.17 16 21 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.05 0.84 7.94 -51.93 -0.41 0.43 16 24 H 0.05 0.82 7.91 -51.93 -0.41 0.41 16 25 H 0.38 5.73 8.47 -40.82 -0.35 5.38 16 26 H 0.09 1.94 6.68 -52.48 -0.35 1.59 16 27 H 0.12 3.26 6.16 -52.49 -0.32 2.94 16 28 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 29 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 30 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 268.24 15.07 4.04 4.04 Total: -1.00 -29.20 268.24 -7.40 -36.60 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -3.51 Total: 7.97 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: -3.18 Total: -28.23 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.28 Total: -34.72 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.20 -7.40 -36.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082497052.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.700 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds