Wall clock time and date at job start Mon Mar 30 2020 02:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47224 * 301.11291 * 3 2 1 5 5 N 1.46505 * 109.46788 * 179.97438 * 4 3 2 6 6 C 1.38855 * 119.99648 * 179.97438 * 5 4 3 7 7 C 1.39568 * 119.84643 * 359.73541 * 6 5 4 8 8 C 1.36336 * 120.16398 * 179.71732 * 7 6 5 9 9 C 1.40887 * 119.83522 * 0.54986 * 8 7 6 10 10 C 1.41138 * 120.15888 * 179.70431 * 9 8 7 11 11 H 1.07998 * 120.00076 * 204.63105 * 10 9 8 12 12 C 1.39867 * 119.99657 * 24.62602 * 10 9 8 13 13 N 1.30899 * 120.00270 * 17.95962 * 12 10 9 14 14 Si 1.86808 * 119.99673 * 197.95959 * 12 10 9 15 15 H 1.48496 * 109.47088 * 60.00108 * 14 12 10 16 16 H 1.48501 * 109.46866 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46731 * 299.99953 * 14 12 10 18 18 C 1.40883 * 119.68869 * 359.72272 * 9 8 7 19 19 C 1.36343 * 119.84059 * 359.97438 * 18 9 8 20 20 H 4.44647 * 5.63438 * 179.97438 * 4 1 2 21 21 H 1.09001 * 109.46775 * 181.10973 * 3 2 1 22 22 H 1.09006 * 109.46781 * 61.11208 * 3 2 1 23 23 H 1.08997 * 109.47083 * 60.00358 * 4 3 2 24 24 H 1.08998 * 109.47410 * 299.99882 * 4 3 2 25 25 H 0.96996 * 120.00184 * 0.02562 * 5 4 3 26 26 H 1.08003 * 119.91446 * 359.97233 * 7 6 5 27 27 H 1.08000 * 120.08688 * 180.27597 * 8 7 6 28 28 H 0.97001 * 120.00134 * 179.97438 * 13 12 10 29 29 H 1.08003 * 120.08598 * 179.97438 * 18 9 8 30 30 H 1.07998 * 119.92670 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.7445 1.2349 5 7 4.6214 -0.7443 1.2345 6 6 5.3160 -1.3650 2.2643 7 6 4.6152 -1.9832 3.3009 8 6 5.2906 -2.5996 4.3122 9 6 6.6994 -2.6013 4.3152 10 6 7.4055 -3.2319 5.3620 11 1 8.4118 -2.9198 5.5993 12 6 6.8019 -4.2610 6.0920 13 7 5.7540 -4.8788 5.6087 14 14 7.4913 -4.7536 7.7569 15 1 7.4466 -3.5879 8.6758 16 1 6.6784 -5.8609 8.3212 17 1 8.8972 -5.2042 7.5967 18 6 7.4002 -1.9703 3.2685 19 6 6.7117 -1.3632 2.2604 20 1 -1.0499 0.0000 0.0004 21 1 3.0088 1.0283 0.0199 22 1 3.0095 -0.4957 -0.8999 23 1 2.7935 -1.7721 1.2150 24 1 2.7929 -0.2482 2.1348 25 1 5.1061 -0.3100 0.5154 26 1 3.5352 -1.9769 3.2998 27 1 4.7470 -3.0814 5.1114 28 1 5.3356 -5.5927 6.1149 29 1 8.4802 -1.9674 3.2646 30 1 7.2475 -0.8787 1.4575 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082497052.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:29 Heat of formation + Delta-G solvation = 51.689283 kcal Electronic energy + Delta-G solvation = -13016.726169 eV Core-core repulsion = 10777.100343 eV Total energy + Delta-G solvation = -2239.625826 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.80781 -37.35436 -35.48885 -34.17544 -31.43786 -31.34451 -29.48173 -26.25251 -24.54144 -22.76761 -21.65758 -19.14830 -19.11903 -17.65053 -16.82139 -16.47155 -16.19323 -15.64602 -14.86755 -14.58144 -14.14051 -13.95714 -13.87518 -13.40775 -13.17110 -12.89960 -12.72839 -12.53617 -12.25676 -11.58730 -11.19518 -11.17328 -11.13487 -10.98293 -10.30512 -9.40820 -8.54938 -8.18197 -6.01149 1.11237 1.18907 1.40601 1.51692 1.60452 1.81813 1.91340 2.27847 2.84038 2.87386 3.68388 3.84940 4.13629 4.21702 4.41787 4.51702 4.54676 4.95955 5.01781 5.05564 5.11821 5.18005 5.28063 5.45660 5.67496 5.80445 5.96475 6.18951 6.38336 6.65223 6.69160 6.85367 7.08410 7.15264 7.33196 8.48474 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.051389 B = 0.005725 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.735812 B = 4889.469588 C = 5350.277547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.221 4.221 3 C -0.011 4.011 4 C 0.144 3.856 5 N -0.750 5.750 6 C 0.107 3.893 7 C -0.176 4.176 8 C -0.146 4.146 9 C 0.036 3.964 10 C -0.508 4.508 11 H 0.070 0.930 12 C 0.032 3.968 13 N -0.843 5.843 14 Si 0.977 3.023 15 H -0.263 1.263 16 H -0.270 1.270 17 H -0.261 1.261 18 C -0.196 4.196 19 C -0.162 4.162 20 H 0.247 0.753 21 H 0.105 0.895 22 H 0.103 0.897 23 H 0.038 0.962 24 H 0.042 0.958 25 H 0.401 0.599 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.282 0.718 29 H 0.099 0.901 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.168 6.783 -7.416 11.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.222 4.222 3 C -0.048 4.048 4 C 0.019 3.981 5 N -0.387 5.387 6 C 0.008 3.992 7 C -0.198 4.198 8 C -0.167 4.167 9 C 0.033 3.967 10 C -0.539 4.539 11 H 0.088 0.912 12 C -0.180 4.180 13 N -0.471 5.471 14 Si 0.799 3.201 15 H -0.187 1.187 16 H -0.195 1.195 17 H -0.185 1.185 18 C -0.216 4.216 19 C -0.184 4.184 20 H 0.264 0.736 21 H 0.123 0.877 22 H 0.121 0.879 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.237 0.763 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.501 6.553 -7.320 11.781 hybrid contribution 0.233 -0.395 0.603 0.757 sum -6.268 6.158 -6.717 11.060 Atomic orbital electron populations 1.25734 0.96891 0.99746 0.99131 1.23288 0.95107 1.01738 1.02028 1.18743 0.84931 1.02659 0.98445 1.20935 0.80956 0.98877 0.97363 1.43796 1.04070 1.64410 1.26382 1.17453 0.90876 0.99688 0.91180 1.20253 0.97953 1.04707 0.96922 1.20862 0.94717 1.01937 0.99140 1.17831 0.92462 0.93388 0.93027 1.19601 1.01578 1.17095 1.15613 0.91217 1.26630 0.94680 0.94568 1.02109 1.69918 1.20534 1.18711 1.37921 0.85338 0.79130 0.78283 0.77392 1.18739 1.19495 1.18523 1.20783 0.98150 1.06513 0.96134 1.20135 0.91991 1.05725 1.00535 0.73639 0.87681 0.87870 0.94351 0.93976 0.76336 0.88142 0.88414 0.90746 0.88250 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.87 19.25 74.32 1.43 -2.44 16 2 C -0.22 -5.05 13.34 31.13 0.42 -4.64 16 3 C -0.01 -0.23 5.82 28.79 0.17 -0.07 16 4 C 0.14 4.13 4.85 86.38 0.42 4.55 16 5 N -0.75 -24.25 5.70 -338.99 -1.93 -26.18 16 6 C 0.11 4.60 6.67 38.67 0.26 4.85 16 7 C -0.18 -8.50 9.23 22.15 0.20 -8.29 16 8 C -0.15 -8.09 8.64 22.47 0.19 -7.89 16 9 C 0.04 2.02 5.57 -21.27 -0.12 1.90 16 10 C -0.51 -28.85 9.03 23.38 0.21 -28.64 16 11 H 0.07 3.82 7.91 -2.91 -0.02 3.79 16 12 C 0.03 1.71 5.13 85.23 0.44 2.15 16 13 N -0.84 -46.75 10.96 21.82 0.24 -46.51 16 14 Si 0.98 40.44 29.60 68.60 2.03 42.47 16 15 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 16 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 17 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 18 C -0.20 -9.83 9.74 22.48 0.22 -9.61 16 19 C -0.16 -7.06 9.82 22.15 0.22 -6.84 16 20 H 0.25 2.78 7.80 -4.42 -0.03 2.74 16 21 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 23 H 0.04 1.22 7.94 -2.39 -0.02 1.20 16 24 H 0.04 1.30 7.91 -2.39 -0.02 1.28 16 25 H 0.40 10.52 8.47 -92.71 -0.79 9.74 16 26 H 0.10 4.46 6.68 -2.91 -0.02 4.45 16 27 H 0.10 5.69 6.16 -2.91 -0.02 5.67 16 28 H 0.28 14.28 8.30 -92.71 -0.77 13.51 16 29 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 30 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -64.32 268.24 4.74 -59.58 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.35 Total: 25.63 kcal Atomic # 6 Polarization: -59.04 SS G_CDS: 4.05 Total: -54.98 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -1.69 Total: -72.70 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -64.32 4.74 -59.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082497052.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.271 kcal (2) G-P(sol) polarization free energy of solvation -64.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds