Wall clock time and date at job start Mon Mar 30 2020 02:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38900 * 125.35742 * 2 1 4 4 C 1.40889 * 126.93199 * 359.97065 * 3 2 1 5 5 H 1.08001 * 119.99842 * 329.35342 * 4 3 2 6 6 C 1.39743 * 120.00060 * 149.07899 * 4 3 2 7 7 N 1.31050 * 119.99778 * 341.28119 * 6 4 3 8 8 Si 1.86798 * 120.00086 * 161.28657 * 6 4 3 9 9 H 1.48500 * 109.47066 * 89.99614 * 8 6 4 10 10 H 1.48493 * 109.47230 * 209.99961 * 8 6 4 11 11 H 1.48504 * 109.46955 * 330.00223 * 8 6 4 12 12 C 1.47672 * 106.13676 * 180.22853 * 3 2 1 13 13 C 1.39198 * 133.77651 * 180.56535 * 12 3 2 14 14 C 1.37875 * 119.69620 * 179.56207 * 13 12 3 15 15 C 1.38668 * 120.25243 * 359.65030 * 14 13 12 16 16 C 1.37868 * 120.62227 * 0.02562 * 15 14 13 17 17 C 1.39119 * 119.97431 * 0.02562 * 16 15 14 18 18 N 1.35637 * 125.35854 * 179.97438 * 2 1 3 19 19 C 1.46496 * 124.69326 * 0.03425 * 18 2 1 20 20 H 1.08995 * 109.47114 * 89.99799 * 1 2 3 21 21 H 1.09005 * 109.46860 * 209.99724 * 1 2 3 22 22 H 1.09000 * 109.47004 * 329.99228 * 1 2 3 23 23 H 0.97005 * 119.99636 * 183.32621 * 7 6 4 24 24 H 1.08001 * 120.14623 * 359.23322 * 13 12 3 25 25 H 1.07996 * 119.87276 * 179.67195 * 14 13 12 26 26 H 1.07999 * 119.69303 * 180.02562 * 15 14 13 27 27 H 1.07997 * 120.01461 * 179.97438 * 16 15 14 28 28 H 1.09002 * 109.47033 * 89.99699 * 19 18 2 29 29 H 1.08994 * 109.47664 * 210.00104 * 19 18 2 30 30 H 1.08999 * 109.47206 * 330.00174 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3108 1.1328 0.0000 4 6 1.8822 2.4749 -0.0006 5 1 0.9516 2.7444 -0.4778 6 6 2.6584 3.4566 0.6213 7 7 3.5662 3.1135 1.5020 8 14 2.4018 5.2576 0.1974 9 1 1.3824 5.8398 1.1068 10 1 3.6833 5.9909 0.3561 11 1 1.9357 5.3739 -1.2078 12 6 3.7052 0.6467 -0.0057 13 6 4.9454 1.2786 0.0017 14 6 6.0978 0.5216 0.0020 15 6 6.0240 -0.8631 0.0024 16 6 4.8018 -1.5013 0.0019 17 6 3.6279 -0.7547 0.0005 18 7 2.2919 -1.1062 0.0005 19 6 1.7921 -2.4832 0.0004 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3633 0.8899 0.5140 23 1 4.0715 3.7973 1.9691 24 1 5.0047 2.3570 0.0017 25 1 7.0615 1.0089 0.0024 26 1 6.9323 -1.4473 0.0031 27 1 4.7558 -2.5802 0.0018 28 1 1.6686 -2.8249 -1.0273 29 1 2.5044 -3.1284 0.5146 30 1 0.8313 -2.5211 0.5137 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082529845.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:12 Heat of formation + Delta-G solvation = 49.747840 kcal Electronic energy + Delta-G solvation = -14071.195408 eV Core-core repulsion = 11831.485395 eV Total energy + Delta-G solvation = -2239.710013 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.75830 -35.87414 -33.78825 -31.18032 -29.93065 -28.97630 -26.88363 -25.84044 -23.33993 -20.70387 -20.21780 -18.56130 -16.73731 -15.48739 -14.91477 -14.63118 -14.33979 -13.94207 -13.15568 -12.72280 -12.38759 -12.22430 -12.02054 -11.73791 -11.59762 -11.22529 -11.15227 -10.87700 -10.67463 -10.18527 -10.06406 -9.86481 -9.34958 -8.86748 -8.13690 -6.80738 -6.59226 -6.22803 -3.94079 2.40318 2.82381 3.10741 3.20379 3.25975 4.00904 4.09745 4.19043 5.02040 5.48098 5.53580 5.76908 5.80801 5.92101 6.08493 6.12262 6.20194 6.29483 6.55155 6.63873 6.79891 6.95417 7.00557 7.19442 7.37574 7.43905 7.61204 7.82460 8.04183 8.28104 8.44842 8.70343 8.78438 9.15228 9.19159 10.51732 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.027161 B = 0.013322 C = 0.009276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.642432 B = 2101.207911 C = 3017.766990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.127 4.127 3 C 0.076 3.924 4 C -0.457 4.457 5 H 0.074 0.926 6 C 0.079 3.921 7 N -0.809 5.809 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.264 1.264 12 C -0.100 4.100 13 C -0.010 4.010 14 C -0.205 4.205 15 C -0.108 4.108 16 C -0.168 4.168 17 C 0.097 3.903 18 N -0.480 5.480 19 C 0.091 3.909 20 H 0.038 0.962 21 H 0.036 0.964 22 H 0.067 0.933 23 H 0.274 0.726 24 H 0.119 0.881 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.260 -4.875 -1.775 5.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.229 4.229 3 C 0.070 3.930 4 C -0.490 4.490 5 H 0.092 0.908 6 C -0.136 4.136 7 N -0.437 5.437 8 Si 0.722 3.278 9 H -0.200 1.200 10 H -0.204 1.204 11 H -0.188 1.188 12 C -0.106 4.106 13 C -0.028 4.028 14 C -0.226 4.226 15 C -0.127 4.127 16 C -0.190 4.190 17 C -0.011 4.011 18 N -0.166 5.166 19 C -0.052 4.052 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.137 0.863 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.294 -5.058 -1.645 5.326 hybrid contribution -0.003 0.680 -0.006 0.680 sum -0.297 -4.377 -1.650 4.687 Atomic orbital electron populations 1.19779 0.90150 1.00662 0.99523 1.20215 0.91767 0.84859 1.26019 1.17815 0.87712 0.91504 0.96000 1.18508 1.06564 0.90356 1.33538 0.90776 1.25680 0.93888 1.00453 0.93547 1.69969 1.20012 1.35197 1.18521 0.86505 0.78287 0.82989 0.79982 1.19956 1.20423 1.18821 1.19304 0.94481 0.90685 1.06136 1.20665 0.90260 0.99465 0.92453 1.20623 0.97345 0.93618 1.10977 1.20396 0.95383 0.94485 1.02472 1.19654 0.90530 0.97126 1.11653 1.18225 0.83833 0.94639 1.04400 1.42781 1.03389 1.04360 1.66076 1.21535 0.99808 0.82950 1.00881 0.94303 0.94543 0.91410 0.91532 0.86309 0.88133 0.87963 0.88612 0.93399 0.91869 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.88 9.85 36.01 0.35 -0.52 16 2 C -0.13 -3.11 6.96 -80.66 -0.56 -3.67 16 3 C 0.08 2.06 5.72 -104.80 -0.60 1.47 16 4 C -0.46 -12.41 8.85 -38.02 -0.34 -12.75 16 5 H 0.07 1.94 7.91 -52.49 -0.42 1.52 16 6 C 0.08 2.05 4.91 -17.32 -0.09 1.96 16 7 N -0.81 -21.68 10.23 55.54 0.57 -21.11 16 8 Si 0.90 19.40 29.60 -169.99 -5.03 14.37 16 9 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 10 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 12 C -0.10 -2.66 5.79 -104.89 -0.61 -3.27 16 13 C -0.01 -0.25 8.73 -39.36 -0.34 -0.59 16 14 C -0.21 -4.48 10.03 -39.56 -0.40 -4.87 16 15 C -0.11 -2.20 10.01 -39.56 -0.40 -2.59 16 16 C -0.17 -3.57 9.88 -39.39 -0.39 -3.96 16 17 C 0.10 2.36 6.77 -83.90 -0.57 1.80 16 18 N -0.48 -10.90 3.15 -116.18 -0.37 -11.26 16 19 C 0.09 1.54 10.75 59.84 0.64 2.19 16 20 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.04 0.63 6.88 -51.93 -0.36 0.28 16 22 H 0.07 1.38 7.91 -51.93 -0.41 0.97 16 23 H 0.27 6.79 8.30 -40.82 -0.34 6.45 16 24 H 0.12 3.05 6.28 -52.49 -0.33 2.72 16 25 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 26 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 27 H 0.10 1.75 7.96 -52.49 -0.42 1.33 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 30 H 0.07 1.03 6.84 -51.93 -0.36 0.68 16 LS Contribution 254.99 15.07 3.84 3.84 Total: -1.00 -29.55 254.99 -7.80 -37.35 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -3.52 Total: 1.64 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -3.29 Total: -24.82 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.20 Total: -32.37 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.55 -7.80 -37.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082529845.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.095 kcal (2) G-P(sol) polarization free energy of solvation -29.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds