Wall clock time and date at job start Mon Mar 30 2020 02:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38900 * 125.35742 * 2 1 4 4 C 1.40889 * 126.93199 * 359.97065 * 3 2 1 5 5 H 1.08001 * 119.99842 * 329.35342 * 4 3 2 6 6 C 1.39743 * 120.00060 * 149.07899 * 4 3 2 7 7 N 1.31050 * 119.99778 * 341.28119 * 6 4 3 8 8 Si 1.86798 * 120.00086 * 161.28657 * 6 4 3 9 9 H 1.48500 * 109.47066 * 89.99614 * 8 6 4 10 10 H 1.48493 * 109.47230 * 209.99961 * 8 6 4 11 11 H 1.48504 * 109.46955 * 330.00223 * 8 6 4 12 12 C 1.47672 * 106.13676 * 180.22853 * 3 2 1 13 13 C 1.39198 * 133.77651 * 180.56535 * 12 3 2 14 14 C 1.37875 * 119.69620 * 179.56207 * 13 12 3 15 15 C 1.38668 * 120.25243 * 359.65030 * 14 13 12 16 16 C 1.37868 * 120.62227 * 0.02562 * 15 14 13 17 17 C 1.39119 * 119.97431 * 0.02562 * 16 15 14 18 18 N 1.35637 * 125.35854 * 179.97438 * 2 1 3 19 19 C 1.46496 * 124.69326 * 0.03425 * 18 2 1 20 20 H 1.08995 * 109.47114 * 89.99799 * 1 2 3 21 21 H 1.09005 * 109.46860 * 209.99724 * 1 2 3 22 22 H 1.09000 * 109.47004 * 329.99228 * 1 2 3 23 23 H 0.97005 * 119.99636 * 183.32621 * 7 6 4 24 24 H 1.08001 * 120.14623 * 359.23322 * 13 12 3 25 25 H 1.07996 * 119.87276 * 179.67195 * 14 13 12 26 26 H 1.07999 * 119.69303 * 180.02562 * 15 14 13 27 27 H 1.07997 * 120.01461 * 179.97438 * 16 15 14 28 28 H 1.09002 * 109.47033 * 89.99699 * 19 18 2 29 29 H 1.08994 * 109.47664 * 210.00104 * 19 18 2 30 30 H 1.08999 * 109.47206 * 330.00174 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3108 1.1328 0.0000 4 6 1.8822 2.4749 -0.0006 5 1 0.9516 2.7444 -0.4778 6 6 2.6584 3.4566 0.6213 7 7 3.5662 3.1135 1.5020 8 14 2.4018 5.2576 0.1974 9 1 1.3824 5.8398 1.1068 10 1 3.6833 5.9909 0.3561 11 1 1.9357 5.3739 -1.2078 12 6 3.7052 0.6467 -0.0057 13 6 4.9454 1.2786 0.0017 14 6 6.0978 0.5216 0.0020 15 6 6.0240 -0.8631 0.0024 16 6 4.8018 -1.5013 0.0019 17 6 3.6279 -0.7547 0.0005 18 7 2.2919 -1.1062 0.0005 19 6 1.7921 -2.4832 0.0004 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3633 0.8899 0.5140 23 1 4.0715 3.7973 1.9691 24 1 5.0047 2.3570 0.0017 25 1 7.0615 1.0089 0.0024 26 1 6.9323 -1.4473 0.0031 27 1 4.7558 -2.5802 0.0018 28 1 1.6686 -2.8249 -1.0273 29 1 2.5044 -3.1284 0.5146 30 1 0.8313 -2.5211 0.5137 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082529845.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:12 Heat of formation + Delta-G solvation = 33.928366 kcal Electronic energy + Delta-G solvation = -14071.881392 eV Core-core repulsion = 11831.485395 eV Total energy + Delta-G solvation = -2240.395997 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.50327 -37.57241 -35.64257 -32.93582 -31.60966 -30.67109 -28.67141 -27.47130 -25.09290 -22.43194 -22.00163 -20.30777 -18.57625 -17.26619 -16.62695 -16.38933 -15.92771 -15.61902 -14.84632 -14.38419 -14.17838 -13.74147 -13.63183 -13.38702 -13.24474 -12.93380 -12.77581 -12.52623 -12.44623 -11.94320 -11.81694 -11.52278 -11.15839 -10.74976 -9.94047 -8.57676 -8.47274 -8.06922 -5.89194 0.64096 1.08064 1.37666 1.42184 1.54189 2.18746 2.33728 2.51332 3.19157 3.61713 4.19595 4.21398 4.45752 4.47087 4.52120 4.55050 4.64564 4.77247 4.94313 4.98217 5.11963 5.21226 5.30947 5.45118 5.49998 5.65381 5.87393 6.03478 6.26282 6.47350 6.51643 6.89092 7.00054 7.24081 7.31023 8.63897 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.027161 B = 0.013322 C = 0.009276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.642432 B = 2101.207911 C = 3017.766990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.120 4.120 3 C 0.014 3.986 4 C -0.490 4.490 5 H 0.068 0.932 6 C 0.037 3.963 7 N -0.843 5.843 8 Si 0.965 3.035 9 H -0.266 1.266 10 H -0.273 1.273 11 H -0.264 1.264 12 C -0.141 4.141 13 C -0.042 4.042 14 C -0.202 4.202 15 C -0.104 4.104 16 C -0.162 4.162 17 C 0.072 3.928 18 N -0.484 5.484 19 C 0.083 3.917 20 H 0.055 0.945 21 H 0.067 0.933 22 H 0.056 0.944 23 H 0.276 0.724 24 H 0.096 0.904 25 H 0.126 0.874 26 H 0.148 0.852 27 H 0.133 0.867 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.006 -6.791 -2.027 7.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.223 4.223 3 C 0.008 3.992 4 C -0.523 4.523 5 H 0.086 0.914 6 C -0.174 4.174 7 N -0.472 5.472 8 Si 0.788 3.212 9 H -0.191 1.191 10 H -0.198 1.198 11 H -0.189 1.189 12 C -0.148 4.148 13 C -0.060 4.060 14 C -0.222 4.222 15 C -0.123 4.123 16 C -0.184 4.184 17 C -0.036 4.036 18 N -0.169 5.169 19 C -0.058 4.058 20 H 0.074 0.926 21 H 0.086 0.914 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.115 0.885 25 H 0.144 0.856 26 H 0.166 0.834 27 H 0.150 0.850 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.036 -7.013 -1.900 7.266 hybrid contribution -0.079 1.083 0.053 1.087 sum -0.115 -5.930 -1.847 6.212 Atomic orbital electron populations 1.19835 0.87466 1.01659 1.00838 1.20869 0.93635 0.85145 1.22651 1.18313 0.89244 0.92652 0.98975 1.18690 1.07149 0.91559 1.34861 0.91437 1.26395 0.93571 1.04352 0.93055 1.70053 1.21174 1.36344 1.19655 0.85465 0.78375 0.77833 0.79531 1.19088 1.19824 1.18852 1.19632 0.94708 0.92545 1.07889 1.20677 0.91445 0.98864 0.95055 1.20976 0.97242 0.94713 1.09313 1.20894 0.96937 0.93988 1.00520 1.20113 0.89624 0.98893 1.09732 1.18626 0.85481 0.94194 1.05322 1.43107 1.02798 1.06072 1.64965 1.21901 1.01112 0.80041 1.02748 0.92641 0.91415 0.92466 0.91435 0.88546 0.85628 0.83416 0.84958 0.91419 0.89864 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.58 9.85 71.24 0.70 -0.88 16 2 C -0.12 -5.86 6.96 42.13 0.29 -5.56 16 3 C 0.01 0.80 5.72 -19.98 -0.11 0.68 16 4 C -0.49 -27.92 8.85 23.28 0.21 -27.71 16 5 H 0.07 3.73 7.91 -2.91 -0.02 3.70 16 6 C 0.04 2.02 4.91 85.17 0.42 2.44 16 7 N -0.84 -47.38 10.23 21.80 0.22 -47.16 16 8 Si 0.97 41.45 29.60 68.60 2.03 43.48 16 9 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 12 C -0.14 -7.76 5.79 -20.04 -0.12 -7.88 16 13 C -0.04 -2.16 8.73 22.41 0.20 -1.96 16 14 C -0.20 -8.63 10.03 22.29 0.22 -8.41 16 15 C -0.10 -3.91 10.01 22.28 0.22 -3.69 16 16 C -0.16 -6.43 9.88 22.39 0.22 -6.21 16 17 C 0.07 3.46 6.77 38.87 0.26 3.72 16 18 N -0.48 -21.26 3.15 -521.49 -1.64 -22.90 16 19 C 0.08 2.51 10.75 127.77 1.37 3.88 16 20 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 21 H 0.07 2.18 6.88 -2.38 -0.02 2.16 16 22 H 0.06 2.34 7.91 -2.39 -0.02 2.32 16 23 H 0.28 14.32 8.30 -92.70 -0.77 13.55 16 24 H 0.10 5.27 6.28 -2.91 -0.02 5.25 16 25 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 26 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 27 H 0.13 4.20 7.96 -2.91 -0.02 4.17 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 2.18 7.95 -2.39 -0.02 2.16 16 30 H 0.09 2.28 6.84 -2.39 -0.02 2.26 16 Total: -1.00 -67.09 254.99 5.63 -61.46 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 1.13 Total: 16.70 kcal Atomic # 6 Polarization: -55.47 SS G_CDS: 3.89 Total: -51.58 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -1.42 Total: -70.06 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -67.09 5.63 -61.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082529845.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.392 kcal (2) G-P(sol) polarization free energy of solvation -67.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds