Wall clock time and date at job start Mon Mar 30 2020 02:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37914 * 120.01142 * 2 1 4 4 C 1.38631 * 120.62449 * 180.02562 * 3 2 1 5 5 C 1.37916 * 120.25243 * 359.97198 * 4 3 2 6 6 C 1.39152 * 119.68947 * 0.02562 * 5 4 3 7 7 C 1.47680 * 133.77652 * 179.67703 * 6 5 4 8 8 C 1.40890 * 126.92942 * 0.03118 * 7 6 5 9 9 H 1.07999 * 120.00406 * 359.97438 * 8 7 6 10 10 C 1.39743 * 119.99846 * 179.97438 * 8 7 6 11 11 N 1.31051 * 120.00434 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99772 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.46934 * 60.00093 * 12 10 8 14 14 H 1.48509 * 109.46862 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46915 * 299.99693 * 12 10 8 16 16 C 1.38901 * 106.13920 * 179.97438 * 7 6 5 17 17 N 1.35632 * 109.28891 * 0.36917 * 16 7 6 18 18 C 1.46504 * 124.68783 * 179.76310 * 17 16 7 19 19 C 1.38150 * 110.62510 * 359.75713 * 17 16 7 20 20 H 1.09006 * 109.47078 * 97.48363 * 1 2 3 21 21 H 1.09000 * 109.46886 * 217.47440 * 1 2 3 22 22 H 1.08994 * 109.47754 * 337.47673 * 1 2 3 23 23 H 1.08001 * 119.68796 * 359.97438 * 3 2 1 24 24 H 1.08002 * 119.87094 * 180.02562 * 4 3 2 25 25 H 1.07993 * 120.15975 * 179.97438 * 5 4 3 26 26 H 0.96992 * 120.00332 * 180.02562 * 11 10 8 27 27 H 1.08004 * 125.35211 * 180.12231 * 16 7 6 28 28 H 1.09001 * 109.46999 * 262.55492 * 18 17 16 29 29 H 1.08994 * 109.47394 * 22.55774 * 18 17 16 30 30 H 1.09000 * 109.47393 * 142.55831 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1942 0.0000 4 6 3.5830 1.2091 -0.0005 5 6 4.2905 0.0252 -0.0005 6 6 3.6065 -1.1865 -0.0004 7 6 4.0328 -2.6005 -0.0064 8 6 5.3554 -3.0858 -0.0136 9 1 6.1846 -2.3939 -0.0157 10 6 5.5944 -4.4627 -0.0181 11 7 4.5883 -5.3024 -0.0151 12 14 7.3481 -5.1062 -0.0284 13 1 8.0599 -4.6224 1.1817 14 1 7.3304 -6.5911 -0.0325 15 1 8.0479 -4.6166 -1.2433 16 6 2.8668 -3.3553 -0.0022 17 7 1.7950 -2.5241 -0.0025 18 6 0.3979 -2.9652 -0.0037 19 6 2.2028 -1.2042 -0.0015 20 1 -0.3633 -0.1339 -1.0190 21 1 -0.3633 -0.8156 0.6252 22 1 -0.3634 0.9492 0.3936 23 1 1.6519 2.1267 -0.0004 24 1 4.1108 2.1513 -0.0001 25 1 5.3704 0.0385 -0.0013 26 1 4.7542 -6.2581 -0.0178 27 1 2.8209 -4.4344 -0.0028 28 1 0.0121 -2.9471 -1.0230 29 1 0.3368 -3.9797 0.3900 30 1 -0.1947 -2.2968 0.6210 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082588066.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:25 Heat of formation + Delta-G solvation = 49.891986 kcal Electronic energy + Delta-G solvation = -13881.000295 eV Core-core repulsion = 11641.296533 eV Total energy + Delta-G solvation = -2239.703762 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.84034 -35.98477 -33.88677 -32.34089 -30.04481 -27.75704 -27.29345 -25.42980 -23.65596 -20.90929 -20.22397 -19.02755 -16.53338 -15.44386 -15.14590 -14.55159 -14.33924 -14.24352 -13.35856 -12.86354 -12.63437 -12.42155 -12.17261 -11.76444 -11.54247 -11.15413 -11.13761 -10.98863 -10.60733 -10.24759 -10.03786 -9.65331 -9.54722 -9.28913 -8.17946 -6.87893 -6.52058 -6.44762 -3.93781 2.24226 2.67591 3.14066 3.18244 3.22371 4.08778 4.19820 4.23591 4.80539 5.40559 5.57680 5.63329 5.69061 5.84138 5.91960 5.94666 5.98431 6.08930 6.32562 6.37911 6.60249 6.79151 6.91375 7.24436 7.27648 7.44153 7.58491 7.76924 7.89014 8.11747 8.41477 8.70125 8.99279 9.17413 9.24856 10.52954 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.038616 B = 0.009788 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.916625 B = 2859.866952 C = 3564.327473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.189 4.189 5 C -0.062 4.062 6 C -0.125 4.125 7 C 0.014 3.986 8 C -0.415 4.415 9 H 0.070 0.930 10 C 0.054 3.946 11 N -0.835 5.835 12 Si 0.917 3.083 13 H -0.270 1.270 14 H -0.282 1.282 15 H -0.270 1.270 16 C -0.091 4.091 17 N -0.480 5.480 18 C 0.082 3.918 19 C 0.091 3.909 20 H 0.055 0.945 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.273 0.727 27 H 0.191 0.809 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.418 4.464 0.134 7.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.128 4.128 3 C -0.137 4.137 4 C -0.209 4.209 5 C -0.080 4.080 6 C -0.132 4.132 7 C 0.009 3.991 8 C -0.448 4.448 9 H 0.088 0.912 10 C -0.156 4.156 11 N -0.466 5.466 12 Si 0.743 3.257 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.195 1.195 16 C -0.213 4.213 17 N -0.164 5.164 18 C -0.060 4.060 19 C -0.018 4.018 20 H 0.073 0.927 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.122 0.878 24 H 0.122 0.878 25 H 0.126 0.874 26 H 0.084 0.916 27 H 0.207 0.793 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.712 3.981 0.132 6.963 hybrid contribution 0.743 -0.375 -0.045 0.833 sum -4.969 3.605 0.087 6.140 Atomic orbital electron populations 1.20844 0.93056 1.01533 1.01002 1.18637 0.94100 0.90901 1.09129 1.20291 0.94008 0.95264 1.04120 1.20484 0.93826 0.96737 1.09898 1.20361 0.98547 0.90961 0.98154 1.19493 0.91851 0.94457 1.07373 1.18091 0.93054 0.86842 1.01104 1.18680 0.91618 0.91296 1.43171 0.91165 1.25634 0.98666 0.96747 0.94511 1.69438 1.31640 1.03366 1.42205 0.86218 0.82547 0.77542 0.79387 1.19493 1.20742 1.19502 1.23347 0.83118 0.96332 1.18545 1.43431 1.05383 1.03690 1.63900 1.21876 0.82410 1.00633 1.01119 1.18029 0.93634 0.84523 1.05659 0.92656 0.92080 0.92555 0.87780 0.87837 0.87444 0.91643 0.79293 0.93209 0.90965 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 9.23 36.00 0.33 -1.35 16 2 C -0.12 -2.50 5.90 -104.43 -0.62 -3.12 16 3 C -0.12 -2.23 9.64 -39.56 -0.38 -2.61 16 4 C -0.19 -3.73 10.04 -39.55 -0.40 -4.12 16 5 C -0.06 -1.39 10.09 -39.36 -0.40 -1.79 16 6 C -0.13 -3.20 6.33 -104.89 -0.66 -3.87 16 7 C 0.01 0.39 6.10 -104.79 -0.64 -0.25 16 8 C -0.41 -11.53 9.42 -38.02 -0.36 -11.89 16 9 H 0.07 1.88 7.84 -52.49 -0.41 1.47 16 10 C 0.05 1.41 5.49 -17.32 -0.10 1.32 16 11 N -0.84 -22.17 10.33 55.54 0.57 -21.59 16 12 Si 0.92 19.89 29.56 -169.99 -5.02 14.87 16 13 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 14 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 15 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 16 C -0.09 -2.41 10.29 -15.63 -0.16 -2.57 16 17 N -0.48 -11.08 3.15 -120.76 -0.38 -11.46 16 18 C 0.08 1.43 10.22 59.85 0.61 2.04 16 19 C 0.09 2.15 6.72 -83.90 -0.56 1.59 16 20 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.06 0.91 5.00 -51.93 -0.26 0.65 16 22 H 0.06 0.76 8.02 -51.93 -0.42 0.34 16 23 H 0.10 1.64 8.04 -52.49 -0.42 1.22 16 24 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 25 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 26 H 0.27 6.68 8.30 -40.82 -0.34 6.34 16 27 H 0.19 5.12 5.68 -52.48 -0.30 4.83 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 30 H 0.07 1.05 5.08 -51.93 -0.26 0.79 16 LS Contribution 252.28 15.07 3.80 3.80 Total: -1.00 -29.41 252.28 -7.68 -37.08 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -3.32 Total: 3.92 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: -3.33 Total: -26.62 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.19 Total: -33.05 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.41 -7.68 -37.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082588066.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.975 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds