Wall clock time and date at job start Mon Mar 30 2020 02:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37914 * 120.01142 * 2 1 4 4 C 1.38631 * 120.62449 * 180.02562 * 3 2 1 5 5 C 1.37916 * 120.25243 * 359.97198 * 4 3 2 6 6 C 1.39152 * 119.68947 * 0.02562 * 5 4 3 7 7 C 1.47680 * 133.77652 * 179.67703 * 6 5 4 8 8 C 1.40890 * 126.92942 * 0.03118 * 7 6 5 9 9 H 1.07999 * 120.00406 * 359.97438 * 8 7 6 10 10 C 1.39743 * 119.99846 * 179.97438 * 8 7 6 11 11 N 1.31051 * 120.00434 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99772 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.46934 * 60.00093 * 12 10 8 14 14 H 1.48509 * 109.46862 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46915 * 299.99693 * 12 10 8 16 16 C 1.38901 * 106.13920 * 179.97438 * 7 6 5 17 17 N 1.35632 * 109.28891 * 0.36917 * 16 7 6 18 18 C 1.46504 * 124.68783 * 179.76310 * 17 16 7 19 19 C 1.38150 * 110.62510 * 359.75713 * 17 16 7 20 20 H 1.09006 * 109.47078 * 97.48363 * 1 2 3 21 21 H 1.09000 * 109.46886 * 217.47440 * 1 2 3 22 22 H 1.08994 * 109.47754 * 337.47673 * 1 2 3 23 23 H 1.08001 * 119.68796 * 359.97438 * 3 2 1 24 24 H 1.08002 * 119.87094 * 180.02562 * 4 3 2 25 25 H 1.07993 * 120.15975 * 179.97438 * 5 4 3 26 26 H 0.96992 * 120.00332 * 180.02562 * 11 10 8 27 27 H 1.08004 * 125.35211 * 180.12231 * 16 7 6 28 28 H 1.09001 * 109.46999 * 262.55492 * 18 17 16 29 29 H 1.08994 * 109.47394 * 22.55774 * 18 17 16 30 30 H 1.09000 * 109.47393 * 142.55831 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1942 0.0000 4 6 3.5830 1.2091 -0.0005 5 6 4.2905 0.0252 -0.0005 6 6 3.6065 -1.1865 -0.0004 7 6 4.0328 -2.6005 -0.0064 8 6 5.3554 -3.0858 -0.0136 9 1 6.1846 -2.3939 -0.0157 10 6 5.5944 -4.4627 -0.0181 11 7 4.5883 -5.3024 -0.0151 12 14 7.3481 -5.1062 -0.0284 13 1 8.0599 -4.6224 1.1817 14 1 7.3304 -6.5911 -0.0325 15 1 8.0479 -4.6166 -1.2433 16 6 2.8668 -3.3553 -0.0022 17 7 1.7950 -2.5241 -0.0025 18 6 0.3979 -2.9652 -0.0037 19 6 2.2028 -1.2042 -0.0015 20 1 -0.3633 -0.1339 -1.0190 21 1 -0.3633 -0.8156 0.6252 22 1 -0.3634 0.9492 0.3936 23 1 1.6519 2.1267 -0.0004 24 1 4.1108 2.1513 -0.0001 25 1 5.3704 0.0385 -0.0013 26 1 4.7542 -6.2581 -0.0178 27 1 2.8209 -4.4344 -0.0028 28 1 0.0121 -2.9471 -1.0230 29 1 0.3368 -3.9797 0.3900 30 1 -0.1947 -2.2968 0.6210 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082588066.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:24 Heat of formation + Delta-G solvation = 34.114411 kcal Electronic energy + Delta-G solvation = -13881.684462 eV Core-core repulsion = 11641.296533 eV Total energy + Delta-G solvation = -2240.387929 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.55750 -37.62937 -35.73925 -34.00797 -31.65552 -29.57953 -28.87519 -27.07176 -25.34188 -22.60220 -21.90313 -20.86908 -18.37807 -17.27447 -16.85004 -16.18919 -15.93592 -15.83374 -14.89363 -14.45214 -14.10679 -13.99511 -13.71523 -13.32643 -13.16030 -12.98330 -12.86851 -12.60198 -12.17853 -11.88228 -11.67176 -11.49806 -11.27764 -11.15178 -9.92572 -8.62159 -8.39533 -8.35465 -5.95403 0.56232 1.02114 1.39881 1.41022 1.51567 2.28571 2.29107 2.58276 3.08681 3.64867 4.08052 4.12383 4.30550 4.40270 4.45588 4.59338 4.69114 4.72066 4.89663 4.92332 5.10914 5.22798 5.26200 5.33370 5.54806 5.74913 5.90242 5.99119 6.04419 6.28398 6.62153 6.79963 7.09431 7.20771 7.30500 8.59092 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.038616 B = 0.009788 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.916625 B = 2859.866952 C = 3564.327473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.175 4.175 5 C -0.091 4.091 6 C -0.170 4.170 7 C -0.032 4.032 8 C -0.455 4.455 9 H 0.062 0.938 10 C 0.010 3.990 11 N -0.860 5.860 12 Si 0.988 3.012 13 H -0.266 1.266 14 H -0.269 1.269 15 H -0.266 1.266 16 C -0.104 4.104 17 N -0.487 5.487 18 C 0.076 3.924 19 C 0.074 3.926 20 H 0.068 0.932 21 H 0.066 0.934 22 H 0.086 0.914 23 H 0.150 0.850 24 H 0.139 0.861 25 H 0.104 0.896 26 H 0.279 0.721 27 H 0.177 0.823 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.745 6.212 0.156 9.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.129 4.129 3 C -0.133 4.133 4 C -0.195 4.195 5 C -0.109 4.109 6 C -0.177 4.177 7 C -0.037 4.037 8 C -0.488 4.488 9 H 0.080 0.920 10 C -0.197 4.197 11 N -0.492 5.492 12 Si 0.810 3.190 13 H -0.191 1.191 14 H -0.194 1.194 15 H -0.191 1.191 16 C -0.227 4.227 17 N -0.172 5.172 18 C -0.065 4.065 19 C -0.035 4.035 20 H 0.087 0.913 21 H 0.085 0.915 22 H 0.105 0.895 23 H 0.168 0.832 24 H 0.157 0.843 25 H 0.122 0.878 26 H 0.089 0.911 27 H 0.194 0.806 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.082 5.745 0.153 9.120 hybrid contribution 1.044 -0.753 -0.053 1.288 sum -6.038 4.991 0.100 7.835 Atomic orbital electron populations 1.20901 0.89476 1.03533 1.02204 1.19237 0.96833 0.89717 1.07148 1.20874 0.93858 0.96694 1.01828 1.20939 0.94689 0.96850 1.07029 1.20556 0.98835 0.91482 1.00065 1.19828 0.93710 0.94431 1.09694 1.18574 0.93696 0.88939 1.02504 1.18925 0.91884 0.92380 1.45579 0.91954 1.26509 1.03101 0.96419 0.93645 1.69525 1.33455 1.03738 1.42441 0.85145 0.77097 0.77337 0.79375 1.19083 1.19359 1.19122 1.23137 0.84408 0.96138 1.19056 1.43576 1.06616 1.03255 1.63776 1.22185 0.79795 1.01683 1.02811 1.18488 0.93350 0.85789 1.05886 0.91349 0.91509 0.89527 0.83239 0.84272 0.87797 0.91088 0.80614 0.91583 0.90301 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.80 9.23 71.23 0.66 -2.14 16 2 C -0.13 -4.70 5.90 -19.74 -0.12 -4.82 16 3 C -0.11 -3.85 9.64 22.29 0.21 -3.63 16 4 C -0.18 -6.47 10.04 22.29 0.22 -6.24 16 5 C -0.09 -4.17 10.09 22.41 0.23 -3.94 16 6 C -0.17 -9.01 6.33 -20.04 -0.13 -9.14 16 7 C -0.03 -1.87 6.10 -19.97 -0.12 -2.00 16 8 C -0.45 -26.79 9.42 23.28 0.22 -26.57 16 9 H 0.06 3.57 7.84 -2.91 -0.02 3.55 16 10 C 0.01 0.54 5.49 85.17 0.47 1.01 16 11 N -0.86 -47.48 10.33 21.80 0.23 -47.25 16 12 Si 0.99 41.95 29.56 68.60 2.03 43.98 16 13 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 14 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 15 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 16 C -0.10 -5.76 10.29 84.26 0.87 -4.89 16 17 N -0.49 -22.77 3.15 -535.96 -1.69 -24.46 16 18 C 0.08 2.54 10.22 127.77 1.31 3.84 16 19 C 0.07 3.48 6.72 38.87 0.26 3.75 16 20 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 21 H 0.07 1.71 5.00 -2.39 -0.01 1.70 16 22 H 0.09 1.81 8.02 -2.39 -0.02 1.79 16 23 H 0.15 3.74 8.04 -2.91 -0.02 3.72 16 24 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 25 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 26 H 0.28 14.05 8.30 -92.71 -0.77 13.28 16 27 H 0.18 10.08 5.68 -2.91 -0.02 10.06 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.08 2.48 8.10 -2.39 -0.02 2.46 16 30 H 0.10 2.65 5.08 -2.39 -0.01 2.64 16 Total: -1.00 -67.48 252.28 5.78 -61.70 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 1.14 Total: 20.81 kcal Atomic # 6 Polarization: -58.86 SS G_CDS: 4.08 Total: -54.78 kcal Atomic # 7 Polarization: -70.25 SS G_CDS: -1.46 Total: -71.71 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -67.48 5.78 -61.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082588066.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.816 kcal (2) G-P(sol) polarization free energy of solvation -67.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds