Wall clock time and date at job start Mon Mar 30 2020 02:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.35641 * 125.35479 * 2 1 4 4 H 0.97002 * 124.69069 * 0.03966 * 3 2 1 5 5 C 1.38148 * 110.61898 * 180.02562 * 3 2 1 6 6 C 1.40383 * 107.89046 * 0.02562 * 5 3 2 7 7 C 1.39151 * 120.15751 * 179.97438 * 6 5 3 8 8 C 1.37920 * 119.69225 * 0.27761 * 7 6 5 9 9 C 1.38630 * 120.25398 * 359.37490 * 8 7 6 10 10 C 1.37905 * 120.61896 * 0.66463 * 9 8 7 11 11 C 1.50697 * 120.01590 * 179.67620 * 10 9 8 12 12 C 1.38892 * 125.35566 * 180.02562 * 2 1 3 13 13 C 1.40899 * 126.93022 * 359.97438 * 12 2 1 14 14 H 1.08001 * 119.99595 * 30.79427 * 13 12 2 15 15 C 1.39734 * 119.99950 * 210.79312 * 13 12 2 16 16 N 1.31053 * 120.00130 * 19.56618 * 15 13 12 17 17 Si 1.86799 * 119.99825 * 199.55596 * 15 13 12 18 18 H 1.48502 * 109.47244 * 60.00550 * 17 15 13 19 19 H 1.48502 * 109.47016 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47412 * 300.00282 * 17 15 13 21 21 H 1.08996 * 109.47590 * 95.09956 * 1 2 3 22 22 H 1.09001 * 109.46976 * 215.09989 * 1 2 3 23 23 H 1.09006 * 109.46951 * 335.09587 * 1 2 3 24 24 H 1.07996 * 120.15022 * 179.97438 * 7 6 5 25 25 H 1.08001 * 119.87013 * 179.70209 * 8 7 6 26 26 H 1.08000 * 119.68952 * 180.29411 * 9 8 7 27 27 H 1.09002 * 109.47016 * 269.97819 * 11 10 9 28 28 H 1.09000 * 109.47276 * 29.97727 * 11 10 9 29 29 H 1.08998 * 109.47527 * 149.97674 * 11 10 9 30 30 H 0.96997 * 120.00121 * 174.58856 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2918 1.1063 0.0000 4 1 1.9608 2.0180 0.0006 5 6 3.6279 0.7549 -0.0006 6 6 3.7051 -0.6468 -0.0016 7 6 4.9449 -1.2786 -0.0029 8 6 6.0976 -0.5213 0.0027 9 6 6.0239 0.8630 -0.0036 10 6 4.8014 1.5013 -0.0017 11 6 4.7372 3.0069 -0.0012 12 6 2.3107 -1.1328 -0.0005 13 6 1.8820 -2.4750 -0.0006 14 1 0.9521 -2.7447 -0.4792 15 6 2.6598 -3.4569 0.6184 16 7 3.5588 -3.1158 1.5089 17 14 2.4181 -5.2558 0.1769 18 1 2.6818 -5.4497 -1.2716 19 1 3.3582 -6.0902 0.9676 20 1 1.0219 -5.6577 0.4840 21 1 -0.3634 -0.0913 -1.0235 22 1 -0.3633 -0.8408 0.5909 23 1 -0.3633 0.9322 0.4328 24 1 5.0042 -2.3570 -0.0032 25 1 7.0614 -1.0087 0.0065 26 1 6.9323 1.4471 -0.0040 27 1 4.7228 3.3696 1.0266 28 1 5.6103 3.4080 -0.5158 29 1 3.8320 3.3321 -0.5139 30 1 4.0437 -3.8007 1.9956 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082588067.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:09 Heat of formation + Delta-G solvation = 35.802497 kcal Electronic energy + Delta-G solvation = -13986.715581 eV Core-core repulsion = 11746.400852 eV Total energy + Delta-G solvation = -2240.314728 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.71599 -35.89593 -33.69596 -31.69041 -29.97403 -29.02466 -26.44773 -25.64205 -24.16168 -20.69587 -19.74209 -18.97834 -16.47543 -15.94911 -14.83843 -14.47257 -14.03658 -13.60958 -13.16989 -12.72796 -12.62988 -12.31905 -11.75487 -11.65280 -11.59091 -11.37543 -11.11060 -10.84195 -10.69522 -10.19964 -10.12513 -10.02530 -9.36068 -8.89649 -8.02297 -6.83074 -6.57957 -6.23543 -3.94592 2.36257 2.84777 3.12579 3.19590 3.23600 4.02146 4.15186 4.51435 5.00025 5.49826 5.66829 5.74828 6.03589 6.10051 6.13329 6.22153 6.28039 6.36921 6.55392 6.65333 6.82526 6.95995 7.04922 7.20664 7.36532 7.43635 7.63317 7.81350 8.02418 8.28511 8.41575 8.73704 8.89057 9.17946 9.20346 10.51674 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.030746 B = 0.012031 C = 0.008968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.473910 B = 2326.742104 C = 3121.523676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.130 4.130 3 N -0.589 5.589 4 H 0.389 0.611 5 C 0.102 3.898 6 C -0.099 4.099 7 C -0.014 4.014 8 C -0.202 4.202 9 C -0.107 4.107 10 C -0.142 4.142 11 C -0.096 4.096 12 C 0.074 3.926 13 C -0.459 4.459 14 H 0.074 0.926 15 C 0.080 3.920 16 N -0.809 5.809 17 Si 0.898 3.102 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.270 1.270 21 H 0.040 0.960 22 H 0.066 0.934 23 H 0.035 0.965 24 H 0.118 0.882 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.789 4.935 -1.843 5.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.233 4.233 3 N -0.192 5.192 4 H 0.222 0.778 5 C -0.009 4.009 6 C -0.105 4.105 7 C -0.032 4.032 8 C -0.223 4.223 9 C -0.126 4.126 10 C -0.146 4.146 11 C -0.153 4.153 12 C 0.068 3.932 13 C -0.491 4.491 14 H 0.092 0.908 15 C -0.135 4.135 16 N -0.436 5.436 17 Si 0.723 3.277 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.194 1.194 21 H 0.059 0.941 22 H 0.084 0.916 23 H 0.054 0.946 24 H 0.136 0.864 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.854 4.891 -1.726 5.257 hybrid contribution -0.136 -0.446 -0.009 0.467 sum 0.718 4.445 -1.735 4.825 Atomic orbital electron populations 1.19760 0.90116 1.00317 0.99921 1.20208 0.91684 0.85487 1.25917 1.40850 1.03494 1.06774 1.68070 0.77757 1.18019 0.83884 0.94482 1.04478 1.19271 0.94454 0.90678 1.06096 1.20643 0.90339 0.99429 0.92832 1.20604 0.97330 0.93553 1.10785 1.20289 0.94915 0.94340 1.03093 1.18550 0.91047 0.93732 1.11240 1.20507 1.00978 0.93126 1.00679 1.17801 0.87691 0.91577 0.96087 1.18493 1.06403 0.90368 1.33867 0.90782 1.25686 0.93674 1.00446 0.93736 1.69937 1.20764 1.35282 1.17659 0.86551 0.78778 0.82731 0.79600 1.19191 1.20702 1.19448 0.94130 0.91557 0.94608 0.86416 0.88126 0.87977 0.92801 0.92555 0.93405 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.86 10.17 36.00 0.37 -0.49 16 2 C -0.13 -3.12 7.23 -80.67 -0.58 -3.70 16 3 N -0.59 -12.94 5.99 -6.15 -0.04 -12.97 16 4 H 0.39 7.10 8.75 -40.82 -0.36 6.74 16 5 C 0.10 2.40 6.90 -83.90 -0.58 1.82 16 6 C -0.10 -2.60 5.78 -104.90 -0.61 -3.21 16 7 C -0.01 -0.35 8.75 -39.36 -0.34 -0.69 16 8 C -0.20 -4.40 10.04 -39.55 -0.40 -4.79 16 9 C -0.11 -2.16 9.67 -39.56 -0.38 -2.55 16 10 C -0.14 -2.95 5.90 -104.43 -0.62 -3.56 16 11 C -0.10 -1.54 10.01 36.00 0.36 -1.18 16 12 C 0.07 2.02 5.72 -104.80 -0.60 1.42 16 13 C -0.46 -12.42 8.93 -38.02 -0.34 -12.75 16 14 H 0.07 1.93 7.92 -52.49 -0.42 1.51 16 15 C 0.08 2.06 4.88 -17.33 -0.08 1.98 16 16 N -0.81 -21.63 10.30 55.54 0.57 -21.06 16 17 Si 0.90 19.41 29.61 -169.99 -5.03 14.38 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.12 3.02 6.30 -52.49 -0.33 2.69 16 25 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 26 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 29 H 0.05 0.72 7.88 -51.93 -0.41 0.31 16 30 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 257.01 15.07 3.87 3.87 Total: -1.00 -29.02 257.01 -8.03 -37.05 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -3.60 Total: 6.44 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: -3.81 Total: -27.71 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.54 Total: -34.03 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.02 -8.03 -37.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082588067.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.852 kcal (2) G-P(sol) polarization free energy of solvation -29.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds