Wall clock time and date at job start Mon Mar 30 2020 02:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37917 * 119.87839 * 2 1 4 4 C 1.39150 * 119.69562 * 179.97438 * 3 2 1 5 5 C 1.47676 * 133.77627 * 179.97438 * 4 3 2 6 6 C 1.40891 * 126.93050 * 0.07906 * 5 4 3 7 7 H 1.07997 * 119.99724 * 6.59018 * 6 5 4 8 8 C 1.39740 * 119.99952 * 186.59195 * 6 5 4 9 9 N 1.31051 * 119.99877 * 10.96931 * 8 6 5 10 10 Si 1.86798 * 120.00036 * 190.97330 * 8 6 5 11 11 H 1.48500 * 109.47279 * 94.12800 * 10 8 6 12 12 H 1.48494 * 109.47315 * 214.13078 * 10 8 6 13 13 H 1.48503 * 109.46841 * 334.12668 * 10 8 6 14 14 C 1.38891 * 106.13731 * 180.02562 * 5 4 3 15 15 N 1.35641 * 109.29542 * 0.02562 * 14 5 4 16 16 H 0.97001 * 124.69205 * 180.02562 * 15 14 5 17 17 C 1.38153 * 110.61866 * 0.26239 * 15 14 5 18 18 C 1.39071 * 132.81335 * 180.43466 * 17 15 14 19 19 C 1.50703 * 120.01429 * 359.31315 * 18 17 15 20 20 C 1.37914 * 119.97272 * 179.61637 * 18 17 15 21 21 H 1.08998 * 109.46740 * 90.00278 * 1 2 3 22 22 H 1.09003 * 109.47087 * 210.00030 * 1 2 3 23 23 H 1.08997 * 109.47086 * 330.00109 * 1 2 3 24 24 H 1.07998 * 120.15043 * 359.95412 * 3 2 1 25 25 H 0.97003 * 119.99687 * 180.02562 * 9 8 6 26 26 H 1.08003 * 125.35059 * 180.02562 * 14 5 4 27 27 H 1.08997 * 109.47311 * 270.30843 * 19 18 17 28 28 H 1.08999 * 109.46906 * 30.30485 * 19 18 17 29 29 H 1.09002 * 109.47098 * 150.30479 * 19 18 17 30 30 H 1.08003 * 119.68382 * 179.73767 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1940 1.1959 0.0000 4 6 3.5855 1.1914 0.0005 5 6 4.6106 2.2544 0.0002 6 6 4.3875 3.6456 0.0008 7 1 3.3847 4.0316 0.1088 8 6 5.4638 4.5258 -0.1386 9 7 6.6431 4.0696 -0.4830 10 14 5.2217 6.3528 0.1663 11 1 5.5778 6.6715 1.5723 12 1 6.0932 7.1278 -0.7529 13 1 3.8016 6.7115 -0.0782 14 6 5.8390 1.6062 0.0005 15 7 5.6378 0.2648 0.0004 16 1 6.3447 -0.3995 0.0010 17 6 4.2870 -0.0246 -0.0059 18 6 3.5765 -1.2201 -0.0008 19 6 4.3131 -2.5349 -0.0011 20 6 2.1975 -1.2021 -0.0017 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.6545 2.1314 -0.0007 25 1 7.3903 4.6806 -0.5794 26 1 6.8027 2.0936 0.0008 27 1 4.4916 -2.8511 -1.0288 28 1 5.2668 -2.4171 0.5135 29 1 3.7139 -3.2872 0.5118 30 1 1.6504 -2.1333 -0.0021 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082588072.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:14 Heat of formation + Delta-G solvation = 30.191069 kcal Electronic energy + Delta-G solvation = -13674.359102 eV Core-core repulsion = 11433.801043 eV Total energy + Delta-G solvation = -2240.558058 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.74503 -36.25510 -33.62260 -32.42375 -30.30411 -28.25823 -26.47784 -25.18058 -24.71660 -20.60923 -19.85742 -19.21398 -16.87162 -15.85186 -15.08059 -14.53784 -13.85581 -13.66278 -13.19334 -12.74104 -12.60130 -12.51693 -12.25900 -12.01887 -11.47201 -11.34586 -11.17872 -11.04379 -10.70255 -10.29171 -10.00423 -9.74833 -9.55724 -9.27434 -8.19619 -6.85966 -6.56983 -6.48390 -3.93056 2.22429 2.63618 3.11155 3.19522 3.23852 4.11566 4.20708 4.59991 4.77471 5.50012 5.61008 5.63020 5.78705 5.90718 5.94136 6.01039 6.16270 6.23831 6.33946 6.36687 6.65891 6.82871 6.96310 7.22665 7.26486 7.40413 7.60697 7.75329 7.84264 8.11252 8.37133 8.71637 9.04671 9.16516 9.24813 10.51319 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.035992 B = 0.009211 C = 0.007400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.758552 B = 3039.085067 C = 3782.665369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.161 4.161 3 C -0.058 4.058 4 C -0.123 4.123 5 C 0.019 3.981 6 C -0.421 4.421 7 H 0.071 0.929 8 C 0.058 3.942 9 N -0.831 5.831 10 Si 0.913 3.087 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.266 1.266 14 C -0.093 4.093 15 N -0.590 5.590 16 H 0.392 0.608 17 C 0.088 3.912 18 C -0.125 4.125 19 C -0.099 4.099 20 C -0.112 4.112 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.107 0.893 25 H 0.272 0.728 26 H 0.182 0.818 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.846 -6.508 0.850 7.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.164 4.164 3 C -0.076 4.076 4 C -0.130 4.130 5 C 0.014 3.986 6 C -0.454 4.454 7 H 0.089 0.911 8 C -0.153 4.153 9 N -0.461 5.461 10 Si 0.739 3.261 11 H -0.200 1.200 12 H -0.207 1.207 13 H -0.190 1.190 14 C -0.217 4.217 15 N -0.191 5.191 16 H 0.225 0.775 17 C -0.023 4.023 18 C -0.128 4.128 19 C -0.156 4.156 20 C -0.131 4.131 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.125 0.875 25 H 0.083 0.917 26 H 0.199 0.801 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.474 -6.369 0.800 7.299 hybrid contribution 0.374 0.595 0.082 0.707 sum -3.100 -5.774 0.881 6.613 Atomic orbital electron populations 1.20522 0.92632 1.01164 1.00737 1.19261 0.94639 0.93000 1.09452 1.20221 0.92483 0.96339 0.98582 1.19462 0.92763 0.93509 1.07277 1.18064 0.88391 0.91511 1.00639 1.18700 0.94123 0.89556 1.42978 0.91106 1.25642 0.94868 1.00724 0.94038 1.69616 1.01460 1.36420 1.38632 0.86217 0.78983 0.82329 0.78597 1.19971 1.20714 1.19026 1.22921 1.00802 0.78977 1.18982 1.41459 1.03836 1.07826 1.65969 0.77473 1.18027 0.84475 0.94127 1.05654 1.18630 0.93205 0.91739 1.09242 1.20545 0.99264 0.94886 1.00899 1.20149 0.92156 0.96431 1.04359 0.92833 0.92965 0.92672 0.87477 0.91714 0.80120 0.92560 0.93125 0.92407 0.87746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.42 10.01 36.00 0.36 -1.06 16 2 C -0.16 -3.13 5.88 -104.60 -0.62 -3.75 16 3 C -0.06 -1.29 9.73 -39.36 -0.38 -1.68 16 4 C -0.12 -3.12 6.33 -104.90 -0.66 -3.78 16 5 C 0.02 0.52 6.07 -104.80 -0.64 -0.11 16 6 C -0.42 -11.64 9.40 -38.02 -0.36 -12.00 16 7 H 0.07 1.90 7.87 -52.49 -0.41 1.49 16 8 C 0.06 1.51 5.45 -17.32 -0.09 1.42 16 9 N -0.83 -22.00 10.57 55.54 0.59 -21.42 16 10 Si 0.91 19.80 29.57 -169.99 -5.03 14.77 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 14 C -0.09 -2.41 10.85 -15.63 -0.17 -2.58 16 15 N -0.59 -13.17 5.99 -9.81 -0.06 -13.23 16 16 H 0.39 7.25 8.75 -40.82 -0.36 6.89 16 17 C 0.09 2.03 6.90 -83.90 -0.58 1.45 16 18 C -0.12 -2.46 5.90 -104.43 -0.62 -3.07 16 19 C -0.10 -1.52 10.01 36.01 0.36 -1.16 16 20 C -0.11 -2.09 9.32 -39.56 -0.37 -2.46 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 23 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 24 H 0.11 2.30 8.06 -52.49 -0.42 1.87 16 25 H 0.27 6.64 8.30 -40.82 -0.34 6.30 16 26 H 0.18 4.79 5.95 -52.48 -0.31 4.47 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.74 7.88 -51.93 -0.41 0.33 16 29 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 30 H 0.10 1.65 8.06 -52.48 -0.42 1.22 16 LS Contribution 258.69 15.07 3.90 3.90 Total: -1.00 -28.92 258.69 -7.94 -36.86 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -3.58 Total: 7.91 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -3.76 Total: -28.78 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.53 Total: -34.65 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.92 -7.94 -36.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082588072.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.046 kcal (2) G-P(sol) polarization free energy of solvation -28.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds