Wall clock time and date at job start Mon Mar 30 2020 02:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00255 * 2 1 4 4 H 1.48503 * 109.47416 * 269.99835 * 3 2 1 5 5 H 1.48507 * 109.47343 * 29.99745 * 3 2 1 6 6 H 1.48499 * 109.47569 * 149.99417 * 3 2 1 7 7 C 1.37884 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00027 * 175.08269 * 7 2 1 9 9 C 1.50700 * 119.99493 * 355.36229 * 7 2 1 10 10 C 1.53002 * 115.54672 * 279.20521 * 9 7 2 11 11 S 1.81398 * 109.47466 * 294.73931 * 10 9 7 12 12 C 1.81399 * 102.99832 * 180.02562 * 11 10 9 13 13 C 1.53011 * 109.46887 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.46959 * 179.97438 * 13 12 11 15 15 N 1.46900 * 109.47006 * 180.02562 * 14 13 12 16 16 C 1.53001 * 117.49832 * 133.50573 * 9 7 2 17 17 C 1.53003 * 117.50133 * 64.88144 * 9 7 2 18 18 H 0.97000 * 119.99877 * 5.01063 * 1 2 3 19 19 H 1.08999 * 109.47450 * 54.74449 * 10 9 7 20 20 H 1.09006 * 109.46501 * 174.74066 * 10 9 7 21 21 H 1.08992 * 109.47589 * 300.00054 * 12 11 10 22 22 H 1.09002 * 109.47101 * 60.00282 * 12 11 10 23 23 H 1.09002 * 109.46988 * 300.00542 * 13 12 11 24 24 H 1.09002 * 109.46909 * 60.00300 * 13 12 11 25 25 H 1.08992 * 109.47757 * 300.00337 * 14 13 12 26 26 H 1.09002 * 109.46862 * 60.00520 * 14 13 12 27 27 H 1.00892 * 111.00151 * 56.04873 * 15 14 13 28 28 H 1.00899 * 111.00159 * 180.02562 * 15 14 13 29 29 H 1.08998 * 117.49625 * 359.97438 * 16 9 7 30 30 H 1.08998 * 117.49958 * 145.01931 * 16 9 7 31 31 H 1.09002 * 117.49568 * 214.97797 * 17 9 7 32 32 H 1.08998 * 117.49593 * 359.97438 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1958 -0.0796 9 6 1.2546 -2.4970 0.1066 10 6 0.8308 -2.9011 1.5202 11 16 2.3062 -3.2232 2.5251 12 6 1.6104 -3.6806 4.1366 13 6 2.7467 -3.9888 5.1139 14 6 2.1598 -4.3740 6.4733 15 7 3.2508 -4.6692 7.4117 16 6 1.6420 -3.6159 -0.8623 17 6 0.3190 -2.8694 -1.0452 18 1 -0.4850 0.8368 -0.0734 19 1 0.2532 -2.0941 1.9710 20 1 0.2198 -3.8025 1.4724 21 1 1.0131 -2.8545 4.5222 22 1 0.9801 -4.5627 4.0231 23 1 3.3437 -4.8151 4.7280 24 1 3.3773 -3.1070 5.2275 25 1 1.5632 -3.5474 6.8589 26 1 1.5290 -5.2556 6.3600 27 1 3.8862 -3.8889 7.4845 28 1 2.8888 -4.9269 8.3175 29 1 2.4389 -3.4096 -1.5767 30 1 1.5949 -4.6403 -0.4928 31 1 -0.5984 -3.4027 -0.7960 32 1 0.2455 -2.1719 -1.8795 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085316007.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:20 Heat of formation + Delta-G solvation = 4.320834 kcal Electronic energy + Delta-G solvation = -12220.372458 eV Core-core repulsion = 10114.136534 eV Total energy + Delta-G solvation = -2106.235924 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -36.53393 -35.95864 -31.91755 -31.49509 -27.66444 -25.41646 -24.78068 -21.34620 -21.07132 -19.13444 -16.27312 -16.04541 -15.41075 -15.12912 -14.59856 -14.19954 -13.84204 -13.36906 -12.99577 -12.72421 -11.94636 -11.89260 -11.53330 -11.04912 -10.93174 -10.85421 -10.75616 -10.44143 -10.12557 -9.52727 -9.22034 -8.87898 -8.87013 -8.42555 -7.96845 -6.76625 -6.00885 -4.06597 2.43033 3.31444 3.38275 3.44390 3.56492 4.42347 4.43741 4.97586 5.16489 5.27526 5.35955 5.41916 5.44887 5.70084 5.83938 6.00033 6.16947 6.23721 6.31327 6.42750 6.56417 6.76829 6.84552 6.94282 7.10063 7.24737 7.41554 7.53729 7.91504 8.43036 8.94287 9.58700 11.07316 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.031024 B = 0.007550 C = 0.006555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.312650 B = 3707.477441 C = 4270.379651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.071 3.929 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.482 4.482 8 H 0.062 0.938 9 C 0.053 3.947 10 C -0.024 4.024 11 S -0.248 6.248 12 C -0.100 4.100 13 C -0.098 4.098 14 C 0.064 3.936 15 N -0.853 5.853 16 C -0.204 4.204 17 C -0.148 4.148 18 H 0.259 0.741 19 H 0.080 0.920 20 H 0.047 0.953 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.027 0.973 26 H 0.071 0.929 27 H 0.341 0.659 28 H 0.339 0.661 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.509 -6.198 9.460 11.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.132 4.132 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.051 3.949 10 C -0.173 4.173 11 S -0.019 6.019 12 C -0.249 4.249 13 C -0.137 4.137 14 C -0.068 4.068 15 N -0.382 5.382 16 C -0.242 4.242 17 C -0.188 4.188 18 H 0.069 0.931 19 H 0.099 0.901 20 H 0.065 0.935 21 H 0.090 0.910 22 H 0.088 0.912 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.045 0.955 26 H 0.090 0.910 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.596 -6.585 8.751 11.255 hybrid contribution -1.471 1.710 0.845 2.409 sum 1.125 -4.875 9.596 10.822 Atomic orbital electron populations 1.69988 1.05885 1.26650 1.49627 1.24956 0.94793 0.98891 0.94539 0.86624 0.80198 0.83420 0.78078 1.20748 1.21276 1.19549 1.20378 0.92772 0.88353 1.50496 0.92033 1.18456 0.98561 0.93284 0.84549 1.23040 0.94176 1.01003 0.99054 1.86884 1.18634 1.89467 1.06964 1.23260 1.00868 1.03188 0.97577 1.21243 0.97140 1.02491 0.92814 1.21811 0.92812 0.99537 0.92624 1.58688 1.20105 1.45098 1.14314 1.22977 0.99410 0.95890 1.05899 1.22582 0.91304 1.01900 1.03025 0.93110 0.90136 0.93467 0.90971 0.91157 0.90436 0.91303 0.95504 0.91043 0.84658 0.84857 0.90333 0.91432 0.92023 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.95 12.85 55.43 0.71 -24.24 16 2 C 0.07 1.94 5.44 -17.82 -0.10 1.85 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.48 -13.23 8.47 -34.44 -0.29 -13.52 16 8 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 9 C 0.05 1.32 1.34 -155.66 -0.21 1.11 16 10 C -0.02 -0.55 5.80 37.16 0.22 -0.34 16 11 S -0.25 -5.09 21.43 -107.50 -2.30 -7.39 16 12 C -0.10 -1.56 5.94 37.16 0.22 -1.34 16 13 C -0.10 -1.32 5.48 -26.73 -0.15 -1.46 16 14 C 0.06 0.71 6.79 -3.83 -0.03 0.68 16 15 N -0.85 -8.39 9.62 -10.37 -0.10 -8.49 16 16 C -0.20 -4.56 9.96 -26.73 -0.27 -4.83 16 17 C -0.15 -3.49 9.39 -26.73 -0.25 -3.74 16 18 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 19 H 0.08 1.98 8.14 -51.92 -0.42 1.56 16 20 H 0.05 0.98 8.09 -51.92 -0.42 0.56 16 21 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 22 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 23 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.34 3.04 8.99 -39.30 -0.35 2.69 16 28 H 0.34 2.62 9.08 -39.29 -0.36 2.27 16 29 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.08 2.13 8.14 -51.93 -0.42 1.70 16 LS Contribution 285.24 15.07 4.30 4.30 Total: -1.00 -28.62 285.24 -8.59 -37.21 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.33 Total: 3.85 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -0.85 Total: -21.60 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.61 Total: -32.73 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -5.09 SS G_CDS: -2.30 Total: -7.39 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.62 -8.59 -37.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085316007.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.534 kcal (2) G-P(sol) polarization free energy of solvation -28.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds