Wall clock time and date at job start Mon Mar 30 2020 02:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00255 * 2 1 4 4 H 1.48503 * 109.47416 * 269.99835 * 3 2 1 5 5 H 1.48507 * 109.47343 * 29.99745 * 3 2 1 6 6 H 1.48499 * 109.47569 * 149.99417 * 3 2 1 7 7 C 1.37884 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00027 * 175.08269 * 7 2 1 9 9 C 1.50700 * 119.99493 * 355.36229 * 7 2 1 10 10 C 1.53002 * 115.54672 * 279.20521 * 9 7 2 11 11 S 1.81398 * 109.47466 * 294.73931 * 10 9 7 12 12 C 1.81399 * 102.99832 * 180.02562 * 11 10 9 13 13 C 1.53011 * 109.46887 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.46959 * 179.97438 * 13 12 11 15 15 N 1.46900 * 109.47006 * 180.02562 * 14 13 12 16 16 C 1.53001 * 117.49832 * 133.50573 * 9 7 2 17 17 C 1.53003 * 117.50133 * 64.88144 * 9 7 2 18 18 H 0.97000 * 119.99877 * 5.01063 * 1 2 3 19 19 H 1.08999 * 109.47450 * 54.74449 * 10 9 7 20 20 H 1.09006 * 109.46501 * 174.74066 * 10 9 7 21 21 H 1.08992 * 109.47589 * 300.00054 * 12 11 10 22 22 H 1.09002 * 109.47101 * 60.00282 * 12 11 10 23 23 H 1.09002 * 109.46988 * 300.00542 * 13 12 11 24 24 H 1.09002 * 109.46909 * 60.00300 * 13 12 11 25 25 H 1.08992 * 109.47757 * 300.00337 * 14 13 12 26 26 H 1.09002 * 109.46862 * 60.00520 * 14 13 12 27 27 H 1.00892 * 111.00151 * 56.04873 * 15 14 13 28 28 H 1.00899 * 111.00159 * 180.02562 * 15 14 13 29 29 H 1.08998 * 117.49625 * 359.97438 * 16 9 7 30 30 H 1.08998 * 117.49958 * 145.01931 * 16 9 7 31 31 H 1.09002 * 117.49568 * 214.97797 * 17 9 7 32 32 H 1.08998 * 117.49593 * 359.97438 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1958 -0.0796 9 6 1.2546 -2.4970 0.1066 10 6 0.8308 -2.9011 1.5202 11 16 2.3062 -3.2232 2.5251 12 6 1.6104 -3.6806 4.1366 13 6 2.7467 -3.9888 5.1139 14 6 2.1598 -4.3740 6.4733 15 7 3.2508 -4.6692 7.4117 16 6 1.6420 -3.6159 -0.8623 17 6 0.3190 -2.8694 -1.0452 18 1 -0.4850 0.8368 -0.0734 19 1 0.2532 -2.0941 1.9710 20 1 0.2198 -3.8025 1.4724 21 1 1.0131 -2.8545 4.5222 22 1 0.9801 -4.5627 4.0231 23 1 3.3437 -4.8151 4.7280 24 1 3.3773 -3.1070 5.2275 25 1 1.5632 -3.5474 6.8589 26 1 1.5290 -5.2556 6.3600 27 1 3.8862 -3.8889 7.4845 28 1 2.8888 -4.9269 8.3175 29 1 2.4389 -3.4096 -1.5767 30 1 1.5949 -4.6403 -0.4928 31 1 -0.5984 -3.4027 -0.7960 32 1 0.2455 -2.1719 -1.8795 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085316007.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:20 Heat of formation + Delta-G solvation = -12.951369 kcal Electronic energy + Delta-G solvation = -12221.121437 eV Core-core repulsion = 10114.136534 eV Total energy + Delta-G solvation = -2106.984903 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.41288 -36.90850 -34.00099 -32.51617 -29.46267 -27.41357 -25.91974 -22.91499 -22.39631 -21.04961 -18.17700 -16.98595 -16.89807 -16.60998 -16.19557 -15.67421 -15.33697 -15.02564 -14.50578 -14.06223 -13.70265 -13.37944 -12.98095 -12.83279 -12.77427 -12.46198 -12.25083 -11.96575 -11.86105 -11.40303 -10.96061 -10.70960 -10.43771 -9.84035 -9.63743 -8.40458 -8.09683 -6.20362 0.91782 1.39693 1.42228 1.52428 1.97668 2.43415 3.18246 3.53466 3.58494 3.91512 4.18515 4.19341 4.31544 4.40833 4.43841 4.60837 4.63305 4.70209 4.75758 4.94766 5.00479 5.10920 5.23031 5.23566 5.56456 5.64235 5.79094 6.19691 6.39435 6.59420 6.82869 7.46950 8.97800 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.031024 B = 0.007550 C = 0.006555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.312650 B = 3707.477441 C = 4270.379651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.029 3.971 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.495 4.495 8 H 0.046 0.954 9 C 0.024 3.976 10 C -0.013 4.013 11 S -0.286 6.286 12 C -0.083 4.083 13 C -0.091 4.091 14 C 0.072 3.928 15 N -0.859 5.859 16 C -0.183 4.183 17 C -0.150 4.150 18 H 0.260 0.740 19 H 0.052 0.948 20 H 0.064 0.936 21 H 0.074 0.926 22 H 0.086 0.914 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.034 0.966 26 H 0.078 0.922 27 H 0.346 0.654 28 H 0.353 0.647 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.698 -6.895 10.635 12.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.171 4.171 3 Si 0.770 3.230 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.532 4.532 8 H 0.064 0.936 9 C 0.022 3.978 10 C -0.162 4.162 11 S -0.057 6.057 12 C -0.232 4.232 13 C -0.130 4.130 14 C -0.061 4.061 15 N -0.391 5.391 16 C -0.220 4.220 17 C -0.189 4.189 18 H 0.069 0.931 19 H 0.071 0.929 20 H 0.082 0.918 21 H 0.092 0.908 22 H 0.105 0.895 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.159 0.841 28 H 0.167 0.833 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.790 -7.286 9.923 12.623 hybrid contribution -1.497 1.878 0.532 2.460 sum 1.293 -5.408 10.456 11.842 Atomic orbital electron populations 1.70072 1.06859 1.27245 1.50477 1.25571 0.95537 1.01595 0.94437 0.85762 0.78943 0.80076 0.78205 1.20126 1.20859 1.19654 1.20545 0.92257 0.90056 1.50392 0.93593 1.18593 0.99573 0.93479 0.86122 1.22749 0.94748 1.00602 0.98082 1.86903 1.18803 1.89704 1.10328 1.23313 1.01598 1.03777 0.94486 1.21182 0.96233 1.01925 0.93652 1.21683 0.93028 1.00062 0.91308 1.58647 1.19933 1.45426 1.15050 1.22961 0.98304 0.96336 1.04383 1.22498 0.92522 1.01980 1.01943 0.93121 0.92898 0.91755 0.90752 0.89542 0.91155 0.91956 0.94774 0.90401 0.84096 0.83319 0.90583 0.89093 0.90491 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.67 12.85 21.45 0.28 -51.40 16 2 C 0.03 1.58 5.44 84.66 0.46 2.04 16 3 Si 0.94 44.09 29.54 68.60 2.03 46.11 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.49 -27.39 8.47 25.60 0.22 -27.17 16 8 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16 9 C 0.02 1.17 1.34 -52.93 -0.07 1.10 16 10 C -0.01 -0.60 5.80 71.98 0.42 -0.18 16 11 S -0.29 -11.51 21.43 -56.49 -1.21 -12.72 16 12 C -0.08 -2.44 5.94 71.99 0.43 -2.01 16 13 C -0.09 -2.27 5.48 30.60 0.17 -2.10 16 14 C 0.07 1.39 6.79 86.30 0.59 1.98 16 15 N -0.86 -14.79 9.62 -186.73 -1.80 -16.58 16 16 C -0.18 -7.95 9.96 30.60 0.30 -7.64 16 17 C -0.15 -7.00 9.39 30.60 0.29 -6.71 16 18 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 19 H 0.05 2.62 8.14 -2.39 -0.02 2.60 16 20 H 0.06 2.60 8.09 -2.39 -0.02 2.58 16 21 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 22 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.35 5.42 8.99 -89.70 -0.81 4.61 16 28 H 0.35 4.53 9.08 -89.69 -0.81 3.72 16 29 H 0.08 3.31 8.14 -2.39 -0.02 3.30 16 30 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 31 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 32 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -60.18 285.24 1.56 -58.61 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -0.53 Total: 16.68 kcal Atomic # 6 Polarization: -43.50 SS G_CDS: 2.80 Total: -40.70 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -1.52 Total: -67.98 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -11.51 SS G_CDS: -1.21 Total: -12.72 kcal Total: -60.18 1.56 -58.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085316007.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.662 kcal (2) G-P(sol) polarization free energy of solvation -60.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds