Wall clock time and date at job start Mon Mar 30 2020 02:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36935 * 120.00061 * 2 1 4 4 H 1.08005 * 120.00300 * 202.02535 * 3 2 1 5 5 C 1.38818 * 119.99837 * 22.02911 * 3 2 1 6 6 N 1.31613 * 119.99967 * 11.25063 * 5 3 2 7 7 Si 1.86800 * 119.99583 * 191.25117 * 5 3 2 8 8 H 1.48497 * 109.47303 * 90.00134 * 7 5 3 9 9 H 1.48507 * 109.46801 * 209.99773 * 7 5 3 10 10 H 1.48499 * 109.47476 * 329.99510 * 7 5 3 11 11 C 1.46500 * 119.99966 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.45679 * 182.60247 * 11 2 1 13 13 C 1.54475 * 110.63021 * 305.28902 * 11 2 1 14 14 O 1.44427 * 104.80415 * 94.72168 * 13 11 2 15 15 C 1.44425 * 105.27460 * 40.51314 * 14 13 11 16 16 C 1.54476 * 104.80077 * 319.48918 * 15 14 13 17 17 H 1.09007 * 110.51192 * 265.32794 * 16 15 14 18 18 C 1.50702 * 110.51206 * 142.76095 * 16 15 14 19 19 O 1.20825 * 120.00398 * 241.45247 * 18 16 15 20 20 O 1.34237 * 120.00003 * 61.44717 * 18 16 15 21 21 H 1.09002 * 109.47306 * 274.68960 * 1 2 3 22 22 H 1.09002 * 109.47189 * 34.68630 * 1 2 3 23 23 H 1.08999 * 109.47403 * 154.69154 * 1 2 3 24 24 H 0.97001 * 119.99662 * 180.02562 * 6 5 3 25 25 H 1.09004 * 110.37008 * 335.89047 * 13 11 2 26 26 H 1.08999 * 110.37473 * 213.55437 * 13 11 2 27 27 H 1.09002 * 110.36818 * 78.31563 * 15 14 13 28 28 H 1.08994 * 110.37398 * 200.65881 * 15 14 13 29 29 H 0.96690 * 116.99854 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1706 1.2201 -0.3508 5 6 1.5315 2.3442 0.4509 6 7 0.3780 2.2722 1.0805 7 14 2.3372 4.0050 0.1641 8 1 1.8767 4.5610 -1.1335 9 1 1.9623 4.9330 1.2612 10 1 3.8128 3.8413 0.1368 11 6 2.1974 -1.2687 -0.0006 12 1 3.2715 -1.0886 0.0459 13 6 1.7463 -2.1582 1.1791 14 8 0.7289 -3.0197 0.6236 15 6 1.2173 -3.3916 -0.6837 16 6 1.8415 -2.0988 -1.2542 17 1 1.1187 -1.5662 -1.8724 18 6 3.0812 -2.4174 -2.0496 19 8 4.1501 -1.9699 -1.7075 20 8 2.9979 -3.1984 -3.1382 21 1 -0.3634 0.0840 1.0242 22 1 -0.3634 0.8450 -0.5848 23 1 -0.3634 -0.9290 -0.4393 24 1 -0.0541 3.0816 1.3952 25 1 1.3297 -1.5455 1.9786 26 1 2.5833 -2.7497 1.5501 27 1 1.9732 -4.1722 -0.5983 28 1 0.3944 -3.7263 -1.3151 29 1 3.8200 -3.3750 -3.6156 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085377251.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:28 Heat of formation + Delta-G solvation = -107.376551 kcal Electronic energy + Delta-G solvation = -15192.373588 eV Core-core repulsion = 12502.708136 eV Total energy + Delta-G solvation = -2689.665452 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.39387 -38.54342 -35.93779 -35.02123 -31.90724 -30.37748 -27.98500 -25.92752 -23.90227 -23.12473 -21.32453 -19.12705 -17.98999 -17.16404 -16.25460 -16.08745 -15.41708 -14.86356 -14.34721 -14.26688 -13.50741 -13.04268 -12.67628 -12.10389 -11.75973 -11.62962 -11.28453 -10.99389 -10.83769 -10.77332 -10.51056 -10.36528 -10.09852 -9.92158 -9.83937 -9.37934 -8.57226 -6.84568 -5.75085 -3.22900 2.44507 3.20854 3.38272 3.44654 3.46761 4.41446 4.48202 4.90053 5.18096 5.29069 5.41821 5.49380 5.69123 5.81159 5.97606 6.03026 6.16523 6.47642 6.60187 6.70083 6.86456 7.21401 7.40224 7.77023 7.82961 8.10057 8.35502 9.20651 9.81174 10.29537 11.29331 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.034741 B = 0.010504 C = 0.008815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.764146 B = 2665.031490 C = 3175.619341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.585 5.585 3 C -0.261 4.261 4 H 0.072 0.928 5 C 0.005 3.995 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.156 3.844 12 H 0.100 0.900 13 C 0.027 3.973 14 O -0.370 6.370 15 C 0.064 3.936 16 C -0.142 4.142 17 H 0.124 0.876 18 C 0.492 3.508 19 O -0.509 6.509 20 O -0.520 6.520 21 H 0.032 0.968 22 H 0.043 0.957 23 H 0.005 0.995 24 H 0.253 0.747 25 H 0.102 0.898 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.279 -10.268 -5.152 11.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.305 5.305 3 C -0.390 4.390 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.550 5.550 7 Si 0.738 3.262 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.044 3.956 12 H 0.118 0.882 13 C -0.052 4.052 14 O -0.288 6.288 15 C -0.013 4.013 16 C -0.164 4.164 17 H 0.142 0.858 18 C 0.334 3.666 19 O -0.396 6.396 20 O -0.332 6.332 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.023 0.977 24 H 0.064 0.936 25 H 0.121 0.879 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 1.880 -9.933 -4.646 11.126 hybrid contribution 1.100 0.924 -0.609 1.560 sum 2.981 -9.010 -5.255 10.848 Atomic orbital electron populations 1.20823 0.81934 0.95734 0.99805 1.44002 1.02087 0.99661 1.84740 1.19306 0.97957 0.85077 1.36682 0.91060 1.25037 0.97579 0.98577 0.98189 1.70089 1.17497 1.27152 1.40302 0.86202 0.78918 0.83771 0.77337 1.21460 1.21653 1.20391 1.21693 0.98601 0.86880 0.88383 0.88166 1.24216 0.90632 0.91677 0.98654 1.89128 1.43192 1.67495 1.29016 1.23141 0.98652 0.93844 0.85711 1.23293 0.93683 1.00003 0.99441 0.85829 1.23365 0.91210 0.73898 0.78128 1.90690 1.31017 1.49666 1.68204 1.84577 1.42853 1.65145 1.40629 0.94915 0.93805 0.97654 0.93646 0.87941 0.93104 0.92724 0.88635 0.73840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.97 7.92 59.84 0.47 4.45 15 2 N -0.58 -14.64 2.81 -171.69 -0.48 -15.12 15 3 C -0.26 -7.23 9.62 -15.06 -0.14 -7.37 15 4 H 0.07 1.98 7.84 -52.48 -0.41 1.56 15 5 C 0.00 0.13 5.14 -17.43 -0.09 0.04 15 6 N -0.91 -26.29 10.56 55.49 0.59 -25.71 15 7 Si 0.91 22.03 29.57 -169.99 -5.03 17.00 15 8 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 15 11 C 0.16 3.26 3.18 -66.37 -0.21 3.05 15 12 H 0.10 2.23 6.31 -51.93 -0.33 1.90 15 13 C 0.03 0.51 6.78 37.93 0.26 0.76 15 14 O -0.37 -6.76 11.03 -35.23 -0.39 -7.15 15 15 C 0.06 0.97 7.16 37.93 0.27 1.24 15 16 C -0.14 -2.48 2.77 -90.21 -0.25 -2.73 15 17 H 0.12 2.25 7.19 -51.93 -0.37 1.88 15 18 C 0.49 8.02 7.52 36.01 0.27 8.29 15 19 O -0.51 -9.82 16.06 -18.75 -0.30 -10.12 15 20 O -0.52 -6.37 13.40 -39.28 -0.53 -6.90 15 21 H 0.03 0.87 7.40 -51.93 -0.38 0.49 15 22 H 0.04 1.16 7.19 -51.93 -0.37 0.79 15 23 H 0.00 0.11 6.50 -51.93 -0.34 -0.23 15 24 H 0.25 7.13 8.31 -40.82 -0.34 6.79 15 25 H 0.10 2.14 8.02 -51.93 -0.42 1.72 15 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 27 H 0.05 0.74 7.86 -51.93 -0.41 0.33 15 28 H 0.10 1.24 8.14 -51.93 -0.42 0.82 15 29 H 0.40 3.07 9.10 45.56 0.41 3.49 15 LS Contribution 246.84 15.07 3.72 3.72 Total: -1.00 -31.61 246.84 -4.44 -36.05 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -2.60 Total: 0.49 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 0.58 Total: 7.74 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.10 Total: -40.83 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -1.22 Total: -24.17 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.61 -4.44 -36.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085377251.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.331 kcal (2) G-P(sol) polarization free energy of solvation -31.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds