Wall clock time and date at job start Mon Mar 30 2020 02:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36935 * 120.00061 * 2 1 4 4 H 1.08005 * 120.00300 * 202.02535 * 3 2 1 5 5 C 1.38818 * 119.99837 * 22.02911 * 3 2 1 6 6 N 1.31613 * 119.99967 * 11.25063 * 5 3 2 7 7 Si 1.86800 * 119.99583 * 191.25117 * 5 3 2 8 8 H 1.48497 * 109.47303 * 90.00134 * 7 5 3 9 9 H 1.48507 * 109.46801 * 209.99773 * 7 5 3 10 10 H 1.48499 * 109.47476 * 329.99510 * 7 5 3 11 11 C 1.46500 * 119.99966 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.45679 * 182.60247 * 11 2 1 13 13 C 1.54475 * 110.63021 * 305.28902 * 11 2 1 14 14 O 1.44427 * 104.80415 * 94.72168 * 13 11 2 15 15 C 1.44425 * 105.27460 * 40.51314 * 14 13 11 16 16 C 1.54476 * 104.80077 * 319.48918 * 15 14 13 17 17 H 1.09007 * 110.51192 * 265.32794 * 16 15 14 18 18 C 1.50702 * 110.51206 * 142.76095 * 16 15 14 19 19 O 1.20825 * 120.00398 * 241.45247 * 18 16 15 20 20 O 1.34237 * 120.00003 * 61.44717 * 18 16 15 21 21 H 1.09002 * 109.47306 * 274.68960 * 1 2 3 22 22 H 1.09002 * 109.47189 * 34.68630 * 1 2 3 23 23 H 1.08999 * 109.47403 * 154.69154 * 1 2 3 24 24 H 0.97001 * 119.99662 * 180.02562 * 6 5 3 25 25 H 1.09004 * 110.37008 * 335.89047 * 13 11 2 26 26 H 1.08999 * 110.37473 * 213.55437 * 13 11 2 27 27 H 1.09002 * 110.36818 * 78.31563 * 15 14 13 28 28 H 1.08994 * 110.37398 * 200.65881 * 15 14 13 29 29 H 0.96690 * 116.99854 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1706 1.2201 -0.3508 5 6 1.5315 2.3442 0.4509 6 7 0.3780 2.2722 1.0805 7 14 2.3372 4.0050 0.1641 8 1 1.8767 4.5610 -1.1335 9 1 1.9623 4.9330 1.2612 10 1 3.8128 3.8413 0.1368 11 6 2.1974 -1.2687 -0.0006 12 1 3.2715 -1.0886 0.0459 13 6 1.7463 -2.1582 1.1791 14 8 0.7289 -3.0197 0.6236 15 6 1.2173 -3.3916 -0.6837 16 6 1.8415 -2.0988 -1.2542 17 1 1.1187 -1.5662 -1.8724 18 6 3.0812 -2.4174 -2.0496 19 8 4.1501 -1.9699 -1.7075 20 8 2.9979 -3.1984 -3.1382 21 1 -0.3634 0.0840 1.0242 22 1 -0.3634 0.8450 -0.5848 23 1 -0.3634 -0.9290 -0.4393 24 1 -0.0541 3.0816 1.3952 25 1 1.3297 -1.5455 1.9786 26 1 2.5833 -2.7497 1.5501 27 1 1.9732 -4.1722 -0.5983 28 1 0.3944 -3.7263 -1.3151 29 1 3.8200 -3.3750 -3.6156 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085377251.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:27 Heat of formation + Delta-G solvation = -130.903095 kcal Electronic energy + Delta-G solvation = -15193.393775 eV Core-core repulsion = 12502.708136 eV Total energy + Delta-G solvation = -2690.685639 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.73690 -39.94039 -37.17211 -36.85396 -33.70304 -32.04510 -29.61341 -27.99077 -25.27956 -24.85174 -22.82011 -20.69407 -19.40706 -18.77500 -17.89016 -17.53171 -16.93441 -16.48616 -15.89758 -15.70602 -15.28984 -14.59286 -14.44781 -13.80651 -13.34613 -13.04636 -12.87085 -12.66861 -12.51780 -12.50056 -12.37362 -12.10794 -11.84875 -11.83135 -11.41827 -10.83905 -10.63837 -8.86999 -7.86544 -5.36434 1.16298 1.45507 1.45862 1.55537 2.01355 2.48431 3.05088 3.23890 3.51252 3.58674 3.94527 4.10429 4.22731 4.43841 4.54366 4.74835 4.79170 4.87750 4.95592 5.05535 5.32828 5.58456 5.61593 5.73776 5.80329 6.28073 6.99616 7.11174 7.80057 8.23501 9.16201 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.034741 B = 0.010504 C = 0.008815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.764146 B = 2665.031490 C = 3175.619341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.601 5.601 3 C -0.270 4.270 4 H 0.065 0.935 5 C -0.047 4.047 6 N -0.934 5.934 7 Si 0.970 3.030 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.272 1.272 11 C 0.146 3.854 12 H 0.084 0.916 13 C 0.037 3.963 14 O -0.382 6.382 15 C 0.068 3.932 16 C -0.138 4.138 17 H 0.117 0.883 18 C 0.504 3.496 19 O -0.544 6.544 20 O -0.502 6.502 21 H 0.004 0.996 22 H 0.017 0.983 23 H 0.033 0.967 24 H 0.250 0.750 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.124 0.876 29 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.794 -11.677 -6.309 13.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.322 5.322 3 C -0.400 4.400 4 H 0.083 0.917 5 C -0.242 4.242 6 N -0.580 5.580 7 Si 0.798 3.202 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.197 1.197 11 C 0.037 3.963 12 H 0.102 0.898 13 C -0.041 4.041 14 O -0.301 6.301 15 C -0.009 4.009 16 C -0.160 4.160 17 H 0.135 0.865 18 C 0.347 3.653 19 O -0.434 6.434 20 O -0.316 6.316 21 H 0.022 0.978 22 H 0.036 0.964 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.142 0.858 29 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 2.416 -11.401 -5.842 13.037 hybrid contribution 0.976 1.242 -0.333 1.614 sum 3.393 -10.160 -6.175 12.364 Atomic orbital electron populations 1.20476 0.82051 0.95882 0.97731 1.44124 1.02206 1.00548 1.85351 1.19520 0.97875 0.86527 1.36073 0.91681 1.25767 0.98304 1.01738 0.98412 1.70243 1.18736 1.27600 1.41456 0.85230 0.78265 0.79695 0.77012 1.21105 1.21733 1.19695 1.21819 0.97300 0.86118 0.91045 0.89812 1.23955 0.91405 0.91666 0.97108 1.89116 1.43306 1.67106 1.30530 1.23389 1.00285 0.92874 0.84344 1.23026 0.94317 1.00570 0.98074 0.86486 1.22971 0.89984 0.73730 0.78625 1.90696 1.32066 1.51252 1.69369 1.84494 1.44489 1.63517 1.39074 0.97768 0.96450 0.94830 0.94057 0.90528 0.90429 0.90253 0.85758 0.70974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.15 7.92 127.77 1.01 10.16 15 2 N -0.60 -30.40 2.81 -697.12 -1.96 -32.36 15 3 C -0.27 -15.17 9.62 84.04 0.81 -14.37 15 4 H 0.07 3.66 7.84 -2.91 -0.02 3.64 15 5 C -0.05 -2.64 5.14 84.86 0.44 -2.21 15 6 N -0.93 -55.48 10.56 21.65 0.23 -55.25 15 7 Si 0.97 45.76 29.57 68.60 2.03 47.78 15 8 H -0.28 -13.17 7.11 99.48 0.71 -12.46 15 9 H -0.29 -13.66 7.11 99.48 0.71 -12.96 15 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 15 11 C 0.15 6.05 3.18 46.01 0.15 6.19 15 12 H 0.08 3.74 6.31 -2.39 -0.02 3.72 15 13 C 0.04 1.37 6.78 72.48 0.49 1.87 15 14 O -0.38 -13.07 11.03 -148.98 -1.64 -14.71 15 15 C 0.07 1.81 7.16 72.48 0.52 2.33 15 16 C -0.14 -4.52 2.77 -10.53 -0.03 -4.55 15 17 H 0.12 4.03 7.19 -2.38 -0.02 4.01 15 18 C 0.50 15.15 7.52 71.24 0.54 15.68 15 19 O -0.54 -20.17 16.06 21.97 0.35 -19.81 15 20 O -0.50 -10.36 13.40 -51.49 -0.69 -11.05 15 21 H 0.00 0.22 7.40 -2.39 -0.02 0.20 15 22 H 0.02 0.92 7.19 -2.39 -0.02 0.90 15 23 H 0.03 1.44 6.50 -2.39 -0.02 1.43 15 24 H 0.25 14.39 8.31 -92.71 -0.77 13.62 15 25 H 0.08 3.23 8.02 -2.38 -0.02 3.22 15 26 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 27 H 0.08 1.78 7.86 -2.39 -0.02 1.76 15 28 H 0.12 2.66 8.14 -2.39 -0.02 2.64 15 29 H 0.43 4.79 9.10 -74.06 -0.67 4.11 15 Total: -1.00 -68.44 246.84 2.73 -65.71 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 0.49 Total: 4.57 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 3.92 Total: 15.12 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -1.73 Total: -87.61 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -1.98 Total: -45.58 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -68.44 2.73 -65.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085377251.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.190 kcal (2) G-P(sol) polarization free energy of solvation -68.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds