Wall clock time and date at job start Mon Mar 30 2020 02:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37818 * 119.81811 * 2 1 4 4 C 1.39473 * 119.65738 * 180.02562 * 3 2 1 5 5 C 1.46673 * 133.97520 * 179.97438 * 4 3 2 6 6 C 1.34301 * 107.04973 * 180.20258 * 5 4 3 7 7 N 1.37010 * 109.94078 * 359.62284 * 6 5 4 8 8 C 1.37203 * 125.08902 * 180.13255 * 7 6 5 9 9 H 1.08002 * 119.99668 * 149.92777 * 8 7 6 10 10 C 1.38852 * 120.00473 * 329.93622 * 8 7 6 11 11 N 1.31435 * 120.00569 * 169.06262 * 10 8 7 12 12 Si 1.86808 * 119.99774 * 349.05747 * 10 8 7 13 13 H 1.48504 * 109.46924 * 86.77564 * 12 10 8 14 14 H 1.48496 * 109.46929 * 206.77819 * 12 10 8 15 15 H 1.48498 * 109.46935 * 326.77414 * 12 10 8 16 16 C 1.38111 * 109.81657 * 0.38999 * 7 6 5 17 17 C 1.38923 * 133.42306 * 179.76979 * 16 7 6 18 18 C 1.50701 * 120.03573 * 359.97438 * 17 16 7 19 19 C 1.37933 * 119.92212 * 179.97438 * 17 16 7 20 20 H 1.09000 * 109.46797 * 270.04049 * 1 2 3 21 21 H 1.09000 * 109.47479 * 30.03975 * 1 2 3 22 22 H 1.08997 * 109.47059 * 150.04205 * 1 2 3 23 23 H 1.08001 * 120.17000 * 359.95958 * 3 2 1 24 24 H 1.07998 * 126.47491 * 359.93631 * 5 4 3 25 25 H 1.07998 * 125.02947 * 179.77469 * 6 5 4 26 26 H 0.96995 * 120.00747 * 179.97438 * 11 10 8 27 27 H 1.09000 * 109.46966 * 84.07467 * 18 17 16 28 28 H 1.09002 * 109.46992 * 204.07412 * 18 17 16 29 29 H 1.09000 * 109.47214 * 324.07319 * 18 17 16 30 30 H 1.07999 * 119.68063 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1923 1.1957 0.0000 4 6 3.5870 1.1918 -0.0005 5 6 4.6084 2.2445 -0.0012 6 6 5.8041 1.6330 -0.0060 7 7 5.6337 0.2735 -0.0001 8 6 6.6496 -0.6487 -0.0002 9 1 6.5070 -1.6091 0.4728 10 6 7.8610 -0.3473 -0.6081 11 7 8.9003 -1.1312 -0.4271 12 14 8.0136 1.1726 -1.6836 13 1 8.3517 2.3455 -0.8378 14 1 9.0858 0.9618 -2.6891 15 1 6.7246 1.4185 -2.3787 16 6 4.2862 -0.0295 0.0001 17 6 3.5759 -1.2234 0.0008 18 6 4.3115 -2.5387 0.0009 19 6 2.1967 -1.2035 0.0014 20 1 -0.3633 0.0007 1.0277 21 1 -0.3634 0.8896 -0.5144 22 1 -0.3633 -0.8903 -0.5132 23 1 1.6521 2.1309 -0.0007 24 1 4.4322 3.3100 -0.0023 25 1 6.7587 2.1381 -0.0112 26 1 9.7464 -0.9209 -0.8521 27 1 4.5818 -2.8037 1.0231 28 1 3.6696 -3.3139 -0.4178 29 1 5.2148 -2.4499 -0.6025 30 1 1.6485 -2.1339 0.0015 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107838215.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:46 Heat of formation + Delta-G solvation = 48.188637 kcal Electronic energy + Delta-G solvation = -13982.524930 eV Core-core repulsion = 11742.747305 eV Total energy + Delta-G solvation = -2239.777625 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.38756 -36.79360 -33.46410 -32.63255 -30.80641 -28.49875 -26.55155 -26.31220 -23.67190 -21.24808 -19.96504 -19.64113 -17.43538 -15.93197 -15.52126 -14.39109 -14.04380 -13.94893 -13.18469 -13.09803 -12.88237 -12.53361 -12.36302 -12.07777 -11.92261 -11.81689 -11.27433 -11.03420 -10.91665 -10.38118 -10.12694 -10.05098 -9.85985 -9.21843 -8.53480 -7.14226 -6.86001 -6.79296 -4.35380 1.97638 2.49432 2.93491 3.08940 3.17948 3.68473 3.88738 4.39480 4.62169 4.87851 5.47292 5.52595 5.73284 5.86071 6.00157 6.00625 6.04698 6.17147 6.31045 6.32823 6.41319 6.58560 6.75404 6.78874 6.92616 7.02800 7.32790 7.40755 7.47369 7.66516 7.85879 7.97571 8.26060 8.85134 9.17794 10.27446 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.040943 B = 0.010804 C = 0.008974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.706627 B = 2590.941783 C = 3119.498535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.134 4.134 3 C -0.087 4.087 4 C -0.117 4.117 5 C -0.249 4.249 6 C 0.002 3.998 7 N -0.297 5.297 8 C -0.347 4.347 9 H 0.127 0.873 10 C 0.067 3.933 11 N -0.847 5.847 12 Si 0.892 3.108 13 H -0.269 1.269 14 H -0.285 1.285 15 H -0.250 1.250 16 C 0.065 3.935 17 C -0.064 4.064 18 C -0.115 4.115 19 C -0.134 4.134 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.106 0.894 24 H 0.129 0.871 25 H 0.151 0.849 26 H 0.284 0.716 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.514 2.110 -0.464 8.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.135 4.135 3 C -0.105 4.105 4 C -0.122 4.122 5 C -0.274 4.274 6 C -0.130 4.130 7 N 0.039 4.961 8 C -0.474 4.474 9 H 0.144 0.856 10 C -0.143 4.143 11 N -0.478 5.478 12 Si 0.719 3.281 13 H -0.196 1.196 14 H -0.212 1.212 15 H -0.174 1.174 16 C -0.046 4.046 17 C -0.066 4.066 18 C -0.171 4.171 19 C -0.154 4.154 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.124 0.876 24 H 0.147 0.853 25 H 0.168 0.832 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.952 1.772 -0.503 8.162 hybrid contribution 0.469 0.736 -0.486 0.999 sum -7.483 2.508 -0.989 7.954 Atomic orbital electron populations 1.20573 0.92433 1.01407 1.00974 1.19311 0.94697 0.92984 1.06511 1.20078 0.91769 0.96400 1.02278 1.18969 0.92651 0.92621 1.07982 1.21166 0.90677 0.96922 1.18656 1.21722 0.98981 0.83936 1.08399 1.40339 1.03522 1.04085 1.48128 1.19615 0.90688 0.99245 1.37817 0.85599 1.25364 0.94672 0.98232 0.96043 1.69647 1.01188 1.37367 1.39615 0.86667 0.79383 0.81307 0.80784 1.19553 1.21184 1.17425 1.18152 0.83841 0.94299 1.08319 1.18803 0.92757 0.92650 1.02364 1.20893 1.00838 0.93390 1.02014 1.20274 0.92185 0.96660 1.06308 0.92529 0.92636 0.92604 0.87623 0.85313 0.83192 0.90555 0.92198 0.92986 0.89778 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 10.00 36.01 0.36 -0.97 16 2 C -0.13 -2.42 5.88 -104.60 -0.62 -3.04 16 3 C -0.09 -1.70 9.74 -39.28 -0.38 -2.08 16 4 C -0.12 -2.65 6.37 -105.09 -0.67 -3.32 16 5 C -0.25 -5.49 11.09 -37.57 -0.42 -5.90 16 6 C 0.00 0.05 8.26 -16.63 -0.14 -0.09 16 7 N -0.30 -7.57 2.69 -59.73 -0.16 -7.73 16 8 C -0.35 -9.25 8.94 -14.92 -0.13 -9.38 16 9 H 0.13 3.45 6.19 -52.49 -0.32 3.13 16 10 C 0.07 1.77 5.48 -17.49 -0.10 1.67 16 11 N -0.85 -22.86 13.96 55.49 0.77 -22.08 16 12 Si 0.89 20.43 24.73 -169.99 -4.20 16.23 16 13 H -0.27 -5.82 6.48 56.52 0.37 -5.46 16 14 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.25 -5.95 6.84 56.52 0.39 -5.56 16 16 C 0.07 1.58 6.70 -83.84 -0.56 1.01 16 17 C -0.06 -1.38 5.89 -104.48 -0.62 -2.00 16 18 C -0.11 -2.26 8.74 36.01 0.31 -1.94 16 19 C -0.13 -2.55 9.30 -39.52 -0.37 -2.91 16 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 22 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 23 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 24 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 25 H 0.15 3.38 4.65 -52.49 -0.24 3.14 16 26 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.05 0.86 8.04 -51.93 -0.42 0.44 16 29 H 0.08 1.84 6.01 -51.93 -0.31 1.53 16 30 H 0.11 1.77 8.05 -52.49 -0.42 1.34 16 LS Contribution 248.01 15.07 3.74 3.74 Total: -1.00 -27.97 248.01 -6.61 -34.58 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -3.44 Total: 4.22 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: -3.32 Total: -28.95 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 0.61 Total: -29.82 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.20 Total: 16.23 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -27.97 -6.61 -34.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107838215.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.768 kcal (2) G-P(sol) polarization free energy of solvation -27.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds