Wall clock time and date at job start Mon Mar 30 2020 03:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47355 * 2 1 4 4 S 1.81001 * 109.46996 * 119.99978 * 2 1 3 5 5 C 1.76192 * 100.00053 * 294.99815 * 4 2 1 6 6 H 1.08000 * 120.00436 * 0.02562 * 5 4 2 7 7 C 1.38805 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31634 * 119.99846 * 179.72260 * 7 5 4 9 9 Si 1.86795 * 120.00110 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47088 * 89.99559 * 9 7 5 11 11 H 1.48505 * 109.47015 * 209.99475 * 9 7 5 12 12 H 1.48498 * 109.47362 * 329.99901 * 9 7 5 13 13 C 1.53004 * 109.47175 * 239.99587 * 2 1 3 14 14 C 1.53119 * 109.52353 * 299.88050 * 13 2 1 15 15 C 1.53047 * 109.27239 * 182.50365 * 14 13 2 16 16 N 1.46845 * 109.57894 * 59.07844 * 15 14 13 17 17 C 1.46839 * 111.19735 * 298.29056 * 16 15 14 18 18 C 1.53045 * 109.52700 * 61.74307 * 17 16 15 19 19 H 1.08998 * 109.47147 * 59.99771 * 1 2 3 20 20 H 1.08999 * 109.47355 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46959 * 299.99979 * 1 2 3 22 22 H 0.97000 * 120.00210 * 180.02562 * 8 7 5 23 23 H 1.09007 * 109.51744 * 60.00300 * 13 2 1 24 24 H 1.09000 * 109.49903 * 302.37693 * 14 13 2 25 25 H 1.08997 * 109.50715 * 62.49348 * 14 13 2 26 26 H 1.08998 * 109.40602 * 299.05973 * 15 14 13 27 27 H 1.09003 * 109.45702 * 179.13211 * 15 14 13 28 28 H 1.00899 * 110.99875 * 174.18774 * 16 15 14 29 29 H 1.08999 * 109.46462 * 301.72313 * 17 16 15 30 30 H 1.09002 * 109.46439 * 181.75256 * 17 16 15 31 31 H 1.08995 * 109.50435 * 180.87985 * 18 17 16 32 32 H 1.09005 * 109.49989 * 60.75377 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1333 -0.8532 1.4779 5 6 1.5440 0.2422 2.7257 6 1 0.9913 1.1280 2.4495 7 6 1.7891 -0.0338 4.0637 8 7 1.3536 0.7875 4.9957 9 14 2.7445 -1.5662 4.5415 10 1 4.1939 -1.2483 4.5982 11 1 2.2888 -2.0382 5.8738 12 1 2.5103 -2.6302 3.5325 13 6 2.0400 -0.7214 -1.2492 14 6 1.5328 -2.1661 -1.2488 15 6 2.0970 -2.8999 -2.4676 16 7 3.5645 -2.8760 -2.4205 17 6 4.0750 -1.5000 -2.4684 18 6 3.5712 -0.7248 -1.2488 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.5252 0.5949 5.9307 23 1 1.6772 -0.2081 -2.1398 24 1 1.8624 -2.6672 -0.3387 25 1 0.4437 -2.1694 -1.2927 26 1 1.7548 -2.4071 -3.3776 27 1 1.7501 -3.9333 -2.4620 28 1 3.9592 -3.4343 -3.1626 29 1 3.7235 -1.0138 -3.3784 30 1 5.1648 -1.5166 -2.4633 31 1 3.9374 0.3008 -1.2928 32 1 3.9338 -1.2027 -0.3387 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108276696.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:40 Heat of formation + Delta-G solvation = -24.791670 kcal Electronic energy + Delta-G solvation = -12916.461068 eV Core-core repulsion = 10808.962731 eV Total energy + Delta-G solvation = -2107.498337 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.59054 -34.18390 -32.38165 -30.62753 -29.51081 -25.51007 -24.25087 -22.64728 -20.86934 -19.42527 -17.47021 -16.44211 -14.95921 -14.83147 -14.41598 -14.07065 -13.58547 -13.27327 -13.00176 -12.71810 -12.27361 -11.89691 -11.54963 -11.23207 -11.04801 -10.96463 -10.85775 -10.48494 -10.18436 -9.86589 -9.85135 -9.56352 -8.93541 -8.35281 -8.27633 -6.82139 -6.22000 -3.91554 3.07360 3.34741 3.50863 3.65004 4.33478 4.37363 4.83927 5.03930 5.07412 5.17223 5.29189 5.45074 5.56810 5.58570 5.76985 5.88369 5.95985 6.03249 6.05958 6.17300 6.32559 6.39165 6.43738 6.67725 6.73034 6.91414 6.95537 7.15938 7.48198 8.02038 8.51646 9.24869 10.87629 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.041360 B = 0.009488 C = 0.008647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.812019 B = 2950.249703 C = 3237.275101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.055 4.055 3 H 0.071 0.929 4 S -0.195 6.195 5 C -0.503 4.503 6 H 0.087 0.913 7 C 0.090 3.910 8 N -0.885 5.885 9 Si 0.859 3.141 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.237 1.237 13 C -0.064 4.064 14 C -0.117 4.117 15 C 0.061 3.939 16 N -0.688 5.688 17 C 0.061 3.939 18 C -0.118 4.118 19 H 0.039 0.961 20 H 0.059 0.941 21 H 0.065 0.935 22 H 0.269 0.731 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.022 0.978 27 H 0.069 0.931 28 H 0.335 0.665 29 H 0.022 0.978 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.266 -5.492 -14.299 15.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.184 4.184 3 H 0.090 0.910 4 S 0.034 5.966 5 C -0.650 4.650 6 H 0.105 0.895 7 C -0.117 4.117 8 N -0.523 5.523 9 Si 0.685 3.315 10 H -0.195 1.195 11 H -0.203 1.203 12 H -0.161 1.161 13 C -0.084 4.084 14 C -0.155 4.155 15 C -0.069 4.069 16 N -0.319 5.319 17 C -0.068 4.068 18 C -0.156 4.156 19 H 0.058 0.942 20 H 0.078 0.922 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.106 0.894 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.152 0.848 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.871 -6.437 -13.313 15.064 hybrid contribution -0.490 0.942 -0.544 1.193 sum 2.381 -5.496 -13.858 15.096 Atomic orbital electron populations 1.22030 0.94562 1.02043 1.01048 1.22863 0.98019 1.01196 0.96280 0.91049 1.84109 1.74863 1.37829 0.99832 1.22276 1.40732 1.10453 0.91548 0.89488 1.24789 0.94820 0.96684 0.95429 1.69948 1.45114 1.36553 1.00639 0.86707 0.80847 0.84497 0.79491 1.19507 1.20336 1.16090 1.20982 0.95481 0.95733 0.96163 1.21766 0.99667 0.95159 0.98876 1.21940 0.87606 1.00121 0.97206 1.60226 1.07223 1.12333 1.52140 1.21929 0.99219 0.88518 0.97147 1.21757 0.95148 0.99615 0.99053 0.94218 0.92170 0.91616 0.92154 0.92155 0.89390 0.91527 0.95968 0.91204 0.84759 0.95978 0.91170 0.91898 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.71 37.16 0.32 -2.22 16 2 C -0.05 -1.07 2.45 -26.73 -0.07 -1.14 16 3 H 0.07 1.46 8.14 -51.92 -0.42 1.04 16 4 S -0.19 -4.67 15.83 -107.50 -1.70 -6.37 16 5 C -0.50 -14.45 9.40 30.94 0.29 -14.16 16 6 H 0.09 2.67 7.36 -52.49 -0.39 2.29 16 7 C 0.09 2.65 5.50 -17.43 -0.10 2.56 16 8 N -0.89 -27.05 13.97 55.49 0.78 -26.28 16 9 Si 0.86 21.79 27.74 -169.99 -4.71 17.07 16 10 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 13 C -0.06 -1.03 2.08 -90.50 -0.19 -1.22 16 14 C -0.12 -1.80 4.76 -26.65 -0.13 -1.93 16 15 C 0.06 0.77 6.55 -3.83 -0.03 0.75 16 16 N -0.69 -8.84 6.85 -113.81 -0.78 -9.62 16 17 C 0.06 0.79 6.55 -3.83 -0.03 0.76 16 18 C -0.12 -1.84 5.18 -26.65 -0.14 -1.98 16 19 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.06 1.07 6.49 -51.93 -0.34 0.73 16 21 H 0.06 1.38 6.93 -51.93 -0.36 1.02 16 22 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.09 1.60 6.83 -51.93 -0.35 1.24 16 25 H 0.07 0.97 6.58 -51.93 -0.34 0.63 16 26 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.34 3.44 8.90 -39.29 -0.35 3.09 16 29 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.66 6.83 -51.93 -0.35 1.31 16 LS Contribution 259.88 15.07 3.92 3.92 Total: -1.00 -30.32 259.88 -7.58 -37.90 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.02 Total: 1.96 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -0.05 Total: -18.58 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.00 Total: -35.90 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.07 kcal Atomic # 16 Polarization: -4.67 SS G_CDS: -1.70 Total: -6.37 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.32 -7.58 -37.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108276696.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.107 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds