Wall clock time and date at job start Mon Mar 30 2020 03:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47355 * 2 1 4 4 S 1.81001 * 109.46996 * 119.99978 * 2 1 3 5 5 C 1.76192 * 100.00053 * 294.99815 * 4 2 1 6 6 H 1.08000 * 120.00436 * 0.02562 * 5 4 2 7 7 C 1.38805 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31634 * 119.99846 * 179.72260 * 7 5 4 9 9 Si 1.86795 * 120.00110 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47088 * 89.99559 * 9 7 5 11 11 H 1.48505 * 109.47015 * 209.99475 * 9 7 5 12 12 H 1.48498 * 109.47362 * 329.99901 * 9 7 5 13 13 C 1.53004 * 109.47175 * 239.99587 * 2 1 3 14 14 C 1.53119 * 109.52353 * 299.88050 * 13 2 1 15 15 C 1.53047 * 109.27239 * 182.50365 * 14 13 2 16 16 N 1.46845 * 109.57894 * 59.07844 * 15 14 13 17 17 C 1.46839 * 111.19735 * 298.29056 * 16 15 14 18 18 C 1.53045 * 109.52700 * 61.74307 * 17 16 15 19 19 H 1.08998 * 109.47147 * 59.99771 * 1 2 3 20 20 H 1.08999 * 109.47355 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46959 * 299.99979 * 1 2 3 22 22 H 0.97000 * 120.00210 * 180.02562 * 8 7 5 23 23 H 1.09007 * 109.51744 * 60.00300 * 13 2 1 24 24 H 1.09000 * 109.49903 * 302.37693 * 14 13 2 25 25 H 1.08997 * 109.50715 * 62.49348 * 14 13 2 26 26 H 1.08998 * 109.40602 * 299.05973 * 15 14 13 27 27 H 1.09003 * 109.45702 * 179.13211 * 15 14 13 28 28 H 1.00899 * 110.99875 * 174.18774 * 16 15 14 29 29 H 1.08999 * 109.46462 * 301.72313 * 17 16 15 30 30 H 1.09002 * 109.46439 * 181.75256 * 17 16 15 31 31 H 1.08995 * 109.50435 * 180.87985 * 18 17 16 32 32 H 1.09005 * 109.49989 * 60.75377 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1333 -0.8532 1.4779 5 6 1.5440 0.2422 2.7257 6 1 0.9913 1.1280 2.4495 7 6 1.7891 -0.0338 4.0637 8 7 1.3536 0.7875 4.9957 9 14 2.7445 -1.5662 4.5415 10 1 4.1939 -1.2483 4.5982 11 1 2.2888 -2.0382 5.8738 12 1 2.5103 -2.6302 3.5325 13 6 2.0400 -0.7214 -1.2492 14 6 1.5328 -2.1661 -1.2488 15 6 2.0970 -2.8999 -2.4676 16 7 3.5645 -2.8760 -2.4205 17 6 4.0750 -1.5000 -2.4684 18 6 3.5712 -0.7248 -1.2488 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.5252 0.5949 5.9307 23 1 1.6772 -0.2081 -2.1398 24 1 1.8624 -2.6672 -0.3387 25 1 0.4437 -2.1694 -1.2927 26 1 1.7548 -2.4071 -3.3776 27 1 1.7501 -3.9333 -2.4620 28 1 3.9592 -3.4343 -3.1626 29 1 3.7235 -1.0138 -3.3784 30 1 5.1648 -1.5166 -2.4633 31 1 3.9374 0.3008 -1.2928 32 1 3.9338 -1.2027 -0.3387 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108276696.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:39 Heat of formation + Delta-G solvation = -45.606491 kcal Electronic energy + Delta-G solvation = -12917.363667 eV Core-core repulsion = 10808.962731 eV Total energy + Delta-G solvation = -2108.400936 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.75454 -35.47070 -34.63740 -31.74066 -30.84864 -27.75236 -25.55921 -23.76163 -22.26205 -20.67635 -19.56106 -17.52849 -17.05470 -16.41281 -15.48043 -15.44357 -15.00722 -14.82056 -14.59415 -14.17674 -13.79025 -13.32195 -13.07353 -13.02046 -12.76112 -12.55681 -12.20322 -12.01643 -11.79750 -11.57137 -11.16572 -11.12237 -11.02130 -10.19043 -9.27010 -8.85076 -8.47425 -6.13320 1.14560 1.31904 1.48680 1.81656 2.26866 2.77419 2.90822 3.40991 3.77175 3.84794 4.06728 4.38259 4.40056 4.41907 4.53719 4.62896 4.75207 4.76685 4.81125 4.98104 5.03902 5.07828 5.11362 5.28374 5.38227 5.48891 5.64959 5.76034 6.16487 6.17751 6.65601 6.98304 8.65933 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.041360 B = 0.009488 C = 0.008647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.812019 B = 2950.249703 C = 3237.275101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.048 4.048 3 H 0.057 0.943 4 S -0.195 6.195 5 C -0.516 4.516 6 H 0.048 0.952 7 C 0.035 3.965 8 N -0.928 5.928 9 Si 0.922 3.078 10 H -0.265 1.265 11 H -0.266 1.266 12 H -0.229 1.229 13 C -0.058 4.058 14 C -0.117 4.117 15 C 0.066 3.934 16 N -0.703 5.703 17 C 0.068 3.932 18 C -0.120 4.120 19 H 0.074 0.926 20 H 0.067 0.933 21 H 0.028 0.972 22 H 0.274 0.726 23 H 0.087 0.913 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.353 0.647 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.858 -7.040 -16.618 18.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.177 4.177 3 H 0.076 0.924 4 S 0.033 5.967 5 C -0.664 4.664 6 H 0.067 0.933 7 C -0.168 4.168 8 N -0.567 5.567 9 Si 0.744 3.256 10 H -0.189 1.189 11 H -0.191 1.191 12 H -0.153 1.153 13 C -0.077 4.077 14 C -0.155 4.155 15 C -0.063 4.063 16 N -0.336 5.336 17 C -0.062 4.062 18 C -0.158 4.158 19 H 0.093 0.907 20 H 0.086 0.914 21 H 0.047 0.953 22 H 0.083 0.917 23 H 0.105 0.895 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.172 0.828 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.463 -7.990 -15.652 17.911 hybrid contribution -0.719 1.513 0.085 1.677 sum 2.744 -6.477 -15.567 17.082 Atomic orbital electron populations 1.21944 0.93651 1.02517 1.00937 1.23011 0.98777 1.00365 0.95558 0.92425 1.83867 1.75116 1.37184 1.00510 1.22519 1.40034 1.10320 0.93522 0.93330 1.25729 0.95846 0.99842 0.95421 1.70053 1.46720 1.38632 1.01247 0.85761 0.79433 0.80759 0.79655 1.18948 1.19104 1.15286 1.20997 0.95871 0.96119 0.94746 1.21736 1.00285 0.94472 0.98988 1.21880 0.87525 1.00682 0.96260 1.60156 1.07448 1.12574 1.53430 1.21845 0.99891 0.88347 0.96084 1.21736 0.94795 1.00035 0.99275 0.90676 0.91381 0.95252 0.91718 0.89492 0.92505 0.90747 0.94140 0.89913 0.82793 0.94184 0.90046 0.91724 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.71 71.98 0.63 -4.14 16 2 C -0.05 -1.86 2.45 30.60 0.07 -1.78 16 3 H 0.06 2.37 8.14 -2.40 -0.02 2.35 16 4 S -0.20 -9.41 15.83 -56.49 -0.89 -10.31 16 5 C -0.52 -30.71 9.40 67.96 0.64 -30.07 16 6 H 0.05 3.16 7.36 -2.91 -0.02 3.14 16 7 C 0.04 2.12 5.50 84.86 0.47 2.59 16 8 N -0.93 -58.31 13.97 21.65 0.30 -58.01 16 9 Si 0.92 45.41 27.74 68.60 1.90 47.31 16 10 H -0.26 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.23 -10.92 6.74 99.48 0.67 -10.25 16 13 C -0.06 -1.72 2.08 -10.71 -0.02 -1.74 16 14 C -0.12 -3.30 4.76 30.65 0.15 -3.15 16 15 C 0.07 1.43 6.55 86.33 0.57 1.99 16 16 N -0.70 -15.65 6.85 -514.00 -3.52 -19.17 16 17 C 0.07 1.51 6.55 86.33 0.57 2.07 16 18 C -0.12 -3.53 5.18 30.65 0.16 -3.37 16 19 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 20 H 0.07 2.34 6.49 -2.39 -0.02 2.32 16 21 H 0.03 1.25 6.93 -2.39 -0.02 1.23 16 22 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 23 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 24 H 0.06 1.98 6.83 -2.39 -0.02 1.96 16 25 H 0.07 1.96 6.58 -2.39 -0.02 1.95 16 26 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.35 5.89 8.90 -89.69 -0.80 5.09 16 29 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 2.13 6.83 -2.38 -0.02 2.11 16 Total: -1.00 -66.92 259.88 1.27 -65.65 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.26 Total: 12.14 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 3.22 Total: -37.61 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -3.22 Total: -77.18 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.90 Total: 47.31 kcal Atomic # 16 Polarization: -9.41 SS G_CDS: -0.89 Total: -10.31 kcal Total: -66.92 1.27 -65.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108276696.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.039 kcal (2) G-P(sol) polarization free energy of solvation -66.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds