Wall clock time and date at job start Mon Mar 30 2020 02:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30912 * 1 3 3 Si 1.86795 * 120.00058 * 2 1 4 4 H 1.48501 * 109.47343 * 269.99882 * 3 2 1 5 5 H 1.48508 * 109.47471 * 29.99683 * 3 2 1 6 6 H 1.48500 * 109.47490 * 149.99750 * 3 2 1 7 7 C 1.39858 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00610 * 195.19228 * 7 2 1 9 9 C 1.41148 * 119.99827 * 15.19529 * 7 2 1 10 10 C 1.40881 * 120.15381 * 28.33957 * 9 7 2 11 11 C 1.36343 * 119.83658 * 179.97438 * 10 9 7 12 12 C 1.39566 * 120.15860 * 359.97438 * 11 10 9 13 13 N 1.38861 * 119.84158 * 179.97438 * 12 11 10 14 14 C 1.48232 * 110.99786 * 125.98654 * 13 12 11 15 15 C 1.51115 * 105.43873 * 144.85788 * 14 13 12 16 16 C 1.31125 * 109.36845 * 343.13039 * 15 14 13 17 17 C 1.48225 * 110.99897 * 239.62373 * 13 12 11 18 18 C 1.39573 * 120.31748 * 0.27250 * 12 11 10 19 19 C 1.36342 * 120.15502 * 359.48575 * 18 12 11 20 20 H 0.97000 * 119.99386 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.08373 * 359.97438 * 10 9 7 22 22 H 1.07997 * 119.91920 * 179.97438 * 11 10 9 23 23 H 1.08996 * 110.26206 * 263.86694 * 14 13 12 24 24 H 1.09000 * 110.26820 * 25.83790 * 14 13 12 25 25 H 1.08000 * 125.27689 * 163.07255 * 15 14 13 26 26 H 1.08007 * 125.24213 * 179.97438 * 16 15 14 27 27 H 1.09000 * 110.27118 * 334.06786 * 17 13 12 28 28 H 1.08995 * 110.26824 * 96.03738 * 17 13 12 29 29 H 1.07994 * 119.91912 * 179.72332 * 18 12 11 30 30 H 1.08002 * 120.07634 * 180.27871 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4907 2.0464 -1.4001 5 1 1.4406 2.6528 0.7000 6 1 3.5407 1.4402 0.7001 7 6 2.0084 -1.2112 0.0005 8 1 3.0601 -1.2276 0.2456 9 6 1.3396 -2.4123 -0.3193 10 6 0.2233 -2.3936 -1.1785 11 6 -0.4175 -3.5577 -1.4836 12 6 0.0303 -4.7659 -0.9473 13 7 -0.6277 -5.9476 -1.2620 14 6 0.3178 -6.9554 -1.7984 15 6 -0.1835 -8.2876 -1.2909 16 6 -1.0157 -8.0891 -0.2972 17 6 -1.1503 -6.6059 -0.0411 18 6 1.1324 -4.7914 -0.0913 19 6 1.7859 -3.6356 0.2185 20 1 -0.4849 0.8401 -0.0004 21 1 -0.1240 -1.4594 -1.5945 22 1 -1.2737 -3.5449 -2.1418 23 1 0.3088 -6.9390 -2.8882 24 1 1.3245 -6.7642 -1.4267 25 1 0.0992 -9.2521 -1.6862 26 1 -1.5250 -8.8660 0.2538 27 1 -0.5574 -6.3174 0.8268 28 1 -2.1965 -6.3412 0.1121 29 1 1.4707 -5.7294 0.3235 30 1 2.6413 -3.6574 0.8774 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118879204.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:50 Heat of formation + Delta-G solvation = 40.390872 kcal Electronic energy + Delta-G solvation = -13601.005104 eV Core-core repulsion = 11360.889342 eV Total energy + Delta-G solvation = -2240.115761 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.06976 -38.68867 -35.58609 -33.20249 -31.49962 -30.13651 -29.26063 -26.52563 -23.90145 -22.69702 -21.49483 -20.16525 -19.29236 -17.98633 -17.05754 -16.56554 -15.68133 -15.34768 -14.83311 -14.53205 -14.08419 -13.96201 -13.71045 -13.35771 -13.13699 -13.05640 -12.76314 -12.44793 -12.23965 -12.08804 -11.64512 -11.53108 -11.05518 -10.40261 -9.52362 -9.18163 -9.14867 -8.66147 -6.37213 0.81044 1.08059 1.30120 1.38558 1.49269 1.52189 2.20205 2.66791 3.26254 3.61533 3.86958 4.03556 4.29315 4.40521 4.55729 4.58882 4.63579 4.74628 4.93431 4.99282 5.10791 5.27171 5.30262 5.43096 5.57373 5.66887 5.72733 5.97066 6.06214 6.07039 6.28673 6.54060 6.71860 6.88692 7.05044 8.31774 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.077964 B = 0.006644 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.053200 B = 4213.271085 C = 4327.222473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.034 3.966 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.496 4.496 8 H 0.078 0.922 9 C 0.083 3.917 10 C -0.179 4.179 11 C -0.077 4.077 12 C -0.056 4.056 13 N -0.466 5.466 14 C 0.045 3.955 15 C -0.165 4.165 16 C -0.167 4.167 17 C 0.046 3.954 18 C -0.110 4.110 19 C -0.230 4.230 20 H 0.289 0.711 21 H 0.102 0.898 22 H 0.104 0.896 23 H 0.082 0.918 24 H 0.050 0.950 25 H 0.166 0.834 26 H 0.164 0.836 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.173 -8.712 -0.899 8.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.526 4.526 8 H 0.096 0.904 9 C 0.081 3.919 10 C -0.199 4.199 11 C -0.096 4.096 12 C -0.151 4.151 13 N -0.186 5.186 14 C -0.081 4.081 15 C -0.183 4.183 16 C -0.186 4.186 17 C -0.080 4.080 18 C -0.130 4.130 19 C -0.250 4.250 20 H 0.100 0.900 21 H 0.120 0.880 22 H 0.122 0.878 23 H 0.100 0.900 24 H 0.068 0.932 25 H 0.183 0.817 26 H 0.181 0.819 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.818 -8.397 -1.272 8.532 hybrid contribution 0.863 0.787 0.686 1.355 sum 0.045 -7.611 -0.586 7.633 Atomic orbital electron populations 1.69908 1.09028 1.30698 1.35668 1.26795 0.95546 1.04612 0.91154 0.85141 0.78973 0.75650 0.79560 1.18612 1.19224 1.18138 1.19807 0.97517 0.92126 1.43107 0.90397 1.18020 0.91840 0.93112 0.88963 1.20909 1.00403 0.96693 1.01941 1.20446 0.98534 0.91648 0.99002 1.18391 0.99136 0.90963 1.06597 1.62770 1.30268 1.01428 1.24168 1.22286 0.94855 0.89915 1.01028 1.23813 0.98373 0.98160 0.97988 1.23788 0.99936 0.95771 0.99060 1.22264 1.00896 0.92827 0.92057 1.20900 0.96567 0.97065 0.98430 1.20849 1.04377 0.93352 1.06382 0.90030 0.87999 0.87763 0.89963 0.93191 0.81664 0.81861 0.93639 0.90324 0.87471 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.81 11.05 21.81 0.24 -43.57 16 2 C 0.03 1.71 5.16 85.22 0.44 2.15 16 3 Si 0.99 38.25 29.58 68.60 2.03 40.28 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 5 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 6 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 7 C -0.50 -26.99 9.03 23.38 0.21 -26.78 16 8 H 0.08 4.07 7.89 -2.91 -0.02 4.04 16 9 C 0.08 4.57 5.54 -21.27 -0.12 4.45 16 10 C -0.18 -9.72 8.60 22.47 0.19 -9.53 16 11 C -0.08 -3.81 9.90 22.15 0.22 -3.59 16 12 C -0.06 -2.53 4.92 38.67 0.19 -2.34 16 13 N -0.47 -18.01 5.56 -694.93 -3.86 -21.87 16 14 C 0.05 1.47 6.42 85.43 0.55 2.02 16 15 C -0.17 -4.06 10.96 25.65 0.28 -3.78 16 16 C -0.17 -4.19 10.95 25.65 0.28 -3.91 16 17 C 0.05 1.53 6.45 85.43 0.55 2.08 16 18 C -0.11 -4.99 7.58 22.15 0.17 -4.82 16 19 C -0.23 -11.55 9.74 22.47 0.22 -11.33 16 20 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 21 H 0.10 5.73 6.34 -2.91 -0.02 5.71 16 22 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 23 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 24 H 0.05 1.71 6.33 -2.39 -0.02 1.70 16 25 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 26 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 27 H 0.05 1.63 6.67 -2.39 -0.02 1.62 16 28 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.11 4.33 7.01 -2.91 -0.02 4.31 16 30 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -59.78 253.81 2.72 -57.06 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 1.13 Total: 23.46 kcal Atomic # 6 Polarization: -58.55 SS G_CDS: 3.18 Total: -55.37 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: -3.62 Total: -65.43 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -59.78 2.72 -57.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118879204.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.452 kcal (2) G-P(sol) polarization free energy of solvation -59.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds