Wall clock time and date at job start Mon Mar 30 2020 03:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47366 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47271 * 119.99753 * 8 6 4 11 11 H 1.48496 * 109.47166 * 239.99582 * 8 6 4 12 12 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 13 13 C 1.46465 * 111.00514 * 306.04392 * 12 2 1 14 14 C 1.53246 * 109.86479 * 197.76694 * 13 12 2 15 15 S 1.81898 * 108.50341 * 297.99790 * 14 13 12 16 16 C 1.81896 * 101.91636 * 51.30593 * 15 14 13 17 17 H 1.08997 * 109.63508 * 68.39568 * 16 15 14 18 18 C 1.52999 * 109.63427 * 188.79098 * 16 15 14 19 19 C 1.46469 * 111.00179 * 72.02785 * 12 2 1 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 22 22 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 23 23 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 24 24 H 1.09000 * 109.40653 * 317.89151 * 13 12 2 25 25 H 1.09003 * 109.40703 * 77.72634 * 13 12 2 26 26 H 1.09003 * 109.63078 * 57.70037 * 14 13 12 27 27 H 1.08998 * 109.63477 * 178.28989 * 14 13 12 28 28 H 1.09007 * 109.47033 * 59.99481 * 18 16 15 29 29 H 1.08996 * 109.47369 * 179.97438 * 18 16 15 30 30 H 1.08996 * 109.47048 * 300.00327 * 18 16 15 31 31 H 1.08999 * 109.40310 * 282.35185 * 19 12 2 32 32 H 1.09004 * 109.40552 * 42.10826 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.1455 -2.2877 3.6037 10 1 3.1467 -0.1875 4.8165 11 1 1.1661 -1.5867 4.8160 12 7 2.0196 -0.6925 -1.1994 13 6 1.4360 -2.0315 -1.3075 14 6 2.2638 -2.8837 -2.2755 15 16 2.2080 -2.1081 -3.9199 16 6 2.6822 -0.3931 -3.5426 17 1 3.7281 -0.3610 -3.2375 18 6 2.4815 0.4804 -4.7826 19 6 1.7967 0.1162 -2.4002 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3635 0.5138 -0.8899 23 1 0.7095 1.1617 3.4844 24 1 1.4282 -2.5036 -0.3251 25 1 0.4144 -1.9524 -1.6793 26 1 3.2960 -2.9333 -1.9288 27 1 1.8441 -3.8882 -2.3299 28 1 1.4335 0.4520 -5.0813 29 1 2.7659 1.5074 -4.5535 30 1 3.1014 0.1042 -5.5963 31 1 0.7496 0.0462 -2.6947 32 1 2.0430 1.1564 -2.1871 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122514161.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:44 Heat of formation + Delta-G solvation = -4.559395 kcal Electronic energy + Delta-G solvation = -13177.252632 eV Core-core repulsion = 11070.631632 eV Total energy + Delta-G solvation = -2106.621000 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.90229 -33.85715 -32.58371 -30.58218 -28.03842 -25.48425 -24.89907 -22.31856 -21.21845 -19.29655 -16.33645 -16.24216 -15.16972 -14.69835 -14.14736 -14.03401 -13.56345 -13.29432 -12.72653 -12.38269 -11.74698 -11.64740 -11.62995 -11.46977 -11.08922 -10.88431 -10.72450 -10.52818 -10.27192 -10.04098 -9.94525 -9.26049 -8.93388 -8.43910 -7.43446 -7.21282 -6.06386 -4.10514 2.16099 2.90145 3.26636 3.34907 3.39021 4.35426 4.69982 5.15144 5.25572 5.31833 5.51255 5.52678 5.72904 5.79039 5.86377 5.92419 6.14935 6.17444 6.34110 6.46841 6.52690 6.71242 6.81069 7.05986 7.38122 7.63605 7.77960 8.06041 8.29586 8.51040 8.95382 9.54918 11.00633 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.047378 B = 0.008671 C = 0.007968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.851255 B = 3228.478881 C = 3513.341794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.216 3.784 3 H 0.040 0.960 4 C -0.501 4.501 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.545 5.545 13 C 0.064 3.936 14 C -0.068 4.068 15 S -0.302 6.302 16 C -0.039 4.039 17 H 0.092 0.908 18 C -0.130 4.130 19 C 0.061 3.939 20 H 0.030 0.970 21 H 0.089 0.911 22 H 0.006 0.994 23 H 0.260 0.740 24 H 0.096 0.904 25 H 0.034 0.966 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.273 -2.581 -9.476 9.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.110 3.890 3 H 0.058 0.942 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.269 5.269 13 C -0.066 4.066 14 C -0.216 4.216 15 S -0.076 6.076 16 C -0.168 4.168 17 H 0.110 0.890 18 C -0.189 4.189 19 C -0.069 4.069 20 H 0.049 0.951 21 H 0.107 0.893 22 H 0.026 0.974 23 H 0.070 0.930 24 H 0.114 0.886 25 H 0.053 0.947 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.439 -3.000 -10.270 10.795 hybrid contribution -0.281 0.186 1.951 1.980 sum 1.158 -2.814 -8.318 8.857 Atomic orbital electron populations 1.22409 1.00554 0.99431 1.00572 1.19307 0.89879 0.94328 0.85474 0.94248 1.21131 1.30622 1.12581 0.89587 0.91899 1.24934 0.95175 0.95132 0.99049 1.69895 1.36985 1.23007 1.23389 0.86459 0.78546 0.79670 0.82854 1.19735 1.21039 1.21138 1.61453 1.60368 1.02120 1.02943 1.22060 0.94433 0.90626 0.99439 1.23576 1.04616 1.00446 0.92999 1.86491 1.92053 1.11582 1.17477 1.23217 1.03072 0.92267 0.98251 0.88991 1.21585 1.02512 0.98910 0.95921 1.22182 0.96661 0.97856 0.90210 0.95122 0.89282 0.97447 0.92996 0.88563 0.94743 0.89477 0.88591 0.91994 0.91244 0.92101 0.94506 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 8.33 37.16 0.31 -3.74 16 2 C 0.22 5.28 2.29 -68.87 -0.16 5.13 16 3 H 0.04 1.06 7.79 -51.93 -0.40 0.66 16 4 C -0.50 -13.33 7.70 -34.44 -0.27 -13.60 16 5 H 0.06 1.68 7.28 -52.49 -0.38 1.30 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 7 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 8 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 12 N -0.54 -11.42 4.32 -228.45 -0.99 -12.41 16 13 C 0.06 1.24 4.05 -3.93 -0.02 1.22 16 14 C -0.07 -1.11 6.69 37.28 0.25 -0.86 16 15 S -0.30 -4.90 21.77 -107.50 -2.34 -7.24 16 16 C -0.04 -0.61 3.33 -26.60 -0.09 -0.70 16 17 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 18 C -0.13 -1.64 9.24 37.16 0.34 -1.30 16 19 C 0.06 1.11 4.17 -3.93 -0.02 1.09 16 20 H 0.03 0.70 6.73 -51.93 -0.35 0.35 16 21 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 22 H 0.01 0.15 7.18 -51.93 -0.37 -0.23 16 23 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 24 H 0.10 2.00 6.56 -51.93 -0.34 1.66 16 25 H 0.03 0.67 7.10 -51.93 -0.37 0.30 16 26 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 27 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.69 7.28 -51.93 -0.38 0.31 16 32 H 0.08 1.37 7.73 -51.93 -0.40 0.97 16 LS Contribution 260.24 15.07 3.92 3.92 Total: -1.00 -27.28 260.24 -8.52 -35.80 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -4.98 Total: -0.39 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 0.26 Total: -11.28 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.36 Total: -36.77 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -4.90 SS G_CDS: -2.34 Total: -7.24 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.28 -8.52 -35.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122514161.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.236 kcal (2) G-P(sol) polarization free energy of solvation -27.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds