Wall clock time and date at job start Mon Mar 30 2020 03:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.78784 * 2 1 4 4 C 1.53255 * 109.62882 * 120.48502 * 2 1 3 5 5 N 1.46465 * 109.85702 * 181.71120 * 4 2 1 6 6 C 1.46904 * 110.99875 * 162.23739 * 5 4 2 7 7 C 1.52997 * 109.47159 * 192.02246 * 6 5 4 8 8 C 1.50701 * 109.47318 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99510 * 0.02562 * 8 7 6 10 10 C 1.37868 * 119.99989 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00334 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99762 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47093 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46848 * 119.99788 * 12 10 8 15 15 H 1.48498 * 109.47346 * 239.99712 * 12 10 8 16 16 C 1.46469 * 112.55929 * 287.34464 * 5 4 2 17 17 C 1.53246 * 109.86010 * 72.65658 * 16 5 4 18 18 S 1.81891 * 108.50831 * 297.99616 * 17 16 5 19 19 H 1.09004 * 109.47190 * 180.49660 * 1 2 3 20 20 H 1.08999 * 109.47696 * 300.49776 * 1 2 3 21 21 H 1.09006 * 109.47322 * 60.50177 * 1 2 3 22 22 H 1.08999 * 109.40530 * 301.83054 * 4 2 1 23 23 H 1.08997 * 109.39982 * 61.59497 * 4 2 1 24 24 H 1.09003 * 109.46967 * 312.02619 * 6 5 4 25 25 H 1.09001 * 109.46933 * 72.02464 * 6 5 4 26 26 H 1.08991 * 109.47422 * 300.00481 * 7 6 5 27 27 H 1.09008 * 109.46704 * 60.00061 * 7 6 5 28 28 H 0.97003 * 119.99758 * 180.02562 * 11 10 8 29 29 H 1.09006 * 109.40755 * 312.53901 * 16 5 4 30 30 H 1.08997 * 109.41056 * 192.77981 * 16 5 4 31 31 H 1.09010 * 109.62813 * 178.29313 * 17 16 5 32 32 H 1.09004 * 109.79288 * 57.80213 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7323 1.2439 5 7 3.5089 -0.6999 1.2700 6 6 4.0183 -1.0040 2.6139 7 6 5.5103 -0.6717 2.6810 8 6 6.0328 -0.9830 4.0599 9 1 5.3672 -1.3788 4.8128 10 6 7.3602 -0.7627 4.3600 11 7 8.1704 -0.2804 3.4433 12 14 8.0077 -1.1480 6.0694 13 1 6.9030 -1.6757 6.9098 14 1 9.0850 -2.1655 5.9729 15 1 8.5499 0.0903 6.6841 16 6 4.1084 -1.5850 0.2688 17 6 3.9230 -0.9888 -1.1308 18 16 2.1412 -0.8695 -1.4762 19 1 -0.3634 -1.0277 0.0089 20 1 -0.3634 0.5215 0.8854 21 1 -0.3634 0.5060 -0.8945 22 1 1.6558 -0.2450 2.1380 23 1 1.7058 -1.7679 1.2206 24 1 3.4797 -0.4074 3.3502 25 1 3.8720 -2.0629 2.8269 26 1 6.0488 -1.2682 1.9448 27 1 5.6565 0.3873 2.4680 28 1 9.1045 -0.1258 3.6544 29 1 3.6261 -2.5615 0.3133 30 1 5.1725 -1.6983 0.4761 31 1 4.3968 -1.6351 -1.8698 32 1 4.3713 0.0039 -1.1714 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122518894.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:39 Heat of formation + Delta-G solvation = -11.831935 kcal Electronic energy + Delta-G solvation = -12671.786454 eV Core-core repulsion = 10564.850093 eV Total energy + Delta-G solvation = -2106.936361 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.00808 -33.90998 -32.89647 -31.01937 -28.94704 -25.94785 -23.99277 -22.38128 -21.09666 -19.88384 -16.88245 -16.30948 -15.17013 -14.76730 -14.42852 -14.38088 -14.01163 -13.82592 -12.92439 -12.39858 -12.24692 -11.93845 -11.85194 -11.68986 -11.20756 -11.10209 -10.95037 -10.57082 -10.51566 -9.92680 -9.64774 -9.32403 -9.15300 -8.37565 -7.89199 -7.52500 -6.03993 -4.06689 1.93448 2.68376 3.28627 3.36243 3.39944 4.16995 4.45824 4.87497 5.05776 5.22556 5.26544 5.32048 5.44768 5.54386 5.56459 5.67941 5.81558 5.94431 6.03567 6.11508 6.14161 6.30411 6.42091 6.87861 7.36200 7.47875 7.73190 7.82401 8.01891 8.37806 9.00499 9.57477 11.07392 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.060445 B = 0.006318 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.121446 B = 4430.580140 C = 4741.309821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.041 4.041 3 H 0.095 0.905 4 C 0.059 3.941 5 N -0.553 5.553 6 C 0.068 3.932 7 C 0.027 3.973 8 C -0.523 4.523 9 H 0.055 0.945 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.053 3.947 17 C -0.068 4.068 18 S -0.293 6.293 19 H 0.062 0.938 20 H 0.070 0.930 21 H 0.063 0.937 22 H 0.080 0.920 23 H 0.040 0.960 24 H 0.063 0.937 25 H 0.022 0.978 26 H 0.018 0.982 27 H 0.025 0.975 28 H 0.260 0.740 29 H 0.039 0.961 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.744 -0.818 -6.902 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.171 4.171 3 H 0.113 0.887 4 C -0.070 4.070 5 N -0.278 5.278 6 C -0.058 4.058 7 C -0.010 4.010 8 C -0.562 4.562 9 H 0.073 0.927 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.209 1.209 16 C -0.076 4.076 17 C -0.216 4.216 18 S -0.067 6.067 19 H 0.081 0.919 20 H 0.089 0.911 21 H 0.082 0.918 22 H 0.099 0.901 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.992 -0.670 -7.946 14.401 hybrid contribution 0.958 -0.528 2.081 2.351 sum -11.034 -1.198 -5.865 12.554 Atomic orbital electron populations 1.21590 0.92181 1.02762 1.02454 1.23210 0.98278 1.01687 0.93884 0.88682 1.22270 0.89147 0.98785 0.96844 1.61237 1.04856 1.54237 1.07440 1.22314 1.00003 0.97686 0.85830 1.19134 0.87529 0.97698 0.96657 1.21209 0.94516 1.43087 0.97345 0.92711 1.24990 0.97025 0.95168 0.97091 1.69977 1.04968 1.44912 1.33339 0.86534 0.78904 0.78023 0.84529 1.19763 1.20997 1.20943 1.22253 1.02190 0.93355 0.89840 1.23518 0.92731 1.05372 1.00001 1.86631 1.09888 1.78021 1.32149 0.91882 0.91142 0.91834 0.90136 0.94161 0.91896 0.95987 0.96429 0.95690 0.92995 0.94272 0.88198 0.87985 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 9.23 37.16 0.34 -1.04 16 2 C -0.04 -0.56 3.34 -26.60 -0.09 -0.64 16 3 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 4 C 0.06 0.89 4.72 -3.93 -0.02 0.87 16 5 N -0.55 -9.95 4.40 -235.04 -1.03 -10.98 16 6 C 0.07 1.41 4.90 -3.82 -0.02 1.39 16 7 C 0.03 0.69 4.94 -27.88 -0.14 0.56 16 8 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 9 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 12 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 13 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 C 0.05 0.89 5.28 -3.93 -0.02 0.87 16 17 C -0.07 -1.00 6.69 37.28 0.25 -0.75 16 18 S -0.29 -4.22 21.77 -107.50 -2.34 -6.56 16 19 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 20 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.08 1.14 7.73 -51.93 -0.40 0.74 16 23 H 0.04 0.60 7.91 -51.93 -0.41 0.19 16 24 H 0.06 1.28 7.79 -51.93 -0.40 0.88 16 25 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 26 H 0.02 0.47 6.26 -51.93 -0.33 0.14 16 27 H 0.02 0.69 8.14 -51.92 -0.42 0.27 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.04 0.65 7.92 -51.93 -0.41 0.23 16 30 H 0.10 1.86 5.89 -51.93 -0.31 1.56 16 31 H 0.10 1.31 8.14 -51.92 -0.42 0.89 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 268.63 15.07 4.05 4.05 Total: -1.00 -29.34 268.63 -8.89 -38.23 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -5.18 Total: -3.18 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.10 Total: -12.12 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.30 Total: -36.86 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -4.22 SS G_CDS: -2.34 Total: -6.56 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.34 -8.89 -38.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122518894.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.401 kcal (2) G-P(sol) polarization free energy of solvation -29.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds