Wall clock time and date at job start Mon Mar 30 2020 02:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34230 * 126.49763 * 2 1 4 4 N 1.36837 * 109.94093 * 179.97438 * 3 2 1 5 5 H 0.97000 * 125.07031 * 180.02562 * 4 3 2 6 6 C 1.37693 * 109.87088 * 359.97438 * 4 3 2 7 7 C 1.40705 * 107.15535 * 0.02562 * 6 4 3 8 8 C 1.39586 * 119.93391 * 179.97438 * 7 6 4 9 9 C 1.36661 * 119.76238 * 359.97438 * 8 7 6 10 10 C 1.38783 * 120.53089 * 359.74770 * 9 8 7 11 11 C 1.37797 * 120.66299 * 0.51425 * 10 9 8 12 12 C 1.50703 * 120.10910 * 179.76644 * 11 10 9 13 13 C 1.50701 * 109.47064 * 264.72092 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 H 1.09001 * 109.47764 * 89.97587 * 1 2 3 22 22 H 1.09004 * 109.46788 * 209.96948 * 1 2 3 23 23 H 1.08992 * 109.47612 * 329.96731 * 1 2 3 24 24 H 1.08001 * 125.03391 * 359.97438 * 3 2 1 25 25 H 1.07997 * 120.12049 * 180.02562 * 8 7 6 26 26 H 1.08007 * 119.73173 * 180.02562 * 9 8 7 27 27 H 1.08000 * 119.67576 * 180.25721 * 10 9 8 28 28 H 1.09002 * 109.47152 * 144.72185 * 12 11 10 29 29 H 1.09001 * 109.46980 * 24.72285 * 12 11 10 30 30 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3053 1.0791 0.0000 4 7 3.6170 0.6891 0.0006 5 1 4.3774 1.2913 0.0010 6 6 3.6966 -0.6855 0.0015 7 6 2.3784 -1.1776 0.0010 8 6 2.1488 -2.5544 0.0012 9 6 3.2075 -3.4187 0.0014 10 6 4.5096 -2.9385 -0.0038 11 6 4.7589 -1.5833 0.0013 12 6 6.1778 -1.0756 0.0008 13 6 6.6093 -0.7891 1.4160 14 1 5.9247 -0.9581 2.2340 15 6 7.8784 -0.3121 1.6666 16 7 8.7122 -0.1067 0.6706 17 14 8.4135 0.0424 3.4209 18 1 8.3336 -1.2041 4.2242 19 1 9.8116 0.5427 3.4204 20 1 7.5204 1.0707 4.0127 21 1 -0.3635 0.0004 -1.0276 22 1 -0.3633 -0.8903 0.5134 23 1 -0.3634 0.8896 0.5143 24 1 1.9632 2.1034 -0.0004 25 1 1.1383 -2.9354 0.0004 26 1 3.0293 -4.4839 0.0012 27 1 5.3359 -3.6339 -0.0077 28 1 6.2362 -0.1608 -0.5891 29 1 6.8336 -1.8303 -0.4333 30 1 9.6050 0.2292 0.8469 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000141359463.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:19 Heat of formation + Delta-G solvation = 35.612843 kcal Electronic energy + Delta-G solvation = -13609.875535 eV Core-core repulsion = 11369.552583 eV Total energy + Delta-G solvation = -2240.322952 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.63162 -36.44250 -33.67466 -32.32531 -30.51757 -28.62584 -26.85125 -25.96463 -23.30183 -21.13374 -21.05137 -18.35358 -17.03725 -16.32531 -15.61962 -14.78891 -14.43234 -14.06365 -13.59406 -12.75856 -12.65062 -12.63715 -12.21819 -12.16984 -11.60498 -11.31189 -11.19609 -10.90406 -10.80112 -10.50100 -10.35781 -9.59645 -9.41267 -8.58804 -8.47639 -7.54587 -6.86893 -6.08262 -4.13895 1.85952 2.35615 3.22723 3.27784 3.32253 3.36449 3.83938 4.37221 4.67980 5.17297 5.24532 5.44715 5.58273 5.59279 5.78966 5.92084 5.97661 6.12721 6.28934 6.34846 6.47133 6.58346 6.87023 7.05934 7.30086 7.39223 7.40731 7.46923 7.77328 7.86481 7.90845 8.19151 8.28380 8.92106 9.50624 10.99959 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.034892 B = 0.008574 C = 0.007674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.292432 B = 3265.070454 C = 3647.907459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.194 4.194 3 C 0.044 3.956 4 N -0.583 5.583 5 H 0.419 0.581 6 C 0.103 3.897 7 C -0.108 4.108 8 C -0.107 4.107 9 C -0.139 4.139 10 C -0.123 4.123 11 C -0.040 4.040 12 C 0.051 3.949 13 C -0.513 4.513 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.277 1.277 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.161 0.839 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.021 0.979 29 H 0.031 0.969 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.159 0.211 -1.790 12.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.202 4.202 3 C -0.084 4.084 4 N -0.184 5.184 5 H 0.257 0.743 6 C -0.004 4.004 7 C -0.112 4.112 8 C -0.126 4.126 9 C -0.158 4.158 10 C -0.142 4.142 11 C -0.042 4.042 12 C 0.015 3.985 13 C -0.551 4.551 14 H 0.074 0.926 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.722 3.278 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.203 1.203 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.178 0.822 25 H 0.126 0.874 26 H 0.129 0.871 27 H 0.137 0.863 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.872 0.384 -1.832 12.018 hybrid contribution 0.828 0.539 1.017 1.418 sum -11.043 0.923 -0.814 11.112 Atomic orbital electron populations 1.19980 0.90299 1.01463 1.00857 1.20133 0.94699 0.91251 1.14098 1.21479 0.82878 0.98591 1.05438 1.41768 1.07184 1.05769 1.63684 0.74319 1.18136 0.94667 0.83110 1.04460 1.19031 0.91958 0.93058 1.07201 1.19935 0.98087 0.90997 1.03574 1.20520 0.92775 0.98583 1.03907 1.20689 0.96207 0.94234 1.03114 1.19748 0.95847 0.91680 0.96954 1.18251 0.86290 0.96504 0.97490 1.21053 0.98264 1.43804 0.92012 0.92564 1.25013 0.96523 0.95522 0.97186 1.69948 1.06963 1.45487 1.30894 0.86611 0.77541 0.78819 0.84812 1.20055 1.21187 1.20281 0.92626 0.92357 0.92576 0.82211 0.87393 0.87134 0.86324 0.96121 0.95075 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.41 36.00 0.37 -0.47 16 2 C -0.19 -3.17 6.32 -102.71 -0.65 -3.82 16 3 C 0.04 0.69 11.73 -16.73 -0.20 0.49 16 4 N -0.58 -10.81 6.07 -10.65 -0.06 -10.88 16 5 H 0.42 7.45 8.96 -40.82 -0.37 7.09 16 6 C 0.10 2.19 6.97 -83.99 -0.59 1.61 16 7 C -0.11 -2.08 6.35 -105.14 -0.67 -2.75 16 8 C -0.11 -1.90 10.05 -39.65 -0.40 -2.30 16 9 C -0.14 -2.48 9.97 -39.95 -0.40 -2.88 16 10 C -0.12 -2.52 9.65 -39.54 -0.38 -2.91 16 11 C -0.04 -0.92 5.08 -104.47 -0.53 -1.45 16 12 C 0.05 1.33 5.11 -29.03 -0.15 1.18 16 13 C -0.51 -14.34 9.09 -34.44 -0.31 -14.65 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 17 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 25 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 26 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 27 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 28 H 0.02 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.03 0.84 8.05 -51.93 -0.42 0.43 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 264.26 15.07 3.98 3.98 Total: -1.00 -30.74 264.26 -8.06 -38.80 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -3.71 Total: 3.38 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -3.99 Total: -26.39 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.67 Total: -36.27 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.74 -8.06 -38.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141359463.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.415 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds