Wall clock time and date at job start Mon Mar 30 2020 02:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36477 * 120.09642 * 2 1 4 4 C 1.38901 * 120.59177 * 179.97438 * 3 2 1 5 5 C 1.37997 * 120.69891 * 0.03019 * 4 3 2 6 6 C 1.38895 * 119.89475 * 359.94650 * 5 4 3 7 7 C 1.40450 * 120.10289 * 179.97438 * 2 1 3 8 8 C 1.40941 * 133.09111 * 359.97438 * 7 2 1 9 9 C 1.39125 * 107.49430 * 180.02562 * 8 7 2 10 10 C 1.39920 * 125.69392 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00089 * 159.84008 * 10 9 8 12 12 C 1.40192 * 119.99764 * 339.84217 * 10 9 8 13 13 N 1.30747 * 119.99972 * 336.87662 * 12 10 9 14 14 Si 1.86798 * 119.99902 * 156.88018 * 12 10 9 15 15 H 1.48507 * 109.46779 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47129 * 299.99603 * 14 12 10 17 17 H 1.48501 * 109.47036 * 60.00278 * 14 12 10 18 18 N 1.38049 * 132.80346 * 180.37954 * 6 5 4 19 19 C 1.46498 * 125.60162 * 359.97438 * 18 6 5 20 20 H 1.09004 * 109.47224 * 270.01837 * 1 2 3 21 21 H 1.09002 * 109.47123 * 30.02114 * 1 2 3 22 22 H 1.08997 * 109.47197 * 150.02116 * 1 2 3 23 23 H 1.08001 * 119.70306 * 359.96176 * 3 2 1 24 24 H 1.07999 * 119.64594 * 180.02562 * 4 3 2 25 25 H 1.08001 * 120.05414 * 179.97438 * 5 4 3 26 26 H 1.08002 * 126.25447 * 0.02562 * 8 7 2 27 27 H 0.96999 * 119.99754 * 353.91135 * 13 12 10 28 28 H 1.09000 * 109.47193 * 270.18301 * 19 18 6 29 29 H 1.08995 * 109.46980 * 30.18401 * 19 18 6 30 30 H 1.09000 * 109.46961 * 150.18152 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1913 1.1808 0.0000 4 6 3.5803 1.1928 0.0005 5 6 4.2950 0.0123 0.0005 6 6 3.6235 -1.2035 0.0010 7 6 2.2114 -1.2151 0.0005 8 6 1.8039 -2.5643 0.0016 9 6 2.9532 -3.3483 0.0023 10 6 2.9872 -4.7471 0.0039 11 1 3.8780 -5.2659 -0.3180 12 6 1.8649 -5.4750 0.4234 13 7 0.9844 -4.9203 1.2149 14 14 1.6277 -7.2374 -0.1484 15 1 0.3735 -7.7814 0.4318 16 1 1.5427 -7.2697 -1.6305 17 1 2.7783 -8.0623 0.2997 18 7 4.0567 -2.5143 0.0077 19 6 5.4552 -2.9503 0.0162 20 1 -0.3634 0.0003 1.0277 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8901 -0.5135 23 1 1.6480 2.1142 -0.0006 24 1 4.1064 2.1360 0.0009 25 1 5.3748 0.0338 0.0005 26 1 0.7855 -2.9239 0.0019 27 1 1.1505 -4.0383 1.5827 28 1 5.8082 -3.0589 -1.0093 29 1 6.0639 -2.2086 0.5333 30 1 5.5341 -3.9078 0.5310 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214383652.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:36 Heat of formation + Delta-G solvation = 30.482333 kcal Electronic energy + Delta-G solvation = -13902.932766 eV Core-core repulsion = 11662.387338 eV Total energy + Delta-G solvation = -2240.545428 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.96249 -36.32845 -33.96403 -32.01089 -30.58305 -28.39145 -26.12332 -25.33695 -24.57432 -20.80244 -20.36398 -18.69986 -17.56988 -15.57495 -15.20343 -14.42359 -14.27682 -14.00197 -13.19160 -12.89969 -12.82199 -12.78300 -11.88072 -11.68440 -11.54664 -11.37071 -11.19176 -11.11077 -10.49461 -10.44261 -10.08091 -9.86077 -9.67879 -9.11288 -8.35977 -7.37197 -7.13412 -6.49926 -4.46745 2.22790 2.72181 3.07572 3.13365 3.31739 3.87601 3.96939 4.12925 4.89288 5.12703 5.56712 5.69476 5.79973 5.90759 6.02847 6.06859 6.10693 6.33201 6.37227 6.50478 6.71125 6.82219 6.84637 7.19205 7.40979 7.44635 7.52346 7.59624 7.76557 8.02485 8.06237 8.21573 8.52976 8.77360 8.97474 10.02077 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.036847 B = 0.009999 C = 0.008080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.726553 B = 2799.609002 C = 3464.492251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.111 4.111 3 C -0.135 4.135 4 C -0.176 4.176 5 C -0.120 4.120 6 C 0.041 3.959 7 C -0.025 4.025 8 C -0.372 4.372 9 C 0.273 3.727 10 C -0.520 4.520 11 H 0.076 0.924 12 C 0.046 3.954 13 N -0.788 5.788 14 Si 1.073 2.927 15 H -0.272 1.272 16 H -0.274 1.274 17 H -0.277 1.277 18 N -0.517 5.517 19 C 0.099 3.901 20 H 0.054 0.946 21 H 0.049 0.951 22 H 0.059 0.941 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.124 0.876 27 H 0.308 0.692 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 2.350 -1.340 4.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.154 4.154 4 C -0.195 4.195 5 C -0.142 4.142 6 C -0.061 4.061 7 C -0.029 4.029 8 C -0.394 4.394 9 C 0.168 3.832 10 C -0.552 4.552 11 H 0.094 0.906 12 C -0.178 4.178 13 N -0.411 5.411 14 Si 0.896 3.104 15 H -0.196 1.196 16 H -0.199 1.199 17 H -0.202 1.202 18 N -0.208 5.208 19 C -0.044 4.044 20 H 0.073 0.927 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.118 0.882 24 H 0.120 0.880 25 H 0.114 0.886 26 H 0.142 0.858 27 H 0.122 0.878 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.292 1.017 -1.227 2.792 hybrid contribution 1.321 1.409 -0.083 1.934 sum 3.613 2.427 -1.310 4.545 Atomic orbital electron populations 1.20509 0.92737 1.01101 1.00851 1.18942 0.94579 0.91683 1.05976 1.20110 0.93854 0.96125 1.05337 1.20220 0.93790 0.95724 1.09769 1.19715 0.97385 0.90313 1.06768 1.18213 0.93733 0.84611 1.09521 1.18025 0.91421 0.93445 1.00053 1.20556 0.96668 0.89821 1.32349 1.18163 0.83610 0.90278 0.91148 1.19674 1.03435 0.89290 1.42787 0.90604 1.26945 0.91135 1.06864 0.92893 1.70331 1.33888 1.19265 1.17661 0.83527 0.77426 0.72184 0.77291 1.19647 1.19932 1.20224 1.44245 1.04966 1.03902 1.67665 1.21468 0.81288 1.00693 1.00919 0.92684 0.93214 0.92227 0.88246 0.88021 0.88638 0.85815 0.87755 0.93465 0.92014 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 9.92 36.00 0.36 -1.46 16 2 C -0.11 -2.49 5.90 -104.43 -0.62 -3.10 16 3 C -0.13 -2.73 9.61 -39.97 -0.38 -3.12 16 4 C -0.18 -3.49 10.02 -39.42 -0.40 -3.89 16 5 C -0.12 -2.56 9.96 -39.43 -0.39 -2.95 16 6 C 0.04 1.01 6.81 -83.69 -0.57 0.44 16 7 C -0.02 -0.63 5.97 -106.91 -0.64 -1.27 16 8 C -0.37 -10.00 8.39 -38.23 -0.32 -10.32 16 9 C 0.27 7.26 6.27 -83.98 -0.53 6.73 16 10 C -0.52 -13.37 8.68 -38.22 -0.33 -13.70 16 11 H 0.08 1.84 7.62 -52.49 -0.40 1.44 16 12 C 0.05 1.15 5.25 -17.28 -0.09 1.06 16 13 N -0.79 -20.78 12.57 55.56 0.70 -20.08 16 14 Si 1.07 20.92 29.99 -169.99 -5.10 15.82 16 15 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 16 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 17 H -0.28 -5.05 7.11 56.52 0.40 -4.65 16 18 N -0.52 -12.47 3.24 -118.87 -0.39 -12.86 16 19 C 0.10 1.87 10.80 59.85 0.65 2.52 16 20 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 21 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 22 H 0.06 1.18 7.81 -51.93 -0.41 0.78 16 23 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 24 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 25 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 26 H 0.12 3.41 6.85 -52.49 -0.36 3.05 16 27 H 0.31 8.45 6.29 -40.82 -0.26 8.19 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.02 8.12 -51.93 -0.42 0.59 16 30 H 0.07 1.37 7.57 -51.93 -0.39 0.98 16 LS Contribution 257.51 15.07 3.88 3.88 Total: -1.00 -28.57 257.51 -7.73 -36.30 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -3.57 Total: 6.00 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: -3.26 Total: -29.07 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.31 Total: -32.94 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.10 Total: 15.82 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.57 -7.73 -36.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214383652.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.785 kcal (2) G-P(sol) polarization free energy of solvation -28.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds