Wall clock time and date at job start Mon Mar 30 2020 02:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36477 * 120.09642 * 2 1 4 4 C 1.38901 * 120.59177 * 179.97438 * 3 2 1 5 5 C 1.37997 * 120.69891 * 0.03019 * 4 3 2 6 6 C 1.38895 * 119.89475 * 359.94650 * 5 4 3 7 7 C 1.40450 * 120.10289 * 179.97438 * 2 1 3 8 8 C 1.40941 * 133.09111 * 359.97438 * 7 2 1 9 9 C 1.39125 * 107.49430 * 180.02562 * 8 7 2 10 10 C 1.39920 * 125.69392 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00089 * 159.84008 * 10 9 8 12 12 C 1.40192 * 119.99764 * 339.84217 * 10 9 8 13 13 N 1.30747 * 119.99972 * 336.87662 * 12 10 9 14 14 Si 1.86798 * 119.99902 * 156.88018 * 12 10 9 15 15 H 1.48507 * 109.46779 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47129 * 299.99603 * 14 12 10 17 17 H 1.48501 * 109.47036 * 60.00278 * 14 12 10 18 18 N 1.38049 * 132.80346 * 180.37954 * 6 5 4 19 19 C 1.46498 * 125.60162 * 359.97438 * 18 6 5 20 20 H 1.09004 * 109.47224 * 270.01837 * 1 2 3 21 21 H 1.09002 * 109.47123 * 30.02114 * 1 2 3 22 22 H 1.08997 * 109.47197 * 150.02116 * 1 2 3 23 23 H 1.08001 * 119.70306 * 359.96176 * 3 2 1 24 24 H 1.07999 * 119.64594 * 180.02562 * 4 3 2 25 25 H 1.08001 * 120.05414 * 179.97438 * 5 4 3 26 26 H 1.08002 * 126.25447 * 0.02562 * 8 7 2 27 27 H 0.96999 * 119.99754 * 353.91135 * 13 12 10 28 28 H 1.09000 * 109.47193 * 270.18301 * 19 18 6 29 29 H 1.08995 * 109.46980 * 30.18401 * 19 18 6 30 30 H 1.09000 * 109.46961 * 150.18152 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1913 1.1808 0.0000 4 6 3.5803 1.1928 0.0005 5 6 4.2950 0.0123 0.0005 6 6 3.6235 -1.2035 0.0010 7 6 2.2114 -1.2151 0.0005 8 6 1.8039 -2.5643 0.0016 9 6 2.9532 -3.3483 0.0023 10 6 2.9872 -4.7471 0.0039 11 1 3.8780 -5.2659 -0.3180 12 6 1.8649 -5.4750 0.4234 13 7 0.9844 -4.9203 1.2149 14 14 1.6277 -7.2374 -0.1484 15 1 0.3735 -7.7814 0.4318 16 1 1.5427 -7.2697 -1.6305 17 1 2.7783 -8.0623 0.2997 18 7 4.0567 -2.5143 0.0077 19 6 5.4552 -2.9503 0.0162 20 1 -0.3634 0.0003 1.0277 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8901 -0.5135 23 1 1.6480 2.1142 -0.0006 24 1 4.1064 2.1360 0.0009 25 1 5.3748 0.0338 0.0005 26 1 0.7855 -2.9239 0.0019 27 1 1.1505 -4.0383 1.5827 28 1 5.8082 -3.0589 -1.0093 29 1 6.0639 -2.2086 0.5333 30 1 5.5341 -3.9078 0.5310 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214383652.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:36 Heat of formation + Delta-G solvation = 15.722218 kcal Electronic energy + Delta-G solvation = -13903.572813 eV Core-core repulsion = 11662.387338 eV Total energy + Delta-G solvation = -2241.185475 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.73926 -38.03863 -35.80288 -33.70851 -32.24302 -30.20816 -27.81552 -26.98981 -26.36584 -22.59004 -22.08854 -20.46673 -19.41690 -17.27972 -16.93241 -16.14244 -15.97183 -15.58123 -14.85868 -14.72276 -14.40237 -14.38773 -13.55451 -13.34799 -13.12132 -13.03531 -12.85680 -12.76491 -12.11137 -11.95789 -11.74437 -11.59552 -11.43580 -10.91522 -10.13519 -9.30698 -8.96987 -8.28345 -6.42901 0.50049 1.01586 1.49307 1.53673 1.81046 2.11936 2.27342 2.44601 3.08900 3.28294 4.03360 4.10084 4.28136 4.43960 4.48559 4.52643 4.62566 4.73512 4.84059 4.87345 4.99656 5.10917 5.22255 5.38466 5.54639 5.61858 5.65318 5.82990 5.95998 6.17152 6.27628 6.37595 6.69592 6.92438 7.13210 8.04091 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.036847 B = 0.009999 C = 0.008080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.726553 B = 2799.609002 C = 3464.492251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.124 4.124 3 C -0.137 4.137 4 C -0.157 4.157 5 C -0.129 4.129 6 C 0.020 3.980 7 C -0.068 4.068 8 C -0.398 4.398 9 C 0.246 3.754 10 C -0.546 4.546 11 H 0.083 0.917 12 C 0.009 3.991 13 N -0.815 5.815 14 Si 1.125 2.875 15 H -0.273 1.273 16 H -0.265 1.265 17 H -0.252 1.252 18 N -0.524 5.524 19 C 0.093 3.907 20 H 0.061 0.939 21 H 0.083 0.917 22 H 0.038 0.962 23 H 0.137 0.863 24 H 0.145 0.855 25 H 0.125 0.875 26 H 0.098 0.902 27 H 0.288 0.712 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.429 3.963 -1.824 6.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.156 4.156 4 C -0.176 4.176 5 C -0.150 4.150 6 C -0.082 4.082 7 C -0.073 4.073 8 C -0.421 4.421 9 C 0.140 3.860 10 C -0.579 4.579 11 H 0.102 0.898 12 C -0.209 4.209 13 N -0.439 5.439 14 Si 0.941 3.059 15 H -0.197 1.197 16 H -0.189 1.189 17 H -0.176 1.176 18 N -0.214 5.214 19 C -0.048 4.048 20 H 0.079 0.921 21 H 0.102 0.898 22 H 0.058 0.942 23 H 0.155 0.845 24 H 0.163 0.837 25 H 0.143 0.857 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.681 2.655 -1.710 4.849 hybrid contribution 0.953 1.214 0.062 1.544 sum 4.633 3.868 -1.647 6.256 Atomic orbital electron populations 1.20525 0.91155 1.01759 1.01465 1.19434 0.96212 0.91617 1.05198 1.20585 0.94556 0.96650 1.03853 1.20835 0.93889 0.96960 1.05908 1.20144 0.99117 0.89461 1.06273 1.18699 0.93757 0.85711 1.10066 1.18399 0.92892 0.93756 1.02253 1.20474 0.95907 0.91452 1.34234 1.18413 0.84633 0.90991 0.91987 1.19923 1.04400 0.89431 1.44114 0.89847 1.28523 0.90363 1.10358 0.91651 1.70443 1.34992 1.18631 1.19795 0.82913 0.78117 0.67572 0.77264 1.19723 1.18948 1.17571 1.44480 1.06145 1.03718 1.67037 1.21739 0.79137 1.01531 1.02373 0.92054 0.89804 0.94241 0.84482 0.83689 0.85683 0.88373 0.89889 0.91841 0.89346 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.49 9.92 71.23 0.71 -2.78 16 2 C -0.12 -5.44 5.90 -19.74 -0.12 -5.56 16 3 C -0.14 -5.07 9.61 22.02 0.21 -4.86 16 4 C -0.16 -5.52 10.02 22.37 0.22 -5.30 16 5 C -0.13 -5.09 9.96 22.37 0.22 -4.87 16 6 C 0.02 0.97 6.81 39.05 0.27 1.23 16 7 C -0.07 -3.55 5.97 -21.35 -0.13 -3.67 16 8 C -0.40 -22.70 8.39 23.15 0.19 -22.50 16 9 C 0.25 13.64 6.27 38.74 0.24 13.89 16 10 C -0.55 -29.15 8.68 23.15 0.20 -28.95 16 11 H 0.08 4.14 7.62 -2.91 -0.02 4.12 16 12 C 0.01 0.47 5.25 85.33 0.45 0.91 16 13 N -0.82 -45.41 12.57 21.87 0.28 -45.13 16 14 Si 1.13 42.64 29.99 68.60 2.06 44.70 16 15 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 16 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 17 H -0.25 -8.47 7.11 99.48 0.71 -7.76 16 18 N -0.52 -25.50 3.24 -530.01 -1.72 -27.22 16 19 C 0.09 3.43 10.80 127.77 1.38 4.81 16 20 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 21 H 0.08 2.53 8.08 -2.39 -0.02 2.52 16 22 H 0.04 1.61 7.81 -2.39 -0.02 1.59 16 23 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 24 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 25 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 26 H 0.10 5.90 6.85 -2.91 -0.02 5.88 16 27 H 0.29 17.05 6.29 -92.71 -0.58 16.46 16 28 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.09 2.71 8.12 -2.39 -0.02 2.70 16 30 H 0.07 2.73 7.57 -2.39 -0.02 2.71 16 Total: -1.00 -65.02 257.51 5.78 -59.24 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 1.31 Total: 26.06 kcal Atomic # 6 Polarization: -61.50 SS G_CDS: 3.85 Total: -57.64 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -1.44 Total: -72.35 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.06 Total: 44.70 kcal Total: -65.02 5.78 -59.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214383652.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.960 kcal (2) G-P(sol) polarization free energy of solvation -65.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds