Wall clock time and date at job start Mon Mar 30 2020 02:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38950 * 119.64575 * 2 1 4 4 C 1.36434 * 120.58969 * 180.25814 * 3 2 1 5 5 C 1.40483 * 119.80141 * 359.44631 * 4 3 2 6 6 C 1.40938 * 133.08864 * 180.19008 * 5 4 3 7 7 C 1.39125 * 107.49717 * 180.32396 * 6 5 4 8 8 C 1.39920 * 125.69655 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00072 * 179.97438 * 8 7 6 10 10 C 1.40190 * 119.99827 * 359.95567 * 8 7 6 11 11 N 1.30746 * 119.99863 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 119.99768 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47611 * 59.99647 * 12 10 8 14 14 H 1.48505 * 109.47028 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47258 * 299.99603 * 12 10 8 16 16 N 1.38321 * 108.60903 * 0.02562 * 7 6 5 17 17 C 1.46500 * 125.60188 * 179.97438 * 16 7 6 18 18 C 1.38043 * 108.79213 * 0.02562 * 16 7 6 19 19 C 1.37953 * 119.65212 * 179.97438 * 2 1 3 20 20 H 1.09004 * 109.47153 * 90.00766 * 1 2 3 21 21 H 1.09005 * 109.46784 * 210.00109 * 1 2 3 22 22 H 1.09000 * 109.47633 * 330.00161 * 1 2 3 23 23 H 1.08002 * 119.70207 * 359.97167 * 3 2 1 24 24 H 1.07996 * 120.09303 * 179.70310 * 4 3 2 25 25 H 1.07998 * 126.24621 * 0.32853 * 6 5 4 26 26 H 0.97007 * 119.99982 * 180.02562 * 11 10 8 27 27 H 1.08991 * 109.46852 * 270.02565 * 17 16 7 28 28 H 1.08998 * 109.47082 * 30.03063 * 17 16 7 29 29 H 1.09005 * 109.46943 * 150.02304 * 17 16 7 30 30 H 1.07997 * 120.05331 * 0.04508 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.2076 0.0000 4 6 3.5584 1.2301 -0.0053 5 6 4.2766 0.0228 0.0010 6 6 5.6534 -0.2785 0.0015 7 6 5.7785 -1.6641 0.0018 8 6 6.9835 -2.3751 0.0028 9 1 6.9734 -3.4551 0.0034 10 6 8.2042 -1.6856 0.0027 11 7 8.2164 -0.3782 0.0011 12 14 9.8129 -2.6348 0.0033 13 1 9.8838 -3.4899 -1.2087 14 1 10.9507 -1.6805 0.0024 15 1 9.8834 -3.4887 1.2163 16 7 4.5125 -2.2215 0.0010 17 6 4.2120 -3.6554 0.0004 18 6 3.5789 -1.2047 -0.0005 19 6 2.1895 -1.1989 0.0005 20 1 -0.3634 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 1.6437 2.1367 -0.0005 24 1 4.0844 2.1733 -0.0101 25 1 6.4634 0.4359 0.0016 26 1 9.0611 0.0989 0.0006 27 1 4.1385 -4.0107 -1.0273 28 1 5.0080 -4.1936 0.5151 29 1 3.2659 -3.8285 0.5134 30 1 1.6447 -2.1314 0.0002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214383733.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:59 Heat of formation + Delta-G solvation = 38.609022 kcal Electronic energy + Delta-G solvation = -13724.015745 eV Core-core repulsion = 11483.822717 eV Total energy + Delta-G solvation = -2240.193028 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.73561 -36.31873 -33.72760 -32.01666 -29.55172 -29.31821 -26.99917 -25.23823 -23.61590 -21.12624 -19.59637 -19.10031 -16.85791 -15.73532 -15.29404 -14.44121 -14.11547 -13.91369 -13.15514 -12.93624 -12.87770 -12.36925 -11.75223 -11.67092 -11.61797 -11.41941 -11.33474 -10.95707 -10.75076 -10.37040 -10.04581 -9.83323 -9.57720 -9.30212 -8.27092 -7.01309 -6.70603 -6.32911 -4.36000 2.34181 2.82010 2.99594 2.99928 3.02126 3.78779 4.07876 4.23690 5.03061 5.38189 5.64239 5.71161 5.79018 5.99066 6.04369 6.12458 6.13868 6.16629 6.33591 6.55080 6.81571 6.88454 6.97558 7.03770 7.36346 7.65166 7.67202 7.81022 7.90233 8.02888 8.34973 8.67940 8.76800 8.97510 9.17003 10.13121 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.053144 B = 0.008254 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.740518 B = 3391.367773 C = 3897.661012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.155 4.155 3 C -0.135 4.135 4 C -0.133 4.133 5 C -0.047 4.047 6 C -0.325 4.325 7 C 0.261 3.739 8 C -0.442 4.442 9 H 0.076 0.924 10 C 0.072 3.928 11 N -0.778 5.778 12 Si 0.927 3.073 13 H -0.265 1.265 14 H -0.275 1.275 15 H -0.265 1.265 16 N -0.519 5.519 17 C 0.099 3.901 18 C 0.040 3.960 19 C -0.114 4.114 20 H 0.050 0.950 21 H 0.049 0.951 22 H 0.052 0.948 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.165 0.835 26 H 0.281 0.719 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 -2.391 0.086 5.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.156 4.156 3 C -0.154 4.154 4 C -0.152 4.152 5 C -0.052 4.052 6 C -0.348 4.348 7 C 0.157 3.843 8 C -0.475 4.475 9 H 0.094 0.906 10 C -0.148 4.148 11 N -0.403 5.403 12 Si 0.751 3.249 13 H -0.190 1.190 14 H -0.200 1.200 15 H -0.190 1.190 16 N -0.209 5.209 17 C -0.044 4.044 18 C -0.063 4.063 19 C -0.135 4.135 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.115 0.885 24 H 0.120 0.880 25 H 0.182 0.818 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.282 -2.507 0.087 4.963 hybrid contribution 0.659 -0.528 -0.022 0.845 sum -3.623 -3.035 0.065 4.727 Atomic orbital electron populations 1.20493 0.92935 1.00867 1.00437 1.18982 0.94087 0.92535 1.09967 1.20087 0.93920 0.95884 1.05550 1.20118 0.93200 0.96015 1.05876 1.18534 0.94992 0.91211 1.00455 1.21785 0.93021 0.94376 1.25605 1.18170 0.81822 0.91673 0.92628 1.18653 0.88827 0.94231 1.45774 0.90612 1.25785 1.01089 0.94982 0.92922 1.69704 1.28532 1.07765 1.34331 0.86057 0.79356 0.79675 0.79781 1.18975 1.20019 1.18973 1.44141 1.05462 1.03434 1.67895 1.21461 1.00981 0.81041 1.00911 1.18202 0.90129 0.88312 1.09614 1.19533 0.90389 0.96518 1.07089 0.93089 0.93203 0.92931 0.88459 0.88024 0.81812 0.90734 0.93399 0.90910 0.92222 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.40 9.99 36.00 0.36 -1.04 16 2 C -0.15 -3.11 5.89 -104.46 -0.62 -3.73 16 3 C -0.13 -2.79 9.61 -39.97 -0.38 -3.18 16 4 C -0.13 -3.09 10.08 -39.39 -0.40 -3.48 16 5 C -0.05 -1.23 6.14 -106.91 -0.66 -1.88 16 6 C -0.33 -9.07 9.80 -38.23 -0.37 -9.45 16 7 C 0.26 7.07 6.65 -83.98 -0.56 6.51 16 8 C -0.44 -11.38 8.96 -38.22 -0.34 -11.73 16 9 H 0.08 1.80 7.06 -52.49 -0.37 1.43 16 10 C 0.07 1.75 5.50 -17.28 -0.10 1.66 16 11 N -0.78 -19.81 10.18 55.56 0.57 -19.25 16 12 Si 0.93 18.08 29.56 -169.99 -5.03 13.06 16 13 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 14 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 15 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 16 N -0.52 -12.66 3.24 -118.87 -0.39 -13.04 16 17 C 0.10 1.87 10.81 59.85 0.65 2.52 16 18 C 0.04 1.00 6.81 -83.69 -0.57 0.43 16 19 C -0.11 -2.47 9.59 -39.42 -0.38 -2.84 16 20 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 22 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 23 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 24 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 25 H 0.16 4.72 5.58 -52.49 -0.29 4.42 16 26 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.30 7.26 -51.93 -0.38 0.92 16 29 H 0.06 0.99 8.12 -51.93 -0.42 0.56 16 30 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 257.05 15.07 3.87 3.87 Total: -1.00 -28.69 257.05 -7.88 -36.58 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -3.55 Total: 5.01 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -3.36 Total: -26.22 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.18 Total: -32.29 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.69 -7.88 -36.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214383733.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.186 kcal (2) G-P(sol) polarization free energy of solvation -28.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds