Wall clock time and date at job start Mon Mar 30 2020 02:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38950 * 119.64575 * 2 1 4 4 C 1.36434 * 120.58969 * 180.25814 * 3 2 1 5 5 C 1.40483 * 119.80141 * 359.44631 * 4 3 2 6 6 C 1.40938 * 133.08864 * 180.19008 * 5 4 3 7 7 C 1.39125 * 107.49717 * 180.32396 * 6 5 4 8 8 C 1.39920 * 125.69655 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00072 * 179.97438 * 8 7 6 10 10 C 1.40190 * 119.99827 * 359.95567 * 8 7 6 11 11 N 1.30746 * 119.99863 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 119.99768 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47611 * 59.99647 * 12 10 8 14 14 H 1.48505 * 109.47028 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47258 * 299.99603 * 12 10 8 16 16 N 1.38321 * 108.60903 * 0.02562 * 7 6 5 17 17 C 1.46500 * 125.60188 * 179.97438 * 16 7 6 18 18 C 1.38043 * 108.79213 * 0.02562 * 16 7 6 19 19 C 1.37953 * 119.65212 * 179.97438 * 2 1 3 20 20 H 1.09004 * 109.47153 * 90.00766 * 1 2 3 21 21 H 1.09005 * 109.46784 * 210.00109 * 1 2 3 22 22 H 1.09000 * 109.47633 * 330.00161 * 1 2 3 23 23 H 1.08002 * 119.70207 * 359.97167 * 3 2 1 24 24 H 1.07996 * 120.09303 * 179.70310 * 4 3 2 25 25 H 1.07998 * 126.24621 * 0.32853 * 6 5 4 26 26 H 0.97007 * 119.99982 * 180.02562 * 11 10 8 27 27 H 1.08991 * 109.46852 * 270.02565 * 17 16 7 28 28 H 1.08998 * 109.47082 * 30.03063 * 17 16 7 29 29 H 1.09005 * 109.46943 * 150.02304 * 17 16 7 30 30 H 1.07997 * 120.05331 * 0.04508 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.2076 0.0000 4 6 3.5584 1.2301 -0.0053 5 6 4.2766 0.0228 0.0010 6 6 5.6534 -0.2785 0.0015 7 6 5.7785 -1.6641 0.0018 8 6 6.9835 -2.3751 0.0028 9 1 6.9734 -3.4551 0.0034 10 6 8.2042 -1.6856 0.0027 11 7 8.2164 -0.3782 0.0011 12 14 9.8129 -2.6348 0.0033 13 1 9.8838 -3.4899 -1.2087 14 1 10.9507 -1.6805 0.0024 15 1 9.8834 -3.4887 1.2163 16 7 4.5125 -2.2215 0.0010 17 6 4.2120 -3.6554 0.0004 18 6 3.5789 -1.2047 -0.0005 19 6 2.1895 -1.1989 0.0005 20 1 -0.3634 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 1.6437 2.1367 -0.0005 24 1 4.0844 2.1733 -0.0101 25 1 6.4634 0.4359 0.0016 26 1 9.0611 0.0989 0.0006 27 1 4.1385 -4.0107 -1.0273 28 1 5.0080 -4.1936 0.5151 29 1 3.2659 -3.8285 0.5134 30 1 1.6447 -2.1314 0.0002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214383733.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:59 Heat of formation + Delta-G solvation = 23.586585 kcal Electronic energy + Delta-G solvation = -13724.667167 eV Core-core repulsion = 11483.822717 eV Total energy + Delta-G solvation = -2240.844450 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.53147 -38.01937 -35.56191 -33.69673 -31.24927 -31.03229 -28.71098 -26.88892 -25.31185 -22.89104 -21.36173 -20.90789 -18.70838 -17.55060 -16.97512 -16.09660 -15.80199 -15.55103 -14.81518 -14.51680 -14.24515 -14.13308 -13.47278 -13.26390 -13.13727 -12.90943 -12.85955 -12.61276 -12.37138 -11.98772 -11.70683 -11.68943 -11.32990 -11.04220 -10.07109 -8.83638 -8.52538 -8.16303 -6.30951 0.58619 1.08297 1.39210 1.44257 1.53698 2.15190 2.24332 2.53328 3.23003 3.46988 4.12682 4.17248 4.31954 4.50402 4.54550 4.65931 4.70882 4.87551 4.96689 5.01051 5.08017 5.17480 5.27876 5.33426 5.58099 5.81172 5.93146 6.05005 6.07079 6.17832 6.51930 6.76599 6.84472 7.10664 7.27697 8.34319 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.053144 B = 0.008254 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.740518 B = 3391.367773 C = 3897.661012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.140 4.140 3 C -0.135 4.135 4 C -0.149 4.149 5 C -0.089 4.089 6 C -0.372 4.372 7 C 0.236 3.764 8 C -0.471 4.471 9 H 0.088 0.912 10 C 0.025 3.975 11 N -0.815 5.815 12 Si 1.006 2.994 13 H -0.257 1.257 14 H -0.268 1.268 15 H -0.257 1.257 16 N -0.526 5.526 17 C 0.093 3.907 18 C 0.022 3.978 19 C -0.123 4.123 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.133 0.867 24 H 0.105 0.895 25 H 0.142 0.858 26 H 0.287 0.713 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.230 -3.431 0.100 7.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C -0.154 4.154 4 C -0.168 4.168 5 C -0.094 4.094 6 C -0.395 4.395 7 C 0.130 3.870 8 C -0.504 4.504 9 H 0.106 0.894 10 C -0.191 4.191 11 N -0.440 5.440 12 Si 0.825 3.175 13 H -0.181 1.181 14 H -0.193 1.193 15 H -0.181 1.181 16 N -0.217 5.217 17 C -0.048 4.048 18 C -0.081 4.081 19 C -0.145 4.145 20 H 0.088 0.912 21 H 0.085 0.915 22 H 0.091 0.909 23 H 0.151 0.849 24 H 0.123 0.877 25 H 0.159 0.841 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.150 -3.556 0.102 7.104 hybrid contribution 1.009 -0.097 -0.030 1.014 sum -5.141 -3.653 0.071 6.307 Atomic orbital electron populations 1.20579 0.88923 1.02829 1.02201 1.19670 0.96939 0.91576 1.05961 1.20525 0.92939 0.97973 1.03985 1.20390 0.94682 0.95423 1.06311 1.18855 0.94759 0.93300 1.02501 1.21740 0.93738 0.95151 1.28871 1.18470 0.83412 0.91878 0.93226 1.19049 0.89323 0.94954 1.47075 0.89377 1.26902 1.04634 0.95826 0.91688 1.69837 1.29753 1.09572 1.34872 0.84891 0.74250 0.78173 0.80138 1.18125 1.19252 1.18065 1.44380 1.04545 1.05281 1.67453 1.21744 1.02480 0.78293 1.02296 1.18643 0.91491 0.87994 1.09974 1.19946 0.89142 0.98574 1.06803 0.91231 0.91477 0.90898 0.84885 0.87684 0.84102 0.90184 0.92009 0.90332 0.89609 0.85982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.29 9.99 71.24 0.71 -1.58 16 2 C -0.14 -5.18 5.89 -19.76 -0.12 -5.30 16 3 C -0.14 -5.29 9.61 22.02 0.21 -5.08 16 4 C -0.15 -7.02 10.08 22.40 0.23 -6.79 16 5 C -0.09 -4.86 6.14 -21.35 -0.13 -4.99 16 6 C -0.37 -22.15 9.80 23.14 0.23 -21.93 16 7 C 0.24 13.33 6.65 38.74 0.26 13.59 16 8 C -0.47 -25.11 8.96 23.15 0.21 -24.90 16 9 H 0.09 4.26 7.06 -2.91 -0.02 4.24 16 10 C 0.03 1.27 5.50 85.33 0.47 1.73 16 11 N -0.81 -43.68 10.18 21.87 0.22 -43.46 16 12 Si 1.01 37.35 29.56 68.60 2.03 39.38 16 13 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 14 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 15 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 16 N -0.53 -26.08 3.24 -529.99 -1.72 -27.79 16 17 C 0.09 3.43 10.81 127.77 1.38 4.81 16 18 C 0.02 1.10 6.81 39.06 0.27 1.36 16 19 C -0.12 -5.08 9.59 22.37 0.21 -4.86 16 20 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 21 H 0.07 1.54 8.08 -2.38 -0.02 1.53 16 22 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 23 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 24 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 25 H 0.14 8.83 5.58 -2.91 -0.02 8.82 16 26 H 0.29 13.84 8.29 -92.70 -0.77 13.08 16 27 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.08 2.75 7.26 -2.39 -0.02 2.74 16 29 H 0.09 2.65 8.12 -2.38 -0.02 2.63 16 30 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -65.67 257.05 5.59 -60.08 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 1.13 Total: 25.72 kcal Atomic # 6 Polarization: -57.85 SS G_CDS: 3.92 Total: -53.93 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -1.50 Total: -71.25 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Total: -65.67 5.59 -60.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214383733.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.671 kcal (2) G-P(sol) polarization free energy of solvation -65.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds